• Title/Summary/Keyword: and BIOLOG

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Comparison of metabolic diversity by sole carbon source utilization and genetic diversity by restriction patterns of amplified 16S rDNA (ARDRA)in soil bacterial communities. (토양세균 군집의 대사 다양성과 16S rDNA의 제한효소 지문분석에 의한 유전적 다양성의 비교)

  • 송인근;최영길;김유영;조홍범
    • Korean Journal of Microbiology
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    • v.35 no.1
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    • pp.72-77
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    • 1999
  • To investigate soil bacterial diversity according to vegelalioo types, utilizing ability of sole carbon sources and restriction enzyme patterns of 16s rDNA were analyzed. From the both results; five kinds of soil microbial communities were grouped as forest soil (Quercus mongolica and Pinus densi&ra vegetation), grass-agricultured soil and microbial communities of naked soil. But, both soil microbial communities of directily exlracted from ths soil and indirectly extracted from heterotrophic bacteria that cultured soil in LB medium showed very different similarity.

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Patterns of Utilizing Sole Carbon Source by Soil Microbes in a Forest Soil (토양 세균 군집의 유일탄소원 이용에 의한 지문분석)

  • 송인근;최영길;안영범;신규철;조홍범
    • Korean Journal of Microbiology
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    • v.35 no.1
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    • pp.65-71
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    • 1999
  • This study was carried out utilzing ability of sole carbon sources in soil microbial communities used by Biolog GN microplate. Cluster analysis showed that soil microbial cornmuties were categorized into three groups as forest, non-forest soil and naked soil of microbial group. Soil microbial commutites in a forest soil of Qirercus mongoIica was divided into another group microbial communites in Qirercus dendata vegetation soil and Pinus dnzsqlora vegetation soil by Multidimensional scaling(MDS). Generally, sole carbon utilzing abilties were higher in order of polymer, amino acids and carboxylic acids, but it was lower in amides substrates carbon group. From the result: it was supposed that metabolic diversity of microbial communities was corresponded to vegetation succession.

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Sole-Carbon-Source Utilization Patterns of Oligotrophic and Psychrotrophic Bacteria Isolated from Lake Baikal. (바이칼호에서 분리한 빈영양성 세균과 저온성 세균의 탄소원 이용 특성)

  • Lee Geon-Hyoung;Bae Myoung-Sook;Park Suhk-Hwan;Song Hong-Gyu;Ahn Tae-Seok
    • Korean Journal of Microbiology
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    • v.40 no.3
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    • pp.248-253
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    • 2004
  • To scrutinize the physiological diversity by BIOLOG microplate, the carbon source utilization patterns of 168 strains of oligotrophic bacteria and 132 strains of psychrotrophic bacteria isolated from Lake Baikal during 2000 and 2002 were investigated. Eighty-six percent (56 strains) of oxidase test positive group (GN-NENT group) and 89 % (92 strains) of oxidase test negative group (GN-ENT group) among oligotrophic bacteria, and 82% (85 strains) of oxidase test negative group among psychrotrophic bacteria were able to utilize $\alpha$-D-glucose as a sole-carbon-source, and 93% (26 strains) of oxidase test positive group among psychrotrophic bacteria were able to utilize bromosuccinic acid as a sole-carbon-source. However, most strains except few oligotrophic bacteria with oxidase test negative group were not able to utilize $\alpha$-D-lactose as a sole-carbon-source. Most dominant genus among 300 strains was Pseudomonas (49 strains). Other dominant genera belonged to Salmonella, Serratia, Buttiauxella, Pantoea, Yersinia, Brevundimonas, Hydrogenophaga, Photorhabdus, Sphingomonas, and Xenorhabdus. Our results by BIOLOG identification system were able to provide basic data to determine community-level carbon source utilization patterns and to accomplish the efficient and reliable identification for microbial community structure in Lake Baikal.

Metabolic Fingerprinting of Food Wastewater Treatment System (식품폐수 처리 단계별 미생물 대사지문)

  • Yoo, Ki-Hwan;Lee, Sang-Hyeon;Lee, Dong-Geun
    • Journal of Environmental Health Sciences
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    • v.34 no.4
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    • pp.327-332
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    • 2008
  • To determine structure and activities of microbial communities in a food wastewater treatment system, biofilm of RABC (rotating activated Bacillus contactor) and samples of aeration tanks were analyzed. Heterotrophic bacterial concentrations were similar between biofilm and stage 1 aeration tank and decreased 2-log at stage 3 aeration tank as dissolved oxygen decreased, however portions of Bacillus groups were increased at stage 3 aeration tank. It was revealed by quantitative and qualitative analysis of metabolic fingerprinting patterns of Biolog GN2 plate that RABC represented much higher activities and a different microbial community structure compared to aeration tanks. Metabolic fingerprinting showed the carbon sources that isolated Bacillus groups could or could not use, were used similarly meaning that not only Bacillus groups but also other microbial groups would contribute to the treatment of wastewater.

