• 한국환경과학회지
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• 제30권5호
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• pp.379-389
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• 2021

Soil microorganism activity in an agricultural field is affected by various factors including climate conditions, soil chemical properties, and crop cultivation. In this study, we elucidate the correlation between microorganism activity and agricultural environment factors using the dehydrogenase activity (DHA) value, which is one of the indicators of soil microbial activity. As a result, the various factors noted above were related to the DHA value. Annual rainfall, soil Mg2+, bacterial and fungal diversities, types of crops, developmental stages, seasons, and cultivation status were highly correlated with the DHA value. Furthermore, next-generation sequencing (NGS) analysis was used to identify that the type of crop affected soil microbial compositions of both bacteria and fungi. Soil used for soybean cultivation showed the highest relative abundance for Verrucomicrobia, Planctomycetes, and Acidobacteria but Actinobacteria and Firmicutes had the lowest relative abundance. In the case of soil used for potato cultivation, Actinobacteria had the highest relative abundance but Proteobacteria had the lowest relative abundance. Armatimonadetes showed the highest relative abundance in soil used for cabbage cultivation. Among the fungal communities, Mortierellomycota had the highest relative abundance for soybean cultivation but the lowest relative abundance for cabbage cultivation; further, Rozellomycota, Chytridiomycota, and Cercozoa had the highest relative abundance for cabbage cultivation. Basidiomycota had the highest relative abundance for potato cultivation but the lowest relative abundance for soybean cultivation.

• 한국환경농학회지
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• 제40권1호
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• pp.49-59
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• 2021

BACKGROUND: Soil salinity causes reduction of crop productivity. Rhizosphere microbes have metabolic capabilities and ability to adaptation of plants to biotic and abiotic stresses. Plant growth-promoting bacteria (PGPB) could play a role as elicitors for inducing tolerance to stresses in plants by affecting resident microorganism in soil. This study was conducted to demonstrate the effect of selected strains on rhizosphere microbial community under salinity stress. METHODS AND RESULTS: The experiments were conducted in tomato plants in pots containing field soil. Bacterial suspension was inoculated into three-week-old tomato plants, one week after inoculation, and -1,000 kPa-balanced salinity stress was imposed. The physiological and biochemical attributes of plant under salt stress were monitored by evaluating pigment, malondialdehyde (MDA), proline, soil pH, electrical conductivity (EC) and ion concentrations. To demonstrate the effect of selected Bacillus strains on rhizosphere microbial community, soil microbial diversity and abundance were evaluated with Illumina MiSeq sequencing, and primer sets of 341F/805R and ITS3/ITS4 were used for bacterial and fungal communities, respectively. As a result, when the bacterial strains were inoculated and then salinity stress was imposed, the inoculation decreases the stress susceptibility including reduction in lipid peroxidation, enhanced pigmentation and proline accumulation which subsequently resulted in better plant growth. However, bacterial inoculations did not affect diversity (observed OTUs, ACE, Chao1 and Shannon) and structure (principle coordinate analysis) of microbial communities under salinity stress. Furthermore, relative abundance in microbial communities had no significant difference between bacterial treated- and untreated-soils under salinity stress. CONCLUSION: Inoculation of Bacillus strains could affect plant responses and soil pH of tomato plants under salinity stress, whereas microbial diversity and abundance had no significant difference by the bacterial treatments. These findings demonstrated that Bacillus strains could alleviate plant's salinity damages by regulating pigments, proline, and MDA contents without significant changes of microbial community in tomato plants, and can be used as effective biostimulators against salinity stress for sustainable agriculture.

