• 제목/요약/키워드: amino acid complex

검색결과 281건 처리시간 0.029초

녹강균(Metarhizium anisopliae)의 최적 배양조건 및 효소활성 (Optimal Culture Condition and Extracellular Enzyme Activity of Metarhizium anisopliae)

  • 박영일;한영환
    • 미생물학회지
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    • 제36권2호
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    • pp.97-102
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    • 2000
  • 녹장균(Metarhizium ansiopliae)을 생물살충제로서 활용할 목적으로 녹강균의 균사생육 및 포자형성에 미치는 환경요인과 균사외 분비 효소 활성에 대하여 조사였다. M. anisopliae DGUM35001의 균사 생장을 보여주었으며, 공중균사는 SDPY 사용시 가장 우수하엿다. 최소배지로 Czapek-Dox 한천배지를 사용하여 탄소원 이용성 실험의 결과, 단당류에서 glucoserk 이당류에서 sucrose가 가장 우수한 탄소원이었다. 고분자 물질로 chitin 사용시 우수한 균사 생육을 보여주었다. 유기질소원으로 bacto-peptone과 soytone아 무기질소원으로 urea와 ammonium phosphate가 우수한 균사생육을 나타내었으며, 아미노산으로 serine 첨가시 가장 우수한 균사 생육을 나타내었다. Starch배지를 사용하였을 때 가장 우수한 포자형성의 결과를 얻었다. 액체배양후 군사를 제거한 상등액을 조효소액으로 사용시 analyase와 prorease 효소 활성이 우수하였다. 그러나,;ipase와 chitinase 효소활동은 상대적으로 낮았다.

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SVM 모델을 이용한 3차원 패치 기반 단백질 상호작용 사이트 예측기법 (Prediction of Protein-Protein Interaction Sites Based on 3D Surface Patches Using SVM)

  • 박성희
    • 정보처리학회논문지D
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    • 제19D권1호
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    • pp.21-28
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    • 2012
  • 모노머 단백질의 상호작용 사이트 예측은 기능을 알지 못하는 단백질에 대해서 이것과 상호작용하는 단백질로부터 기능을 예측하거나 단백질 도킹을 위한 검색 공간의 감소에 중요한 역할을 한다. 그러나 상호작용사이트 예측은 대부분 단백질 상호작용이 세포 내에서 순간적 반응에 일어나는 약한 상호작용으로 실험에 의한 3차원 결정 구조 식별의 어려움이 따르며 이로 인해 3차원의 복합체 데이터가 제한적으로 양산된다. 이 논문에서는 모노머 단백질의 3차원 패치 계산을 통하여 구조가 알려진 복합체의 상호작용사이트와 비상호작용사이트에 대한 패치 속성을 추출하고 이를 기반으로 Support Vector Machine (SVM) 분류기법을 이용한 예측 모델 개발을 제시한다. 타겟 클래스의 데이터 불균형 문제 해결을 위해 under-sampling 기법을 이용한다. 사용된 패치속성은 2차 구조 요소와 아미노산 구성으로부터 총 9개가 추출된다. 147개의 단백질 복합체에 대해서 10 fold cross validation을 통해서 다양한 분류모델의 성능 평가를 하였다. 평가한 분류 모델 중 SVM은 92.7%의 높은 정확성을 보이고 이를 이용하여 분류 모델을 개발하였다.

Visualizing the distributions and spatiotemporal changes of metabolites in Panax notoginseng by MALDI mass spectrometry imaging

  • Sun, Chenglong;Ma, Shuangshuang;Li, Lili;Wang, Daijie;Liu, Wei;Liu, Feng;Guo, Lanping;Wang, Xiao
    • Journal of Ginseng Research
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    • 제45권6호
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    • pp.726-733
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    • 2021
  • Background: Panax notoginseng is a highly valued medicinal herb used widely in China and many Asian countries. Its root and rhizome have long been used for the treatment of cardiovascular and hematological diseases. Imaging the spatial distributions and dynamics of metabolites in heterogeneous plant tissues is significant for characterizing the metabolic networks of Panax notoginseng, and this will also provide a highly informative approach to understand the complex molecular changes in the processing of Panax notoginseng. Methods: Here, a high-sensitive MALDI-MS imaging method was developed and adopted to visualize the spatial distributions and spatiotemporal changes of metabolites in different botanical parts of Panax notoginseng. Results: A wide spectrum of metabolites including notoginsenosides, ginsenosides, amino acids, dencichine, gluconic acid, and low-molecular-weight organic acids were imaged in Panax notoginseng rhizome and root tissues for the first time. Moreover, the spatiotemporal alterations of metabolites during the steaming of Panax notoginseng root were also characterized in this study. And, a series of metabolites such as dencichine, arginine and glutamine that changed with the steaming of Panax notoginseng were successfully screened out and imaged. Conclusion: These spatially-resolved metabolite data not only enhance our understanding of the Panax notoginseng metabolic networks, but also provide direct evidence that a serious of metabolic alterations occurred during the steaming of Panax notoginseng.