Linkage Between Biodegradation of Polycyclic Aromatic Hydrocarbons and Phospholipid Profiles in Soil Isolates

  • Nam, Kyoung-Phile;Moon, Hee-Sun;Kim, Jae-Young;Kukor, Jerome-J.
    • Journal of Microbiology and Biotechnology
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    • v.12 no.1
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    • pp.77-83
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    • 2002
  • A bacterial consortium capable of utilizing a variety of polycyclic aromatic hydrocarbons has been isolated from a former manufactured gas plant site. The consortium consisted of four members including Arthrobacter sp., Burkholderia sp., Ochrobacterium sp., and Alcaligenes sp., which were identified and characterized by the patterns of fatty acid methyl esters (FAME analysis) and carbon source utilization (BIOLOG system). With the individual members, the biodegradation characteristics of aromatic hydrocarbons depending on different growth substrates were determined. FAME analyses demonstrated that microbial fatty acid profiles changed to significant extents in response to different carbon sources, and hence, such shift profiles may be informative to characterize the biodegradation potential of a bacterium or microbial community.

Bacterial Soft Rot of Wasabi by Erwinia carotovora subsp. coarotovora (Erwinia carotovora subsp. carotora에 의한 고추냉이(와사비) 세균성 무름병)

  • 박덕환;서상태;최준근;임춘근
    • Korean Journal Plant Pathology
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    • v.14 no.5
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    • pp.555-557
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    • 1998
  • Occurrence of soft rots was observed on wasabi (Wasabia japonica Matsum) grown in Chuncheon and Pyengchang Kangwon province, Korea. The symptoms appeared on the wasabi root, which became mushy and black. This eventually resulted in wilting and death of the aboveground parts of the wasabi. The causal organism was isolated from the infected lesions and was identified as Erwinia carotovora subsp. carotovora based on the morphological, physiological and biochemical characteristics, and on the results of the Biolog program (Biolog Inc., U. S. A.). E. carotovora subsp. carotovora is the first described bacterium which causes bacterial soft rot on wasabi in Korea.

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Bacterial Soft Rot of Pepper Caused by Erwinia carotovora subsp. carotovora (Erwinia carotovora subsp. carotovora에 의한 고추 세균성 무름병)

  • 박덕환;김영숙;허성기;명인식;임춘근
    • Korean Journal Plant Pathology
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    • v.14 no.6
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    • pp.738-740
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    • 1998
  • Bacterial soft rot was occurred on fruit of pepper that was grown in Chunceon, Kangwon province, Korea. The symptoms began as a small hole at 5 mm diameter, which made injury by a tobacco bud worm (Heliothis assulta). The affected fruit became soft and produced offensive odor. The causal organism was isolated from the diseased fruit and was identified as Erwinia carotovora subsp. carotovora based on the morphological, physiological and biochemical characteristics, and on the results of the Biolog program (Biolog Inc., U. S. A.). E. carotovora subsp. carotovora is the first described bacterium which causes bacterial soft rot on pepper in Korea.

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Genetic Identification of the Kimchi Strain Using PCR-based PepN and 16S rRNA Gene Sequence (PepN과 16S rRNA Gene Sequence 및 PCR 방법을 이용한 김치 젖산균의 동정)

  • Lee, Myung-Ki;Park, Wan-Soo;Lee, Byong-H.
    • Korean Journal of Food Science and Technology
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    • v.32 no.6
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    • pp.1331-1335
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    • 2000
  • The WL6 strain isolated from Kimchi could not be made scientific name because it was identified as three species, i.e., Leuconostoc mesenternides ssp cremoris, Leu. mesenteroides ssp. dextranicum or Lactobacillus bifermentans when it was tested by API kit or Biolog system methods. The unidentifiable WL6 strain was finally reclassified as Lactobacillus bifermentans by genetic identification using two PCR-based specific sequence primer sets which were originated from homologous pepN and 16S rRNA genes.

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