• 제목/요약/키워드: agricultural methods

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Use of Terminal Restriction Length Polymorphism (T-RFLP) Analysis to Evaluate Uncultivable Microbial Community Structure of Soil

  • Chauhan, Puneet Singh;Shagol, Charlotte C.;Yim, Woo-Jong;Tipayno, Sherlyn C.;Kim, Chang-Gi;Sa, Tong-Min
    • 한국토양비료학회지
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    • 제44권1호
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    • pp.127-145
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    • 2011
  • Various environmental ecosystems are valuable sources for microbial ecology studies, and their analyses using recently developed molecular ecological approaches have drawn significant attention within the scientific community. Changes in the microbial community structures due to various anthropogenic activities can be evaluated by various culture-independent methods e.g. ARISA, DGGE, SSCP, T-RFLP, clone library, pyrosequencing, etc. Direct amplification of total community DNA and amplification of most conserved region (16S rRNA) are common initial steps, followed by either fingerprinting or sequencing analysis. Fingerprinting methods are relatively quicker than sequencing analysis in evaluating the changes in the microbial community. Being an efficient, sensitive and time- and cost effective method, T-RFLP is regularly used by many researchers to access the microbial diversity. Among various fingerprinting methods T-RFLP became an important tool in studying the microbial community structure because of its sensitivity and reproducibility. In this present review, we will discuss the important developments in T-RFLP methodology to distinguish the total microbial diversity and community composition in the various ecosystems.

살모넬라균 검출을 위한 임피던스 바이오센서의 항체 고정화 방법 평가 (Evaluation of Antibody Immobilization Methods for Detection of Salmonella using Impedimetric Biosensor)

  • 김기영;문지혜;엄애선;양길모;모창연;강석원;조한근
    • Journal of Biosystems Engineering
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    • 제34권4호
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    • pp.254-259
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    • 2009
  • Conventional methods for pathogen detection and identification are labor-intensive and take several days to complete. Recently developed biosensors have shown potential for the rapid detection of foodborne pathogens. In this study, an impedimetric biosensor was developed for rapid detection of Salmonella typhimurium. To develop the biosensor, an interdigitated microelectrode (IME) was fabricated by using semiconductor fabrication process. Anti-Salmonella antibodies were immobilized based on either avidin-biotin binding or self assembled monolayer (SAM) on the surface of the IME to form an active sensing layer. To evaluate effect of antibody immobilization methods on sensitivity of the sensor, detection limit of the biosensor was analyzed with Salmonella samples innoculated in phosphate buffered saline (PBS) or food extract. The impedimetric biosensor based on SAM immobilization method produced better detection limit. The biosensor could detect 107 CFU/mL of Salmonella in pork meat extract. This method may provide a simple, rapid, and sensitive method to detect foodborne pathogens.

무선발표지 형질전환 식물체 제조기술 (Principal methods to produce marker-free GM plants)

  • 우희종;신공식;이기종;권순종;조용구;서석철
    • Journal of Plant Biotechnology
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    • 제37권2호
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    • pp.212-219
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    • 2010
  • Selectable marker gene systems are vital for the development of transgenic plants, but the presence of selectable marker genes encoding antibiotic or herbicide resistance in genetically modified plants poses a number of problems. A lot of research results and various techniques have been developed to produce marker-free GM plants. The aim of this review is to describe the principal methods used for eliminating selectable marker genes to generate marker-free GM plants, concentrating on the three significant methods(co-transformation, site-specific recombinase-mediated excision, non-selected transformation) in several marker-free techniques.

고종시 감껍질의 추출조건에 따른 항산화 활성 (Changes in the Antioxidant Potential of Persimmon Peel Extracts Prepared by Different Extraction Methods)

  • 정명진;진순우;화성용;방희옥;한동문;전지영;화세경
    • 한국약용작물학회지
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    • 제27권3호
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    • pp.186-193
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    • 2019
  • Background: Astringent persimmon (Diospyros kaki Thunb. cv. Kojongsi) peels are by-products of dried persimmons. This study aimed to evaluate the antioxidant activities of Kojongsi persimmon peel (KPP) extracts prepared by 15 different extraction methods: 5 heating durations (0.5 - 2.5 h) at 3 heating temperatures (50, 70, and $90^{\circ}C$). Methods and Results: An increase in heating temperature increased the antioxidant effect of KPP extracts. Those prepared by heating at 1 h had the highest total phenol content, regardless of the heating temperature. In addition, the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity and cell-protective effects against $H_2O_2-induced$ oxidative stress were dependent on the total phenol contents of the extract. However, the KPP-induced increased in catalase expression was dependent on heating temperature and duration. Conclusions: These results suggest that extraction by heating at $90^{\circ}C$ for 1 h may enhance KPP's antioxidant effects, which mainly involve non-enzymatic antioxidant systems.