Gene Expression Analysis and Polymorphism Discovery to Investigate Drought Responsive System in Tropical Maize

  • Song, Kitae;Kim, Hyo Chul;Kim, Kyung-Hee;Moon, Jun-Cheol;Kim, Jae Yoon;Lee, Sang-Kyu;Lee, Byung-Moo
    • Plant Breeding and Biotechnology
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    • 제6권4호
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    • pp.354-362
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    • 2018
  • Maize has high food and industrial value, whereas has difficulties in research because of their complex and huge size genome. Nested association mapping (NAM) was constructed to better understand maize genetics. However, most studies were conducted using the reference genome B73, and only a few studies were conducted on tropical maize. Ki3, one of the founder lines of the NAM population, is a tropical maize. We analyzed the genetic characteristics of Ki3 by using RNA sequencing and bioinformatics tools for various genetic studies. As results, a total of 30,526 genes were expressed, and expression profile were constructed. A total of 1,558 genes were differentially expressed in response to drought stress, and 513 contigs of them come from de novo assemblies. In addition, high-density polymorphisms including 464,930 single nucleotide polymorphisms (SNPs), 21,872 multiple nucleotide polymorphisms (MNPs) and 93,313 insertions and deletions (InDels) were found compared to reference genome. Among them, 15.0 % of polymorphisms (87,838) were passed non-synonymous test which could alter amino acid sequences. The variants have 66,550 SNPs, 5,853 MNPs, and 14,801 InDels, also proportion of homozygous type was higher than heterozygous. These variants were found in a total of 15,643 genes. Of these genes, 637 genes were found as differentially expressed genes (DEGs) under drought stress. Our results provide a genome-wide analysis of differentially expressed genes and information of variants on expressed genes of tropical maize under drought stress. Further characterization of these changes in genetic regulation and genetic traits will be of great value for improvement of maize genetics.

단백질 2차 구조를 이용한 유사 GPCR 검출에 관한 연구 (A Study on the Detection of Similarity GPCRs by using protein Secondary structure)

  • 구자효;한찬명;윤영우
    • 한국컴퓨터정보학회논문지
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    • 제14권1호
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    • pp.73-80
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    • 2009
  • GPCR(Gprotein-coupled receptors) 패밀리(family)는 세포막 단백질로서, 외부 신호를 세포막을 경유하여 세포 내로 전달하는 신호전달 기전에서 중요한 역할을 담당한다. 그러나 GPCR마다 다양하고 복잡한 조절기전을 보이며 매우 특이적인 신호전달 기전을 가지는 것으로 알려져 있다. GPCR의 구조적인 특징과 패밀리 및 서브패밀리 등은 기능별로 잘 알려져 있는데 과거 GPCR을 찾아내는 연구 중에 가장 기본이 되는 일이 주어진 단백질 서열로부터 GPCR을 분류하는 일이다. 이미 발견된 GPCR들을 가지고 수학적인 모델을 이용하여 보다 정확하게 분류하는 연구가 주로 진행되어 왔다. 본 논문에서는 단백질의 기능이 입체적 구조에 의해 결정되는 점에 착안하여 두 GPCR의 아미노산 서열의 유사도가 낮은 경우에 그 2차 구조의 서열을 비교함으로써 기존의 발견된 GPCR의 데이터베이스에서 동일한 기능을 가졌을 것으로 추정되는 미지의 GPCR을 검출하는 방법을 제안한다.

