• 한국환경생태학회지
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• 제19권1호
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• pp.46-54
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• 2005

2004년 5월부터 11월까지 원주천 어류군집의 변화를 조사한 결과는 다음과 같다. 조사된 어종은 총 6과 24종이었으며 이들 중 한국고유종은 가는돌고기(Pseudopungtungia tenuicorpa), 쉬리(Coreoleuciscus splendidus), 긴몰개(Squalidus gracitis majimae), 몰개(Squalidus japonicus coreanus), 돌마자(Microphysogobio yaluensis), 배가사리(Microphysogobio longidorsalis), 참종개(Iksookimia koreensis), 새코미꾸리(Koreocobitis rotundicaudata), 퉁가리(Liobagus andersoni) 및 얼룩동사리(Odontobutis interrupta) 등 10종$(41.7\%)$이었다. 본 조사에서 피라미(Zacco platypus)가 $54.7\%$로 우점하였고 버들치(Rhynthocypris oxycephalus)가 $16.7\%$로 아우점하였다. 또한 우세종은 붕어(Carassius auratus)가 $5.4\%$, 참종개(I. koreensis) $3.4\%$, 종개(Orthrias toni) $3.3\%$, 돌고기(Pungtungia herzi) $3.0\%$ 등의 순으로 확인되었다. 어류의 분포에 따라, 원주천은 비가중치 평균연결법(UPGMA)에 의해 2개의 군집으로 나누어졌다. 생활형에 따른 어류군집의 변화를 보면 저서성 어종의 수가 감소하였고 하상변화와 오염에 대한 내성이 강한 부유성 어종이 증가하는 것으로 나타났다.

• 한국수자원학회논문집
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• 제46권4호
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• pp.361-372
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• 2013

본 연구에서는 1961~2010년 사이의 서울 지점 연 최대치 독립 호우사상들을 베타분포로 분석하여 서울지점의 대표 호우사상을 결정하였다. 구체적으로 살펴보면, 먼저, 첨두강우량을 기준으로 연최대치 호우사상들을 상위 50%와 하위 50%로 구분한다. 각각의 경우에 대해 첨두강우량의 평균을 지나는 베타분포를 유도한다. 마지막으로, 유도된 두 베타분포의 산술평균을 우량주상도로 나타내어 대표 호우사상을 결정한다. 이렇게 유도된 대표 호우사상은 실제 호우사상과 유사한 모양을 갖는 것으로 확인되었으며, 특히 Huff 분포에 비해 큰 첨두 강우량을 갖는 것으로 확인되었다. 여러 강우시간분포 모형들과 비교해 본 결과 Keifer & Chu 모형이 본 연구의 결과와 가장 유사한 것으로 나타났다.

• International Journal of Industrial Entomology and Biomaterials
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• 제29권2호
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• pp.169-178
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• 2014

In this study, we investigated genetic diversity of 22 microsporidian isolates infecting tropical tasar silkworm, Antheraea mylitta collected from various geographical forest locations in the state of Jharkhand, India, using polymerase chain reaction (PCR)-based marker assay: random amplified polymorphic DNA (RAPD). A type species, NIK-1s_mys was used as control for comparison. The shape of mature microsporidians was found to be oval to elongate, measuring 3.80 to $5.10{\mu}m$ in length and 2.56 to $3.30{\mu}m$ in width. Of the 20 RAPD primers screened, 16 primers generated reproducible profiles with 298 polymorphic fragments displaying high degree of polymorphism (97%). A total of 14 RAPD primers produced 45 unique putative genetic markers, which were used to differentiate the microsporidians. Calculation of genetic distance coefficients based on dice coefficient method and clustering with un-weighted pair group method using arithmetic average (UPGMA) analysis was conducted to unravel the genetic diversity of microsporidians infecting tasar silkworm. The similarity coefficients varied from 0.059 to 0.980. UPGMA analysis generated a dendrogram with four microsporidian groups, which appear to be different from each other as well as from NIK-1s_mys. Two-dimensional distribution based on Euclidean distance matrix also revealed considerable variability among different microsporidians identified from the tasar silkworms. Clustering of few microsporidian isolates was in accordance with the geographic origin. The results indicate that the RAPD profiles and specific/unique genetic markers can be used for differentiating as well as to identify different microsporidians with considerable accuracy.