혐기성 소화액의 농지환원에 따른 질소 거동 (Assessment of Nitrogen Fate in the Soil by Different Application Methods of Digestate)

  • 은콤보 로리 리셋 시미;홍성구
    • 한국농공학회논문집
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    • 제63권3호
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    • pp.35-45
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    • 2021
  • Digestate or slurry produced from anaerobic digestion is mostly applied to crop lands for its disposal and recovering nutrients. However, minimizing nitrogen losses following field application of the digestate is important for maximizing the plant's nitrogen uptake and reducing environmental concerns. This study was conducted to assess the effects of three different biogas digestate application techniques (sawdust mixed with digestate (SSD), the hole application method (HA), and digestate injected in the soil (SD)) on nitrate leaching potential in the soil. A pot laboratory experiment was conducted at room temperature of 25 ± 2 ℃ for 107 days. The experimental results showed that sawdust application method turned out to be appropriate for quick immobilization of surplus N in the form of microbial biomass N, reflecting its lower total nitrogen and NH4-N contents and low pH. The NH4-N and total nitrogen fate in the soil fertilized with manure showed no statistically significant (p > 0.05) differences between the different methods applied during the incubation time under room temperature. In contrast, NO3-N concentration indicates significant reduction in sawdust treatment (p < 0.05) compared to the control and other application methods. However, the soil sawdust mixed with digestate was more effective than the other methods, because of the cumulative labile carbon contents of the amendment, which implies soil net N immobilization.

단감의 당도예측모델 개발에 관한 연구 (Development of Prediction Models for Nondestructive Measurement of Sugar Content in Sweet Persimmon)

  • 손재룡;이강진;강석원;김기영;양길모;모창연;서영욱
    • Journal of Biosystems Engineering
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    • 제34권3호
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    • pp.197-203
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    • 2009
  • This study was performed to develop a nondestructive determination technology for sugar content in sweet persimmons, and the main research results included the following. In order to determine sugar content in sweet persimmons, a dual side reflex was adopted, and the study was to measure sugar content using a reflectance spectrum for 2 parts because it was difficult to determine representative sugar content due to a great deviation in sugar content according to the part of sweet persimmons. To predict sugar contents of sweet persimmon, PLSR and PCR models were compared with a few preprocess methods. As a result, PLSR had $R^2$=0.67, SEP=0.42 brix, LV=11, and PCR had $R^2$=0.65, SEP=0.41 brix, PC=16. SNV method was the best among preprocess methods for predicting sugar contents.

필터링 기법을 이용한 농업용저수지 수위자료의 품질관리 방안 (Quality Control on Water-level Data in Agricultural Reservoirs Considering Filtering Methods)

  • 김경환;최규훈;정형모;주동혁;나라;최은혁;권재환;유승환
    • 한국농공학회논문집
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    • 제63권5호
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    • pp.83-93
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    • 2021
  • Agricultural reservoirs are important facilities for storing or managing water for the purpose of securing agricultural water, creating and expanding agricultural production bases, and using them to increase agricultural production. In particular, the Korea Rural Community Corporation (KRC) manages agricultural reservoirs scattered across the country, and officially recognizes and distributes hydrological data to increase their public utilization and aims to improve the value of water resources. Data on the water level of agricultural reservoirs are important. However, errors such as missing values and outliners limit utilization of the data in various fields of research and industry. Therefore, water quality data measures should be devised to increase reliability. this study categorized different error types and looked at automatic correction methods to enhance the reliability of the vast hydrological data. In addition, the water level data corrected from errors were compared to the reference hydrologic data through expert judgment in accordance with the quality control procedure, and the most appropriate measures were verified. As KRC manages more agricultural reservoirs than any other institution, the proposed method of efficient and automatic water level data correction in this study is expected to increase the availability and reliability of the hydrological data.