Identification of the mechanism for dehalorespiration of monofluoroacetate in the phylum Synergistota

  • Lex E. X. Leong;Stuart E. Denman;Seungha Kang;Stanislas Mondot;Philip Hugenholtz;Chris S. McSweeney
    • Animal Bioscience
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    • 제37권2_spc호
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    • pp.396-403
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    • 2024
  • Objective: Monofluoroacetate (MFA) is a potent toxin that blocks ATP production via the Krebs cycle and causes acute toxicity in ruminants consuming MFA-containing plants. The rumen bacterium, Cloacibacillus porcorum strain MFA1 belongs to the phylum Synergistota and can produce fluoride and acetate from MFA as the end-products of dehalorespiration. The aim of this study was to identify the genomic basis for the metabolism of MFA by this bacterium. Methods: A draft genome sequence for C. porcorum strain MFA1 was assembled and quantitative transcriptomic analysis was performed thus highlighting a candidate operon encoding four proteins that are responsible for the carbon-fluorine bond cleavage. Comparative genome analysis of this operon was undertaken with three other species of closely related Synergistota bacteria. Results: Two of the genes in this operon are related to the substrate-binding components of the glycine reductase protein B (GrdB) complex. Glycine shares a similar structure to MFA suggesting a role for these proteins in binding MFA. The remaining two genes in the operon, an antiporter family protein and an oxidoreductase belonging to the radical S-adenosyl methionine superfamily, are hypothesised to transport and activate the GrdB-like protein respectively. Similar operons were identified in a small number of other Synergistota bacteria including type strains of Cloacibacillus porcorum, C. evryensis, and Pyramidobacter piscolens, suggesting lateral transfer of the operon as these genera belong to separate families. We confirmed that all three species can degrade MFA, however, substrate degradation in P. piscolens was notably reduced compared to Cloacibacillus isolates possibly reflecting the loss of the oxidoreductase and antiporter in the P. piscolens operon. Conclusion: Identification of this unusual anaerobic fluoroacetate metabolism extends the known substrates for dehalorespiration and indicates the potential for substrate plasticity in amino acid-reducing enzymes to include xenobiotics.

Aspergillus fumigatus에서 Methyltransferase 유전자 AfuvipB와 AfuvipC의 분리 및 분석 (Isolation and Characterization of Two Methyltransferase Genes, AfuvipB and AfuvipC in Aspergillus fumigatus)

  • 모하메드;한갑훈
    • 한국균학회지
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    • 제43권1호
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    • pp.33-39
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    • 2015
  • 사상성 진균에서 veA 유전자와 연계되어 있는 velvet 복합체는 진균의 분화와 이차 대사산물의 조절에 매우 중요한 기능을 한다. 모델 사상균인 Aspergillus nidulans의 경우 methyltransferase인 VipB와 VipC를 포함한 여러 단백질들이 VeA 단백질과 상호작용하는 것으로 알려져 있다. 본 연구에서는 인간 기회감염 진균인 Aspergillus fumigatus에서 vipB와 vipC 유전자의 상동유전자를 분리하여 각각 AfuvipB와 AfuvipC로 명명하였다. AfuvipB 유전자는 AspGD 데이터베이스에 Afu3g14920으로 등록되어 있으며 1,510 bp 길이에 10개의 인트론을 가지고 있고, 유전자 산물은 336 아미노산 잔기로 구성된 단백질로 methyltransferase 도메인을 가지고 있었다. AfuvipC는 Afu8g01930으로 AfuvipB와 유사하게 10개의 인트론을 가지고 있으며 339개의 아미노산으로 구성된 methyltransferase를 암호화하고 있었다. A. fumigatus에서 각각의 유전자에 대한 기능을 알아보고자 유전자제거 돌연변이 균주들을 제조하고 그들의 표현형을 관찰하였다. AfuvipB 유전자 제거 돌연변이는 점 접종을 하였을 경우 대조군에 비하여 표현형의 차이를 보이지 않았다. 그러나 단일 포자에서 성장한 콜로니를 비교해 보았을 때 대조군에 비하여 그 크기가 작고 분화 속도도 약간 더딘 것을 관찰할 수 있었다. 반면에 AfuvipC 유전자 제거 돌연변이는 대조군과 비교하였을 때 표현형의 차이를 보이지 않았다. 이러한 결과는 두 개의 methyltransferase가 상호 중복적인 역할을 수행하거나 정상적인 실험실 배양조건에서는 중요한 기능을 수행하지 않을 수 있음을 시사한다.