• 한국해양생명과학회지
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• 제4권2호
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• pp.53-62
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• 2019

해양 종속영양 박테리아는 수생태계에서 미소생물환의 주요 구성원으로 유기물의 분해 등 생지화학적 순환에서 중요한 역할을 한다. 해양 생태계의 물질 순환과 에너지 흐름을 이해하기 위해서는 박테리아의 변동에 대한 연구 조사가 중요하다. 본 연구는 방조제 건설로 변형된 영산강 하구 해수역을 대상으로 박테리아와 환경인자들의 월 변동 양상을 조사하였고, 박테리아 변동의 주요인자인 식물플랑크톤(chlorophyll-a)과의 상관성을 크기별로 구분하여 파악하고자 하였다. 연구 결과, 영산강 하구의 박테리아는 저층보다 표층에서 높은 개체수를 보였으며, 겨울철보다 여름철에 개체수가 높았다. 그리고 방조제에 가까울수록 개체수가 증가하였으며, 방조제와 가장 인접한 정점에서 2018년 8월, 9월 그리고 2019년 6월에 최대치로 증가하였다. 박테리아의 개체수가 높았던 정점과 시기에 식물플랑크톤의 생체량도 증가하면서 통계분석결과에서도 양의 상관성을 보였고 크기별로도 모두 유사한 상관성을 보였다. 이러한 결과는 식물플랑크톤 기원의 유기물이 박테리아 변동에 영향을 미치고 있고 크기별로 그 영향의 차이가 없음을 제시하고 있다. 또한 수온에 비례하여 증가하는 박테리아의 계절 분포는 박테리아의 성장에 대한 수온의 영향을 보여주는 결과라 볼 수 있다. 그 외에 간헐적인 담수 유입을 통한 영양염 공급과 박테리아의 개체수 변동의 연관성은 관찰되지 않았다. 본 연구에서는 또한 특정시기에 성층이 거의 없는 조건에서 용존산소가 고갈되는 빈산소층이 관찰되었는데 이는 식물플랑크톤 기원 유기물 공급과 박테리아의 분해로 인한 산소 소모의 결과로 추정된다.

• Journal of Microbiology and Biotechnology
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• 제33권10호
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• pp.1299-1308
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• 2023

Carya cathayensis is an important economic nut tree that is endemic to eastern China. As such, outbreaks of root rot disease in C. cathayensis result in reduced yields and serious economic losses. Moreover, while soil bacterial communities play a crucial role in plant health and are associated with plant disease outbreaks, their diversity and composition in C. cathayensis are not clearly understood. In this study, Proteobacteria, Acidobacteria, and Actinobacteria were found to be the most dominant bacterial communities (accounting for approximately 80.32% of the total) in the root tissue, rhizosphere soil, and bulk soil of healthy C. cathayensis specimens. Further analysis revealed the abundance of genera belonging to Proteobacteria, namely, Acidibacter, Bradyrhizobium, Paraburkholderia, Sphaerotilus, and Steroidobacter, was higher in the root tissues of healthy C. cathayensis specimens than in those of diseased and dead trees. In addition, the abundance of four genera belonging to Actinobacteria, namely, Actinoallomurus, Actinomadura, Actinocrinis, and Gaiella, was significantly higher in the root tissues of healthy C. cathayensis specimens than in those of diseased and dead trees. Altogether, these results suggest that disruption in the balance of these bacterial communities may be associated with the development of root rot in C. cathayensis, and further, our study provides theoretical guidance for the isolation and control of pathogens and diseases related to this important tree species.

• Animal Bioscience
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• 제35권11호
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• pp.1698-1710
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• 2022

