• 제목/요약/키워드: alignment matrix

Search Result 100, Processing Time 0.027 seconds

Identification of differentially expressed genes in the developmental stages from olive flounder Paralichthys olivaceus using an annealing control primer system

  • Kim, Young-Ok;Park, Eun-Mi;Nam, Bo-Hye;Kong, Hee-Jeong;Kim, Woo-Jin;Noh, Jae-Koo;Lee, Sang-Jun;Kim, Kyung-Kil
    • Animal cells and systems
    • /
    • v.14 no.1
    • /
    • pp.25-30
    • /
    • 2010
  • We employed a new and improved differential display reverse transcription-polymerase chain reaction (DDRT-PCR) method, which involves annealing control primers (ACPs), to identify the genes that are specifically or prominently expressed in olive flounder (Paralichthys olivaceus) juveniles (35 days post-hatch; dph) compared to larval-stage (dph 21) flounder. Using 60 ACPs, we identified eight differentially expressed genes (DEGs) and basic local alignment search tool (BLAST) searches revealed eight known genes. Gene expression levels were confirmed by RT-PCR. Phosphoglucose isomerase (PGI) was highly expressed at 21 dph, while nephrosin, myosin light chain (MLC), myosin heavy chain (MHC), carboxypeptidase A, chymotrypsin B, fish-egg protein, and matrix protein were expressed at 35 dph. PGI, MLC, and MHC expression was further analyzed by RT-PCR. The differentially expressed genes identified in this study may provide insights into the molecular basis of development in olive flounder.

Nucleotide sequence analysis of the 5S ribosomal RNA gene of the mushroom tricholoma matsutake

  • Hwang, Seon-Kap;Kim, Jong-Guk
    • Journal of Microbiology
    • /
    • v.33 no.2
    • /
    • pp.136-141
    • /
    • 1995
  • From a cluster of structural rRNA genes which has previsouly been cloned (Hwang and Kim, in submission; J. Microbiol. Biotechnol.), a 1.0-kb Eco RI fragment of DNA which shows significant homology to the 25S and rRNA s of Tricholoma matsutake was used for sequence analysis. Nucleotide sequence was bidirectionally determined using delection series of the DNA fragment. Comparing the resultant 1016-base sequence with sequences in the database, both the 3'end of 25S-rRNA gene and 5S rRNA gene were searched. The 5S rRNA gene is 118-bp in length and is located 158-bp downstream of 3'end of the 25S rRNA gene. IGSI and IGS2 (partial) sequences are also contained in the fragment. Multiple alignment of the 5S rRNA sequences was carried out with 5S rRNA sequences from some members of the subdivision Basidiomycotina obtained from the database. Polygenetic analysis with distance matrix established by Kimura's 2-parameter method and phylogenetic tree by UPGMA method proposed that T. matsutake is closely related to efibulobasidium allbescens. Secondary structure of 5S rRNA was also hypothesized to show similar topology with its generally accepted eukaryotic counterpart.

  • PDF

Analysis of Initial Activation and Checkout Results of Attitude Sensor Star Trackers for a LEO Satellite (저궤도 위성의 자세센서 별 추적기 초기 운용 분석)

  • Yim, Jo Ryeong;Choi, Hong-Taek
    • Aerospace Engineering and Technology
    • /
    • v.11 no.2
    • /
    • pp.87-95
    • /
    • 2012
  • This technical paper describes the analysis results of telemetry data for the initial activation of star trackers for an agile high accuracy low earth orbit satellite. The satellite was recently launched and is in the Launch and Early Operation Phases. It uses two SED36 star trackers manufactured by SODERN. The star tracker is separated by three parts, an optical head, an electronics box, and a baffle with maintaining optical head base plate temperature 20 degC in order to achieve the better performance in low frequency error. This paper presents the initial activation status, requirements and performance, anomaly occurrence, and noise equivalent angle performance analysis during the mission mode by processing the telemetry data.

