• Title/Summary/Keyword: Variant

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The N-terminal Region of the Porcine Epidemic Diarrhea Virus Spike Protein is Important for the Receptor Binding (PED 바이러스 Spike 단백질의 세포 수용체 결합 부위 확인)

  • Lee, Dong-Kyu;Cha, Se-Yeoun;Lee, Chang-Hee
    • Microbiology and Biotechnology Letters
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    • v.39 no.2
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    • pp.140-145
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    • 2011
  • Porcine epidemic diarrhea virus (PEDV) infection causes acute enteritis with lethal watery diarrhea resulting in a high mortality rate in piglets. As with the other members of group 1 coronaviruses, PEDV also utilizes the host aminopeptidase N (APN) as the major cellular receptor for entry into target cells. The coronavirus spike (S) protein is known to interact with the cellular surface for viral attachment and the S1 domain of all characterized coronaviruses contains a receptor-binding domain (RBD) that mediates a specific high-affinity interaction with their respective cellular receptors. Although the RBDs of several coronaviruses have been mapped, the location of the PEDV RBD has to date not been defined. As a first step toward the identification of the region of the S protein of the PEDV that is critical for recognition with the cellular receptor, we generated a series of S1-truncated variants and examined their abilities to bind to the porcine APN (pAPN) receptor. Our data indicate that the N-terminus of the S1 domain is required for pAPN association. The results from the present study may assist in our understanding of the molecular interactions between the PEDV S protein and the pAPN receptor.

A Comparative Analysis of Subject Headings Related to Korean Border in the Subject Headings of Major Countries (주요 국가의 주제명표목표에 나타난 한국의 국경관련 주제명 비교 분석)

  • Kim, Jeong-Hyen
    • Journal of Korean Library and Information Science Society
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    • v.44 no.2
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    • pp.217-239
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    • 2013
  • This research was conducted to analyze the actual condition of subject heading related to Korean border shown in the subject headings of 7 countries: United States, France, Germany, Spain, Russia, China, and Japan. The results are as follows. To begin with, Korean border-related records in most other national libraries are in extremely poor conditions except for some countries like United States. Amnokgang and Dumangang-related records did not search at all in the France. Yellow Sea, Dumangang, and Baekdusan-related records did not search at all in the Spain. Second, even Dokdo we have effective control, the geographical name 'Korea' is not marked with catalog records except the United States and France. The Germany is displayed with the geographical name of 'Korea' and 'Japan'. Third, the East Sea(Donghae) already is marked with 'Sea of Japan' in most of the national library catalogs, and Yellow Sea(Huanghai) is marked with 'Yellow Sea'. Fourth, Amnokgang and Dumangang is marked with Chinese pronunciation in most in most of the national library. Fifth, Baekdusan is marked with Korean pronunciation in most countries. However the United States showed in 'Baekdu Mountain' and 'Changbai Mountain' discrimination. In the case of the Germany, 'Changbai Mountain' are marked with variant access point of 'Baekdusan'.

A Heuristic Algorithm for the Two-Dimensional Bin Packing Problem Using a Fitness Function (적합성 함수를 이용한 2차원 저장소 적재 문제의 휴리스틱 알고리즘)

  • Yon, Yong-Ho;Lee, Sun-Young;Lee, Jong-Yun
    • The KIPS Transactions:PartB
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    • v.16B no.5
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    • pp.403-410
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    • 2009
  • The two-dimensional bin packing problem(2D-BPP) has been known to be NP-hard, and it is difficult to solve the problem exactly. Many approximation methods, such as genetic algorithm, simulated annealing and tabu search etc, have been also proposed to gain better solutions. However, the existing approximation algorithms, such as branch-and-bound and tabu search, have shown the low efficiency and the long execution time due to a large of iterations. To solve these problems, we first define the fitness function to simplify and increase the utility of algorithm. The function decides whether an item is packed into a given area, and as an important information for a packing strategy, the number of subarea that can accommodate a given item is obtained from the variant of the fitness function. Then we present a heuristic algorithm BF for 2D bin packing, constructed by the fitness function and subarea. Finally, the effectiveness of the proposed algorithm will be expressed by the comparison experiments with the heuristic and the metaheuristic of the literatures. As comparing with existing heuristic algorithms and metaheuristic algorithms, it has been found that the packing rate of algorithm BP is the same as 97% as existing heuristic algorithms, FFF and FBS, or better than them. Also, it has been shown the same as 86% as tabu search algorithm or better.

