• Title/Summary/Keyword: Voxels

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Molecular Interaction Interface Computing Based on Voxel Map (복셀맵을 기반으로 한 분자 간 상호작용 인터페이스의 계산)

  • Choi, Jihoon;Kim, Byungjoo;Kim, Ku-jin
    • Journal of the Korea Computer Graphics Society
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    • v.18 no.3
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    • pp.1-7
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    • 2012
  • In this paper, we propose a method to compute the interface between protein molecules. When a molecules is represented as a set of spheres with van der Waals radii, the distance from a spatial point p to the molecule corresponds to the distance from p to the closet sphere. The molecular interface is composed of equi-distant points from two molecules. Our algorithm decomposes the space into a set of voxels, and then constructs a voxel map by storing the information of spheres intersecting each voxel. By using the voxel map, we compute the distance between a point and the molecule. We also use GPU for the parallel processing, and efficiently approximate the interface of a pair of molecules.

Comparison of Ictal-Interictal Subtraction and Statistical Parametric Mapping in Patients with Temporal Lobe Epilepsy

  • Rahyeong Juh;Taesuk Suh;Kim, Jaeseung;Daehyuk Moon
    • Proceedings of the Korean Society of Medical Physics Conference
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    • 2002.09a
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    • pp.335-337
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    • 2002
  • The aim of this study was investigate the epileptogenic zone in temporal lobe epilepsy (TLE). We evaluated the subtraction image of interictal SPECT from ictal SPECT coregistered to 3-dimensional (3D) MRI, and compared with the normal healthy SPECT using a SPM99. Forty-nine patients with TLE (M:F=28:21, mean age: 33${\pm}$2.1 years) underwent a pairs of ictal and interictal SPECT. We performed subtraction interictal SPECT from ictal SPECT in TLE patients. In addition, using SPM methods and t-statistics, SPECT images of the TLE patients were compared with normal healthy SPECT on a voxel by voxel basis. The voxels with a p-value of less than 0.05, 0.005, 0.001 were considered to be significantly different. The subtraction results by ictal and interictal SPECT coincided with the significant rCBF changes when compare of the normal healthy SPECT using a SPM99. The results suggested that analysis of difference of the two methods using healthy normal SPECT with SPM99 is useful tool in evaluation of seizure focus in epilepsy.

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Three Dimensional Target Volume Reconstruction from Multiple Projection Images

  • Cheong, Kwang-Ho;Suh, Tae-Suk;Lee, Hyoung-Koo;Choe, Bo-Young
    • Proceedings of the Korean Society of Medical Physics Conference
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    • 2002.09a
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    • pp.439-441
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    • 2002
  • The aim of this study is to reconstruct the 3D target volume from multiple projection images. It was assumed that we were already aware of the target position exactly, and all processes were performed in Target Coordinates whose origin was the center of the target. We used six projections: two projections were used to make a Reconstruction Box and four projections were for image acquisition. Reconstruction Box was made up of voxels of 3D matrix. Projection images were transformed into 3D volume in this virtual box using geometrical based back-projection method. Algorithm was applied to an ellipsoid model and horse-shoe shaped model. Projection images were created using C program language by geometrical method and reconstruction was also accomplished using C program language and Matlab(The Mathwork Inc., USA). For ellipsoid model, reconstructed volume was slightly overestimated but target shape and position was proved to be correct. For horse-shoe shaped model, reconstructed volume was somewhat different from original target model but there was a considerable improvement in target volume determination.

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An Efficient Rendering Method for Anisotropic Volume Data in 3D Medical Imaging (3차원 의학영상 처리에서 사용되는 비균등 볼륨 데이터를 위한 효율적인 렌더링 방법)

  • 김태영;신병석
    • Journal of Biomedical Engineering Research
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    • v.23 no.6
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    • pp.491-498
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    • 2002
  • In medical visualization fields, anisotropic volume data are more common than isotropic ones. In this paper, we propose an efficient rendering method for anisotropic volume data, which directly computes the intensity of intermediate samples by interpolating the intensity of two corresponding voxels on consecutive slices. Unlike conventional rendering method, it does not require a preprocessing step for generating intermediate slices or additional memory for storing them. In order to evaluate the validity and performance of our method, we applied the method to shear-warp rendering algorithm. Experimental results show that this method improves rendering speed without significantly sacrificing the image quality.