Mechanical Property of Cabon Nanofiber/Polypropylene Composites by Melt-mixing Process (압출공정에 의한 탄소나노섬유/폴리프로필렌 복합재료의 기계적 특성)

  • Byeon, Jun-Hyeong;Lee, Sang-Gwan;Eom, Mun-Gwan;Min, Gyeong-Sik;Song, Jae-Eun;Lee, Chang-Hun
    • Proceedings of the Korean Society For Composite Materials Conference
    • /
    • 2005.11a
    • /
    • pp.125-128
    • /
    • 2005
  • The dispersion of carbon nanofiber (CNF) was carried out by solution blending, mechanical mixing, and sonication. CNFs at levels of 5-50% fiber weight content were mixed with polypropylene (PP) powder, and then were melt-mixed using a twin-screw extruder. For the further alignment of fibers, extruded rods were stacked uni-directionally in the mold cavity for the compression molding. For the evaluation of mechanical properties of nanocomposites, tension, in-plane shear, and flexural tests were conducted. CNF/PP composites clearly showed reinforcing effect in the longitudinal direction. The tensile modulus and strength have improved by 100% and 40%, respectively for 50 % fiber weight content, and the flexural modulus and strength have increased by 120% and 25%, respectively for the same fiber weight content. The shear modulus showed 65% increase, but the strength dropped sharply by 40%. However, the property enhancement was not significant due to the poor adhesion between fiber and matrix. In the transverse direction, the tensile, flexural, and shear strength decreased as more fibers were added.

  • PDF

Calculation of Transverse Vibration of Ship`s Propulsion Shaftings by the Finite Element Method (有限要素法에 의한 推進軸系의 광振動計算에 관한 硏究)

  • Jeon, Hio-Jung;Kim, Hi-Cheol
    • Journal of Advanced Marine Engineering and Technology
    • /
    • v.3 no.1
    • /
    • pp.2-18
    • /
    • 1979
  • Due to increasing ship dimensions and installed propulsive power, resonance frequencies of the propeller shaft system tend to decrease and they can appear in some cases within the operating range of the shaft revolution. For calculation of transverse shaft vibrations, various methods have been proposed but as they are mainly for approximate calculation, no contented results are obtained. For fairly accurate estimation of resonance frequencies in the design stage, one can use transfer matrix method of the finite element method and former is rather prefered in ordinary cases. In this study, the finite element method which is utilized for calculation of the propulsion shaft alignment, is introduced to derive the vibration equation of the ship's propulsion shaftings. The digital computer program is developed to solve the above equation, and the details of preparing the input data are described. The method presented in the underlying report was applied to the shafting of ship which has a lignumvitae bearing to verify its reliability and the results of calculation and those of the measurements on rotating shaft show a good agreement. Calculating methods of exciting of forces and damping forces are also discussed for future work.

  • PDF

Self-Aligned Offset Poly-Si TFT using Photoresist reflow process (Photoresist reflow 공정을 이용한 자기정합 오프셋 poly-Si TFT)

  • Yoo, Juhn-Suk;Park, Cheol-Min;Min, Byung-Hyuk;Han, Min-Koo
    • Proceedings of the KIEE Conference
    • /
    • 1996.07c
    • /
    • pp.1582-1584
    • /
    • 1996
  • The polycrystalline silicon thin film transistors (poly-Si TFT) are the most promising candidate for active matrix liquid crystal displays (AMLCD) for their high mobilities and current driving capabilities. The leakage current of the poly-Si TFT is much higher than that of the amorphous-Si TFT, thus larger storage capacitance is required which reduces the aperture ratio fur the pixel. The offset gated poly-Si TFTs have been widely investigated in order to reduce the leakage current. The conventional method for fabricating an offset device may require additional mask and photolithography process step, which is inapplicable for self-aligned source/drain ion implantation and rather cost inefficient. Due to mis-alignment, offset devices show asymmetric transfer characteristics as the source and drain are switched. We have proposed and fabricated a new offset poly-Si TFT by applying photoresist reflow process. The new method does not require an additional mask step and self-aligned ion implantation is applied, thus precise offset length can be defined and source/drain symmetric transfer characteristics are achieved.

  • PDF

Evaluation of the periodontal regenerative properties of patterned human periodontal ligament stem cell sheets

  • Kim, Joong-Hyun;Ko, Seok-Yeong;Lee, Justin Ho;Kim, Deok-Ho;Yun, Jeong-Ho
    • Journal of Periodontal and Implant Science
    • /
    • v.47 no.6
    • /
    • pp.402-415
    • /
    • 2017
  • Purpose: The aim of this study was to determine the effects of patterned human periodontal ligament stem cell (hPDLSC) sheets fabricated using a thermoresponsive substratum. Methods: In this study, we fabricated patterned hPDLSC sheets using nanotopographical cues to modulate the alignment of the cell sheet. Results: The hPDLSCs showed rapid monolayer formation on various surface pattern widths. Compared to cell sheets grown on flat surfaces, there were no significant differences in cell attachment and growth on the nanopatterned substratum. However, the patterned hPDLSC sheets showed higher periodontal ligamentogenesis-related gene expression in early stages than the unpatterned cell sheets. Conclusions: This experiment confirmed that patterned cell sheets provide flexibility in designing hPDLSC sheets, and that these stem cell sheets may be candidates for application in periodontal regenerative therapy.