다시마와 표고버섯 혼합조미농축액 첨가에 따른 돌산갓김치의 품질특성 (Quality Characteristics of Dolsan Leaf Mustard Kimchi Added with Seasoning of Sea tangle and Lentinus edodes)

  • 오선경;김기웅;박욱민;김남희;배상옥;최명락
    • 생명과학회지
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    • 제25권5호
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    • pp.557-567
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    • 2015
  • 고부가가치 돌산갓 김치를 개발하고자 다시마를 주원료로 한 혼합조미농축액(CSS)과 표고버섯을 주원료로 한 혼합조미농축액 (CSL)을 첨가하여 각각 GK-A, GK-B 2종의 갓김치를 제조하였다. $4^{\circ}C$, 80일간 발효실험을 한 결과 GK-A군이 무기질, 식이섬유 함량이 높고 pH저하 및 산도 상승 지연 효과를 나타내었다. 염도는 70일째 이후 유의적 차이는 없었고, 환원당 함량은 대조군 보다 조미농축액 첨가군이 높게 나타났다. 유산균 Leuconostoc sp. 균수는 실험군이 대조군에 비하여 많았고, 적숙기를 지나면서 증가하는 Lactobacillus sp.는 대조군이 발효 20일째부터 증가하였다. 명도는 담근 초기에서 30일까지는 대조군이 높고, 황색도는 GK-B군이 20일부터 높아져 갈변 가능성이 높았다. 경도는 GK-A군이 담금 초기와 10일째 높은 수치를 나타내었다. 유리아미노산 GK-A군이 aspartic acid과 glutamic acid 함량이 전 기간에서 유의적으로 높았다(p<0.05). 단맛계 아미노산의 함량은 GK-A군이 발효 0일, 10일, 30일째 함량에서 다른 군에 비해 유의적으로 높은 수준을 나타내었다(p<0.05). 관능검사 결과는 GK-A가 가장 기호도가 우수하였다. 이상의 결과를 종합적으로 검토한 결과, 다시마를 주원료로 하여 만든 혼합조미농축액 CSS를 90 g 첨가하여 담근 GK-A군이 소비자에게 맛과 영양을 제공할 수 있는 새로운 돌산갓김치 상품으로 가능성이 있을 것으로 기대된다.

Neuronal injury in AIDS dementia: Potential treatment with NMDA open-channel blockers and nitric oxide-related species

  • Lipton, Stuart A.
    • 한국응용약물학회:학술대회논문집
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    • 한국응용약물학회 1996년도 춘계학술대회
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    • pp.19-29
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    • 1996
  • The neurological manifestations of AIDS include dementia, encountered even in the absence of opportunistic superinfection or malignancy. The AIDS Dementia Complex appears to be associated with several neuropathological abnormalities, including astrogliosis and neuronal injury or loss. How can HIV-1 result in neuronal damage if neurons themselves are only rarely, if ever, infected by the vitus\ulcorner In vitro experiments from several different laboratiories have lent support to the existence of HIV- and immune-related toxins. In one recently defined pathway to neuronal injury, HIV-infected macrophages/microglia as well as macrophages activated by HIV-1 envelope protein gp120 appear to secrete excitants/neurotoxins. These substances may include arachidonic acid, platelet-activating factor, free radicals (NO - and O$_2$), glutamate, quinolinate, cysteine, cytokines (TNF-${\alpha}$, IL1-B, IL-6), and as yet unidentified factors emanating from stimulated macrophages and possibly reactive astrocytes. A final common pathway for newonal suscepubility appears to be operative, similar to that observed in stroke, trauma, epilepsy, and several neurodegenerative diseases, including Huntington's disease, Parkinson's disease, and amyotrophic lateral sclerosis. This mechanism involves excessive activation of N-methyl-D-aspartate (NMDA) receptor-operated channels, with resultant excessive influx of Ca$\^$2+/ leading to neuronal damage, and thus offers hope for future pharmacological intervention. This chapter reviews two clinically-tolerated NMDA antagonists, memantine and nitroglycerin; (ⅰ) Memantine is an open-channel blocker of the NMDA-associated ion channel and a close congener of the anti-viral and anti-parkinsonian drug amantadine. Memantine blocks the effects of escalating levels of excitotoxins to a greater degree than lower (piysiological) levels of these excitatory amino acids, thus sparing to some extent normal neuronal function. (ⅱ) Niuoglycerin acts at a redox modulatory site of the NMDA receptor/complex to downregulate its activity. The neuroprotective action of nitroglycerin at this site is mediated by n chemical species related to nitric oxide, but in a higher oxidation state, resulting in transfer of an NO group to a critical cysteine on the NMDA receptor. Because of the clinical safety of these drugs, they have the potential for trials in humans. As the structural basis for redox modulation is further elucidated, it may become possible to design even better redox reactive reagents of chinical value. To this end, redox modulatory sites of NMDA receptors have begun to be characterized at a molecular level using site-directed mutagenesis of recombinant subunits (NMDAR1, NMDAR2A-D). Two types of redox modulation can be distinguished. The first type gives rise to a persistent change in the functional activity of the receptor, and we have identified two cysteine residues on the NMDARI subunit (#744 and #798) that are responsible for this action. A second site, presumably also a cysteine(s) because <1 mM N-ethylmaleimide can block its effect in native neurons, underlies the other, more transient redox action. It appears to be at this, as yet unidentified, site on the NMDA receptor that the NO group acts, at least in recombinant receptors.