• Journal of Microbiology
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• 제40권2호
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• pp.109-118
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• 2002

The present work is aimed at providing additional new pure cultures of oxalate utilizing bacteria and its preliminary characterization for further work in the field of oxalate-metabolism and taxonomic studies. The taxonomy of 14 mesophilic, aerobic oxalotrophic bacteria isolated by an enrichment culture technique from soils rhizosphers, and the juice of the petiole/stem tissue of plants was investigated. Isolates were characterized with 95 morphological, biochemical and physiological tests. Cellular lipid components and carotenoids of isolates were also studied as an aid to taxonomic characterization. All isolates were Gram-negative, oxidase and catalase positive and no growth factors were required. In addition to oxalates, some of the strains grow on methanol and/or formate. The taxonomic similarities among isolates, reference strains or previously reported oxalotrophic bacteria were analysed by using the Simple Matching (S/ sub SM/) and Jaccard (S$\_$J/) Coefficients. Clustering was performed by using the unweighted pair group method with arithmetic averages (UPGMA) algorithm. The oxalotrophic strains formed five major and two single-member clusters at the 70-86% similarity level. Based on the numerical taxonomy, isolates were separated into three phenotypic groups. Pink-pigmented strains belonged to Methylobacterium extorquens, yellow-pigmented strains were most similar to Pseudomonas sp. YOx and Xanthobacter autorophicus, and heterogeneous non-pigmented strains were closely related to genera Azospirillum, Ancylobacter, Burkholderia and Pseudomonas. New strains belonged to the genera Pseudomonas, Azospirillum and Ancylobacter that differ taxonomically from other known oxalate oxidizers were obtained. Numerical analysis indicated that some strains of the yellow-pigmented and nonpigmented clusters might represent new species.

• 한국환경복원기술학회지
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• 제23권1호
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• pp.49-62
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• 2020

This study was conducted as a basic study to develop the HSI(Habitat Suitability Index) model of Pelophylax chosenicus based on the research on the ecological and habitat status of Pelophylax chosenicus and the literature research on the HSI model. The habitat variables of Pelophylax chosenicus are the altitude of the spawning pond, the habitat area, the distance from wetland, the soil(aptitude grade for paddy field), the place for eating such as paddy field and wetlands(land cover) and the distance from Predator(Lithobates catesbeianus) distribution area. Based on the existing literature of Pelophylax chosenicus, the results of field surveys and expert opinions, the SI(Suitability Index) model and HSI model were developed and applied to the site to examine the applicability of the HSI model. As a result of application, SI 4 and SI 5 with varying SI values seem to have a major influence on the HSI. In addition, it is considered that the HSI model is an arithmetic mean of SI models, which has a major impact on HSI. The HSI model can be an important basis for the habitat evaluation and restoration model of Pelophylax chosenicus. In particular, it is highly applicable to the selection and evaluation of alternative habitats for Pelophylax chosenicus.

• 방사선산업학회지
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• 제6권1호
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• pp.23-29
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• 2012

In this study, we investigated the genetic variation in the general of monocot model plant (rice) in response to various ionizing irradiations including gamma-ray, ion beam and cosmic-ray. The non-irradiated and three irradiated (200 Gy of gamma-ray and 40 Gy of ion beam and cosmic-ray) plants were analyzed by AFLP technique using capillary electrophoresis with ABI3130xl genetic analyzer. The 29 primer combinations tested produced polymorphism results showing a total of 2,238 bands with fragments sizes ranged from 30 bp to 600 bp. The number of polymorphism generated by each primer combinations was varied significantly, ranging from 2 (M-CAC/E-ACG) to 158 (M-CAT/E-AGG) with an average of 77 bands. Polymorphic peaks were detected as 1,269 with an average of 44 per primer combinations. By UPGMA (Unweighted Pair Group Method using Arithmetic clustering) analysis method, the clusters were divided into non-irradiated sample and three irradiated samples at a similarity coefficient of 0.41 and three irradiation samples was subdivided into cosmic-ray and two irradiation samples (200 Gy of gamma-ray and 40 Gy of ion beam) at similarity coefficient of 0.48. Similarity coefficient values ranged from 0.41 to 0.55.

• 방사선산업학회지
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• 제5권4호
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• pp.347-352
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• 2011

In order to identify the genetic relationship analysis by acute and chronic gamma irradiation, Arabidopsis (Arabidopsis thaliana L.) were irradiated with 200 Gy of gamma-rays using gamma-irradiator (3,000 Ci; Nordion, Canada) and gamma-phytotron (400 Ci; Nordion, Canada) for acute and chronic irradiation, respectively. Genetic relationship among two acute gamma-irradiated plants (A1 and A24) and three chronic gamma-irradiated plants (C1W, C2W, C3W) were analyzed using the amplified fragment length polymorphism (AFLP) technique compared with each non-irradiated plant. A total of 28 EcoRI and MseI primer combinations were used to screen 8 treatments by the ABI3130 capillary electrophoresis system. Amplified products by 28 primer sets showed 1,679 bands with an average of 51 bands per primer combination. Out of the total bands scored, 1,164 fragments were polymorphic bands, with different alleles existing among the treatments. The cluster analysis was performed using the UPGMA (Unweighted Pair Group Method using Arithmetic) in the computer program NTSYS-pc. In clustery analysis, acute gamma-irradiation showed higher genetic variation compared with chronic gamma-irradiation.