Objective: Raw potato starch (RPS) is resistant to digestion, escapes absorption, and is metabolized by intestinal microflora in the large intestine and acts as their energy source. In this study, we compared the effect of different concentrations of RPS on the intestinal bacterial community of weaned piglets. Methods: Male weaned piglets (25-days-old, 7.03±0.49 kg) were either fed a corn/soybean-based control diet (CON, n = 6) or two treatment diets supplemented with 5% RPS (RPS5, n = 4) or 10% RPS (RPS10, n = 4) for 20 days and their fecal samples were collected. The day 0 and 20 samples were analyzed using a 16S rRNA gene sequencing technology, followed by total genomic DNA extraction, library construction, and high-throughput sequencing. After statistical analysis, five phyla and 45 genera accounting for over 0.5% of the reads in any of the three groups were further analyzed. Furthermore, short-chain fatty acids (SCFAs) in the day 20 fecal samples were analyzed using gas chromatography. Results: Significant changes were not observed in the bacterial composition at the phylum level even after 20 d post feeding (dpf); however, the abundance of Intestinimonas and Barnesiella decreased in both RPS treatment groups compared to the CON group. Consumption of 5% RPS increased the abundance of Roseburia (p<0.05) and decreased the abundance of Clostridium (p<0.01) and Mediterraneibacter (p< 0.05). In contrast, consumption of 10% RPS increased the abundance of Olsenella (p<0.05) and decreased the abundance of Campylobacter (p<0.05), Kineothrix (p<0.05), Paraprevotella (p<0.05), and Vallitalea (p<0.05). Additionally, acetate (p<0.01), butyrate (p<0.05), valerate (p = 0.01), and total SCFAs (p = 0.01) were upregulated in the RPS5 treatment group Conclusion: Feeding 5% RPS altered bacterial community composition and promoted gut health in weaned piglets. Thus, resistant starch as a feed additive may prevent diarrhea in piglets during weaning.

• 한국토양비료학회지
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• 제48권2호
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• pp.132-137
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• 2015

Effects of chitin and chitosan treatments on soil microorganisms and the mesofauna were investigated in a microcosm and a fumigated field experiment. Responses of microorganisms were determined using microbial phospholipid fatty acid (PLFA) analysis, whereas responses of the mesofauna were measured in terms of the abundances of nematodes and microarthropods. Soil nitrate concentration increased on the application of chitin. Overall, chitin promoted bacterial and fungal abundance, leading to an increase in abundance of free-living soil nematodes that feed on decomposers. The ratio of saturated to unsaturated fatty acids was highest in the chitin-treated soil. Chitosan had a minimal effect on the abundance of microorganisms; however, it reduced the abundance of collembolans in the microcosm experiment. These results indicate that the application of chitin has beneficial effects on the supply of nutrients and promotion of the abundance of soil organisms.

• 한국습지학회지
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• 제24권2호
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• pp.69-82
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• 2022

본 연구는 상시 담수 상태의 복합생태 논습지에서 유기농 벼-큰징거미새우 복합생산 조건 시 1) 논습지 토양 화학성 및 세균 군집 특성을 파악하여 토양 화학성과 세균 간의 상관관계를 분석하고, 2) 유기농 벼 단작 토양과 관행 벼 단작 토양의 세균 군집과 비교하여 유기농 복합생태 토양의 미생물 다양성을 비교 분석하는 것이다. 토양 화학성의 경우 유기농 복합생산 운영 기간이 길수록 유효인산과 유기물 함량이 증가한다. 모든 토양 시료에서 문(Phylum) 수준의 세균 분석 결과 9개의 주요 문이 분포되어 있으며, 모든 토양 시료에서 Proteobacteria가 우점하고 있다. 속(Genus) 수준 분셕 결과 37개의 주요 속이 분류되었으며, 벤다이어그램 분석 결과 모든 토양 시료에 존재하는 250개의 OTU가 분류되었고, 유기농 벼재배 토양에 특화된 561개의 OTU가 관찰되었다. 주좌표분석 결과 관행 벼 단작 토양의 세균 군집과 비교하여 유기농 벼 단작 토양과 유기농 복합생태 논습지 토양의 세균 군집 간 유사도가 높은 것으로 나타났다.