Correlation between Cognitive Performance Ability, Neural Activation Area and Neural Activation Intensity in fMRI (뇌기능 영상에서 인지 수행 능력, 신경 활성화 면적 신경 활성화 크기의 상관관계)

  • Sohn Jin Hun;Oh Chong Hyun;Tack Gye Rae;Yi Jeong Han;Lee Soo Yeol;Chung Soon Cheol
    • Journal of the Korean Society for Precision Engineering
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    • v.22 no.7 s.172
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    • pp.200-207
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    • 2005
  • This study compares two different methods of measuring brain-BOLD activation. By comparing two different methods of measurement i.e., one method calculating the neural activation area (the number of activated voxels), while the other measured the neural activation intensity (the mean intensity of selected activated yokels), this study identified the more precise method of measuring brain activation which results from the completion of a visuospatial task. 16 right-handed male college students (mean age 23.2 years) participated in this study as subjects. Functional brain images were scanned on them using a 3T MRI single-shot EPI method. No correlation was found between the levels of cognitive performance and number of activated yokels in the activated brain areas. However, a significant correlation was found between the levels of cognitive performance and the mean intensity of selected activated yokels in the parietal, frontal, and other areas. In conclusion, the method of mean intensity was considered a better index of brain activity rather than the activated yokels measurement method.

Calibration Method of the Tomographic Gamma Scan Techniques Available for Accurately Characterizing 137Cs from 110mAg Interference (110mAg 간섭으로부터 137Cs 정량평가를 위한 드럼핵종분석 교정기술)

  • Jeong, Sung Yeop
    • Journal of Nuclear Fuel Cycle and Waste Technology(JNFCWT)
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    • v.14 no.1
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    • pp.57-61
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    • 2016
  • The Tomographic Gamma Scan (TGS) technique partitions radioactive waste drums into $10{\times}10{\times}16$ voxels and assays both the density and concentration of radioactivity for each voxel thus providing for improved accuracy, when compared to the traditional Non-Destructive Assay(NDA) techniques. It could decrease the degree of precision measurement since there is a trade-off between spatial resolution and precision. This latter drawback is compensated by expanding the Region of Interest (ROI) that differentiates the full energy peaks, which, in turn, results in an optimized degree of precision. The enlarged ROI, however, increases the probability of interference among those nuclides that emit energies in the adjacent spectrum. This study has identified the cause of such interference for the reference nuclide of the TGS technique, $^{137}Cs$ (661.66 keV, half-life 30.5 years), to be $^{110m}Ag$ (657.75 keV, half-life 249.76 days). A new calibration method of determining the optimized ROI was developed, and its effectiveness in accurately characterizing $^{137}Cs$ and eliminating the interference was further ascertained.

Cell-Based Wavelet Compression Method for Volume Data (볼륨 데이터를 위한 셀 기반 웨이브릿 압축 기법)

  • Kim, Tae-Yeong;Sin, Yeong-Gil
    • Journal of KIISE:Computer Systems and Theory
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    • v.26 no.11
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    • pp.1285-1295
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    • 1999
  • 본 논문은 방대한 크기의 볼륨 데이타를 효율적으로 렌더링하기 위한 셀 기반 웨이브릿 압축 방법을 제시한다. 이 방법은 볼륨을 작은 크기의 셀로 나누고, 셀 단위로 웨이브릿 변환을 한 다음 복원 순서에 따른 런-길이(run-length) 인코딩을 수행하여 높은 압축율과 빠른 복원을 제공한다. 또한 최근 복원 정보를 캐쉬 자료 구조에 효율적으로 저장하여 복원 시간을 단축시키고, 에러 임계치의 정규화로 비정규화된 웨이브릿 압축보다 빠른 속도로 정규화된 압축과 같은 고화질의 이미지를 생성하였다. 본 연구의 성능을 평가하기 위하여 {{}} 해상도의 볼륨 데이타를 압축하여 쉬어-? 분해(shear-warp factorization) 알고리즘에 적용한 결과, 손상이 거의 없는 상태로 약 27:1의 압축율이 얻어졌고, 약 3초의 렌더링 시간이 걸렸다.Abstract This paper presents an efficient cell-based wavelet compression method of large volume data. Volume data is divided into individual cell of {{}} voxels, and then wavelet transform is applied to each cell. The transformed cell is run-length encoded according to the reconstruction order resulting in a fairly good compression ratio and fast reconstruction. A cache structure is used to speed up the process of reconstruction and a threshold normalization scheme is presented to produce a higher quality rendered image. We have combined our compression method with shear-warp factorization, which is an accelerated volume rendering algorithm. Experimental results show the space requirement to be about 27:1 and the rendering time to be about 3 seconds for {{}} data sets while preserving the quality of an image as like as using original data.