Effect of Hot Extrusion on the Mechanical Properties of 6061 Aluminum Alloy composites Reinforced with SiC whisker (SiC휘스커로 강화한 6061 Al합금 복합재료의 기계적 특성에 미치는 열간압출의 영향)

  • Kim, Jun-Su;Lim, Su-Geun
    • Journal of Korea Foundry Society
    • /
    • v.16 no.2
    • /
    • pp.132-140
    • /
    • 1996
  • Both cast and extruded composites of SiC whisker reinforced 6061 Al alloy matrix were fabricated by high pressure infiltration of the alloy melt into the SiC preform and subsequent hot extrusion of the composite ingots. The micro structures, age hardening behavior and mechanical properties have been examined on the both cast and extruded composites of SiCw/6061. The cast composites of SiCw/6061 were obtained in which SiC whiskers were randomly oriented. Hot extrusion of these cast composites lead to alignment of the whisker in the direction of extrusion. Strengthening effect of whisker in the extruded composites is lower than that of the cast composites. The cast composites of SiCw/6061 showed higher thensile strength and lower elongation than extruded composites of SiCw/6061 at all testing temperatures. Lower tensile strength and higher elongation of the extruded composites were attributable to fine grain structures in which grain boundary sliding occruued preferentially at elevated temperatures.

  • PDF

Melt Textured Growth and Superconducting Properties of RE3+ Elements Doped YBCO Superconductors (RE3+원소가 첨가된 YBCO고온초전도체의 용융성장 및 초전도 특성)

  • 김소정
    • Journal of the Korean Institute of Electrical and Electronic Material Engineers
    • /
    • v.16 no.3
    • /
    • pp.231-237
    • /
    • 2003
  • RE(Nd, Sm) elements doped (RE/Y)$_{1.8}$B $a_{2.4}$C $u_{3.4}$$O_{7-x}$ [(RE/Y)1.8] high $T_{c}$ superconductors were directionally grown by Top Seed Melt Growth(TSMG) process in air atmosphere. The (001)melt-textured N $d_{1.8}$B $a_{2.4}$C $u_{3.4}$ $O_{7-X}$(Nd1.8) seed crystals were used for achieving the c-axis alignment large grains perpendicular to surface of the samples. The (RE/Y)1.8 SEM micrographs of the melt-textured (RE/Y)1.8 samples revealed that the nonsuperconducting (RE/Y)211 inclusions are uniformly distributed in the superconducting (RE/Y)123 matrix except the region very close to the Nd seed crystal. The microstructure and superconducting properties were investigated by XRD, SEM, TEM and SQUID magnetometer. The Melt-textured (RE/Y)1.8 samples showed an onset $T_{c}$=91K and sharp superconducting transition. Also, the magnetization value of the (RE/Y)1.8 samples were compared with those of Y1.8 sample at 77 K. 77 K. 77 K. 77 K.K.

Microstructure and Superconducting Properties of (Sm/Y)-Ba-Cu-O Superconductor by Rod-type Seed Melt Growth (Rod-type 종자결정성장법을 이용한 (Sm/Y)-Ba-Cu-O계 초전도체의 미세구조 및 초전도특성)

  • 김소정
    • Journal of the Korean Institute of Electrical and Electronic Material Engineers
    • /
    • v.16 no.4
    • /
    • pp.336-342
    • /
    • 2003
  • (Sm/Y)$_{1.8}$B $a_{2.4}$C $u_{3.4}$$O_{7-x}$ [(Sm/Y)1.8] high $T_{c}$ superconductors were directionally grown by Rod-type Seed Melt Growth(RSMG) process in air atmosphere. The sintered polycrystalline N $d_{1.8}$B $a_{2.4}$C $u_{3.4}$$O_{7-x}$(Nd1.8) of rod-type seed crystal grown by extrusion mold process were used for achieving the ab-plane alignment haying large grains perpendicular to the center of (Sm/Y)1.8 samples. The observations using TEM micrographs of the melt-textured (Sm/Y)1.8 samples revealed that the nonsuperconducting (Sm/Y)211 inclusions are uniformly distributed in the superconducting (Sm/Y)123 matrix. The microstructure and superconducting properties were investigated by XRD, TEM and SQUID magnetometer. The RSMG (Sm/Y)1.8 samples showed an onset $T_{c}$ $\geq$ 90 K and sharp superconducting transition.nsition.ion.nsition.