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Effects of Lactobacilli on the Performance, Diarrhea Incidence, VFA Concentration and Gastrointestinal Microbial Flora of Weaning Pigs

  • Huang, Canghai;Qiao, Shiyan;Li, Defa;Piao, Xiangshu;Ren, Jiping
    • Asian-Australasian Journal of Animal Sciences
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    • 제17권3호
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    • pp.401-409
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    • 2004
  • Two experiments were conducted to evaluate the effects of a complex Lactobacilli preparation on performance, resistance to E. coli infection and gut microbial flora of weaning pigs. In exp. 1, twelve pigs (7.65$\pm$1.10 kg BW), weaned at 28 d, were randomly allotted into 2 groups and placed in individual metabolic cages. During the first 7 d, one group of pigs was provided ad libitum access to water containing $10^5$ colony forming units (CFU) Lactobacilli per ml and the control group was provided tap water. The Lactobacilli preparation included Lactobacillus gasseri, L. reuteri, L. acidophilus and L. fermentum, which were isolated from the gastrointestinal (GI) tract mucosa of weaning pigs. On d 8, 20 ml of $10^8$ CFU/ml E. coli solution (serovars K99, K88 and 987P at the ratio of 1:1:1) was orally administered to each pig. Diarrhea scores and diarrhea incidence were recorded from d 7 to 14. On d 14, pigs were euthanized and digesta and mucosa from the stomach, duodenum, jejunum, ileum, cecum and colon were sampled using aseptic technique to determine microflora by culturing bacteria in selective medium. The results showed that Lactobacilli treatment significantly decreased E. coli and aerobe counts (p<0.01) but increased Lactobacilli and anaerobe counts (p<0.01) in digesta and mucosa of most sections of the GI tract. A 66 and 69.1% decrease in diarrhea index and diarrhea incidence, respectively, was observed in the Lactobacilli treated group. In exp. 2, Thirty-six crossbred Duroc$\times$Landrace$\times$Yorkshire piglets, weaned at 28$\pm$2 days, were selected and randomly allocated into 2 groups. There were 18 piglets in each group, 3 piglets in one pen and 6 replicates in each treatment with 3 pens of barrow and 3 pens of female piglet in each treatment. Piglets had ad libitum access to feed and water. The initial body weight of piglet was 7.65$\pm$1.09 kg. Dietary treatments included a non-medicated basal diet with Lactobacilli ($10^5$ CFU/g diet) or carbadox (60 mg/kg) as control. On d 21, six pigs per group (one pig per pen) were euthanized. Ileal digesta was collected to determine apparent amino acid digestibility. Microflora content was determined similarly to exp.1. The results showed that Lactobacilli treatment significantly improved average daily feed intake (ADFI) of pigs compared to carbadox (p<0.05) during the first 2 wks after weaning and average daily gain (ADG) and ADFI increased significantly (p<0.05) from d 8 to 14. Nitrogen and total phosphorus digestibility also increased (p<0.05). Bacterial counts were similar to exp. 1. The results indicate that the complex Lactobacilli preparation improved performance for 2 wks after weaning, enhanced resistance to E. coli infection, and improved microbial balance in the GI tract.