A Voxelization for Geometrically Defined Objects Using Cutting Surfaces of Cubes (큐브의 단면을 이용한 기하학적인 물체의 복셀화)

  • Gwun, Ou-Bong
    • The KIPS Transactions:PartA
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    • v.10A no.2
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    • pp.157-164
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    • 2003
  • Volume graphics have received a lot of attention as a medical image analysis tool nowadays. In the visualization based on volume graphics, there is a process called voxelization which transforms the geometrically defined objects into the volumetric objects. It enables us to volume render the geometrically defined data with sampling data. This paper suggests a voxeliration method using the cutting surfaces of cubes, implements the method on a PC, and evaluates it with simple geometric modeling data to explore propriety of the method. This method features the ability of calculating the exact normal vector from a voxel, having no hole among voxels, having multi-resolution representation.

Sketch-based Solid Prototype Modeling System with Dual Data Structure of Point-set Surfaces and Voxels

  • Takeuchi, Ryota;Watanabe, Taichi;Yamakawa, Soji
    • International Journal of CAD/CAM
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    • v.11 no.1
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    • pp.18-26
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    • 2011
  • This paper proposes a new solid-shape modeling system based on a lusterware-image illustration. The proposed method reconstructs a three dimensional solid shape from a set of rough sketches that are typically drawn in the early stages of the design process. The sketches do not have to be strictly accurate, and this tolerance to the roughness of the input sketches is one of the major advantages of the proposed method. The proposed system creates an initial shape based on the silhouette of the input lusterware-images. Then the user can edit the initial shape with intuitive cutting and dishing-up operations, which are based on sketching user interface. To achieve the goal, the system retains the geometric model with two representations: a point-set data and a volume data. This dual data structure allows the program to create an initial shape from the input images with little computational cost, and the user can apply cutting and dishing-up operations without substantially increasing computational and memory requirements. In this research, we have tested the proposed system by reconstructing solid models of some mechanical parts from rough sketches. The experimental results indicate that the proposed method is useful for the prototyping of a solid shape.

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Prediction of Ship Resistance Performance Based on the Convolutional Neural Network With Voxelization (합성곱 신경망과 복셀화를 활용한 선박 저항 성능 예측)

  • Jongseo Park;Minjoo Choi;Gisu Song
    • Journal of the Society of Naval Architects of Korea
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    • v.60 no.2
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    • pp.110-119
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    • 2023
  • The prediction of ship resistance performance is typically obtained by Computational Fluid Dynamics (CFD) simulations or model tests in towing tank. However, these methods are both costly and time-consuming, so hull-form designers use statistical methods for a quick feed-back during the early design stage. It is well known that results from statistical methods are often less accurate compared to those from CFD simulations or model tests. To overcome this problem, this study suggests a new approach using a Convolution Neural Network (CNN) with voxelized hull-form data. By converting the original Computer Aided Design (CAD) data into three dimensional voxels, the CNN is able to abstract the hull-form data, focusing only on important features. For the verification, suggested method in this study was compared to a parametric method that uses hull parameters such as length overall and block coefficient as inputs. The results showed that the use of voxelized data significantly improves resistance performance prediction accuracy, compared to the parametric approach.