• 식물분류학회지
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• 제46권4호
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• pp.378-391
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• 2016

돌나물과 한국특산종 태백기린초의 교잡 기원에 대한 가설을 검증하고, 연관 종들의 형태적, 유전적 변이를 알아보기 위해 40개 집단으로부터 18개의 형태형질과 35개 집단에 10개 동위효소 좌위를 분석하였다. 동위효소 연구결과 가는기린초, 기린초 그리고 속리기린초에 높은 빈도로 나타났던 $MDH-2^a$, $PGI-1^a$는 태백기린초 집단에서는 전혀 나타나지 않았으며, 태백기린초의 모든 집단에서 높은 빈도로 나타나는 $MDH-2^c$는 다른 가는기린초아속 식물에서는 낮은 빈도로 나타나고 있어 태백기린초가 기린초와 가는기린초의 잡종화를 통해 기원되었다는 기존의 가설을 지지할 수 없다. 그러나 금대봉 일대의 일부 집단의 개체들은 태백기린초와 기린초 혹은 기린초와 가는기린초 사이에서 형질이입에 의해 만들어진 교잡 개체일 가능성이 높은 것으로 생각된다.

• Horticulture, Environment, and Biotechnology : HEB
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• 제59권6호
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• pp.875-888
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• 2018

Tulip (Tulipa L.) is one of the most important ornamental geophytes in the world. Analysis of molecular variability of tulips is of great importance in conservation and parental lines selection in breeding programs. Of the 70 genic microsatellites, 15 highly polymorphic and reproducible markers were used to assess the genetic diversity, structure, and relationships among 280 individuals of 36 wild and cultivated tulip accessions from two countries: Iran and the Netherlands. The mean values of gene diversity and polymorphism information content were 0.69 and 0.66, respectively, which indicated the high discriminatory power of markers. The calculated genetic diversity parameters were found to be the highest in wild T. systola Stapf (Derak region). Bayesian model-based STRU CTU RE analysis detected five gene pools for 36 germplasms which corresponded with morphological observations and traditional classifications. Based on analysis of molecular variance, to conserve wild genetic resources in some geographical locations, sampling should be performed from distant locations to achieve high diversity. The unweighted pair group method with arithmetic mean dendrogram and principal component analysis plot indicated that among wild tulips, T. systola and T. micheliana Hoog exhibited the closest relationships with cultivated tulips. Thus, it can be assumed that wild tulips from Iran and perhaps other Middle East countries played a role in the origin of T. gesneriana, which is likely a tulip species hybrid of unclear origin. In conclusion, due to the high genetic variability of wild tulips, they can be used in tulip breeding programs as a source of useful alleles related to resistance against stresses.

• Asian-Australasian Journal of Animal Sciences
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• 제32권11호
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• pp.1664-1672
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• 2019

Objective: This study aimed to measure genetic diversity and to determine the relationships among fourteen goose breeds. Methods: Microsatellite markers were isolated from the genomic DNA of geese based on previous literature. The DNA segments, including short tandem repeats, were tested for their diversity among fourteen populations of geese. The diversity was tested on both breeds and loci level and by mean of unweighted pair group method with arithmetic mean and structure program, phylogenetic tree and population structure were tested. Results: A total of 108 distinct alleles (1%) were observed across the fourteen breeds, with 36 out of the 108 alleles (33.2%) being unique to only one breed. Genetic parameters were measured per the 14 breeds and the 9 loci. Medium to high heterozygosity was reported with high effective numbers of alleles (Ne). Polymorphic information contents (PIC) of the screened loci was found to be highly polymorphic for eleven breeds; while 3 breeds were reported moderately polymorphic. Breeding coefficient ($F_{IS}$) ranged from -0.033 to 0.358, and the pair wise genetic differentiation ($F_{ST}$) ranged from 0.01 to 0.36 across the fourteen breeds; for the 9 loci observed and expected heterozygosity, and Ne were same as the breeds parameters, PIC of the screened loci reported 6 loci highly polymorphic and 3 loci to be medium polymorphic, and $F_{IS}$ ranged from -0.113 to 0.368. In addition, genetic distance estimate revealed a close genetic distance between Canada goose and Hortobagy goose breeds by 0.04, and the highest distance was between Taihu goose and Graylag goose (anser anser) breed by 0.54. Conclusion: Cluster analyses were made, and they revealed that goose breeds had hybridized frequently, resulting in a loss of genetic distinctiveness for some breeds.