• Asian-Australasian Journal of Animal Sciences
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• 제28권9호
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• pp.1362-1370
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• 2015

This study was performed to investigate the effect of different levels of dietary crude protein (CP) on composition of odorous compounds and bacterial communities in pig manure. A total of 48 male pigs (average initial body weight 45 kg) fed diets containing three levels of dietary CP (20%, 17.5%, and 15%) and their slurry samples were collected from the pits under the floor every week for one month. Changes in composition of odorous compounds and bacterial communities were analyzed by gas chromatography and 454 FLX titanium pyrosequencing systems, respectively. Levels of phenols, indoles, short chain fatty acid and branched chain fatty acid were lowest (p<0.05) in CP 15% group among three CP levels. Relative abundance of Bacteroidetes phylum and bacterial genera including Leuconostoc, Bacillus, Atopostipes, Peptonphilus, Ruminococcaceae_uc, Bacteroides, and Pseudomonas was lower (p<0.05) in CP 15% than in CP 20% group. There was a positive correlation (p<0.05) between odorous compounds and bacterial genera: phenol, indole, iso-butyric acid, and iso-valeric acid with Atopostipes, p-cresol and skatole with Bacteroides, acetic acid and butyric acid with AM982595_g of Porphyromonadaceae family, and propionic acid with Tissierella. Taken together, administration of 15% CP showed less production of odorous compounds than 20% CP group and this result might be associated with the changes in bacterial communities especially whose roles in protein metabolism.

• 농업과학연구
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• 제43권5호
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• pp.777-787
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• 2016

In the present study, we aimed to investigate the effect of dietary supplementation of palm kernel meal (PKM), as a fermentable carbohydrate source, on the growth performance, meat quality, concentration of odorous compound, and changes in bacterial community in swine manure. Swine (average initial body weight of $51.36{\pm}1.02kg$) were fed diet which included three levels of PKM (0, 2 and 4%), and their manure samples were collected from the slurry pit. Growth performance and meat quality were not affected by PKM treatments (p > 0.05). Levels of phenols and indoles were decreased in the 2 and 4% PKM treatments compared to 0% PKM (control; p < 0.05). Especially, compared to the control, the 2% PKM group showed decreased levels of phenols by 35% and indoles by 34%. Among the dominant bacterial genera, the main change in relative abundance occurred in those belonging to the Firmicutes phylum in PKM treatments. Terrisporobacter and Clostridium were decreased in the PKM groups compared to the control. However, the relative abundance of Intestinibacter, AM406061_g, Coprococcus_g2, Phascolarcotobacterium, EF401875_g, Lactobacillus, and Streptococcus were increased in the PKM group compared to control. Taken together, administration of PKM had a beneficial effect on reducing production of odorous compounds in swine manure, possibly by modulating the communities of predominantly carbohydrate-utilizing bacteria in the large intestine of swine.

• Animal Bioscience
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• 제36권12호
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• pp.1842-1852
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• 2023

Objective: Hairy vetch is considered to improve the nutritional value of corn because of its high protein and mineral levels. To better understand the mechanism underlying hairy vetch regulated whole-plant corn silage fermentation, this experiment investigated the fermentation quality and bacterial community of whole-plant corn and hairy vetch mixture. Methods: Whole-plant corn and hairy vetch were mixed at ratios of 10:0 (Mix 10:0), 8:2 (Mix 8:2), 6:4 (Mix 6:4), 4:6 (Mix 4:6), 2:8 (Mix 2:8), and 0:10 (Mix 0:10) on a fresh weight basis. After ensiling 60 days, samples were collected to examine the fermentation dynamics, ensiling characteristics, and bacterial communities. Results: Mix 0:10, Mix 2:8, and Mix 4:6 showed poor fermentation characteristics. Mix 8:2 and Mix 6:4 silages showed high quality, based on the low pH, acetic acid, and ammonia nitrogen levels and the high lactic acid, crude protein, and crude fat contents. The bacterial diversity was affected by the mixing ratio of the two forage species. The genus Lactobacillus dominated the bacterial community in Mix 10:0 silage, whereas with the addition of hairy vetch, the relative abundance of unclassified-Enterobacter increased from 7.67% to 41.84%, and the abundance of Lactobacillus decreased from 50.66% to 13.76%. Conclusion: The silage quality of whole-plant corn can be improved with inclusion levels of hairy vetch from 20% to 40%.