Changes in Fruit Quality of Hallabong Tangor (Citrus kiyomi ${\times}$ ponkan) by Film Packaging during Storage (포장재 처리에 따른 한라봉 감귤의 저장 중 품질변화)

  • Lee, Sang-Hyup;Kim, Jong-Hyun;Jeong, Hee-Chan;Koh, Jeong-Sam
    • Food Science and Preservation
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    • v.15 no.2
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    • pp.185-190
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    • 2008
  • We investigated changes in fruit quality of Hallabong tangor (Citrus Kiyomi ${\times}$ ponkan) that was packaged with Si+CaO and LDPE film. The flesh ratio during storage was 74.33% (${\pm}3.66$) to 81.56% (${\pm}1.38$). Firmness of M16A, a variant of Hallabong tangor, was higher 100g-force than that of Hallabong tangor, changes of firmness was not shown among film packages. A fruit juice was $12-14^{\circ}$Brix, and this increased somewhat at the end of storage without film packaging. The titratable acidity of the M16A variety was 0.2% lower than that of the Hallabong tangor. Hallabong and M16A maintained freshness and taste for 120 and 60 days, respectively. The level of reducing sugars in the Hallabong tangor was 1% higher than that of the M16A variety. Reducing sugars increased at room temperature storage without film packaging. Total sugar content was 9.19% (${\pm}2.03$) to 12.78% (${\pm}0.75$). The content of vitamin C declined slowly after 105 days of storage. In conclusion, storage of Hallabong tangor with film packaging coated with Si+CaO was effective for maintaining freshness and quality.

Comparison of transition temperature range and phase transformation behavior of nickel-titanium wires (니켈-타이타늄 호선의 상전이 온도 범위와 상전이 행동 비교)

  • Lee, Yu-Hyun;Lim, Bum-Soon;Lee, Yong-Keun;Kim, Cheol-We;Baek, Seung-Hak
    • The korean journal of orthodontics
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    • v.40 no.1
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    • pp.40-49
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    • 2010
  • Objective: The aim of this research was to evaluate the mechanical properties (MP) and degree of the phase transformation (PT) of martensitic (M-NiTi), austenitic (A-NiTi) and thermodynamic nickel-titanium wire (T-NiTi). Methods: The samples consisted of $0.016\;{\times}\;0.022$ inch M-NiTi (Nitinol Classic, NC), A-NiTi (Optimalloy, OPTI) and T-NiTi (Neo-Sentalloy, NEO). Differential scanning calorimetry (DSC), three-point bending test, X-ray diffraction (XRD), and microstructure examination were used. Statistical evaluation was undertaken using ANOVA test. Results: In DSC analysis, OPTI and NEO showed two peaks in the heating curves and one peak in the cooling curves. However, NC revealed one single broad and weak peak in the heating and cooling curves. Austenite finishing ($A_f$) temperatures were $19.7^{\circ}C$ for OPTI, $24.6^{\circ}C$ for NEO and $52.4^{\circ}C$ for NC. In the three-point bending test, residual deflection was observed for NC, OPTI and NEO. The load ranges of NC and OPTI were broader and higher than NEO. XRD and microstructure analyses showed that OPTI and NEO had a mixture of martensite and austenite at temperatures below Martensite finishing ($M_f$). NEO and OPTI showed improved MP and PT behavior than NC. Conclusions: The mechanical and thermal behaviors of NiTi wire cannot be completely explained by the expected degree of PT because of complicated martensite variants and independent PT induced by heat and stress.

A Determination Model of the Data Transmission-Interval for Collecting Vehicular Information at WAVE-technology driven Highway by Simulation Method (모의실험을 이용한 WAVE기반 고속도로 차량정보 전송간격 결정 모델 연구)

  • Jang, Jeong-Ah;Cho, Han-Byeog;Kim, Hyon-Suk
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.9 no.4
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    • pp.1-12
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    • 2010
  • This paper deals with the transmission interval of vehicle data in smart highway where WAVE (Wireless Access for Vehicular Environments) systems have been installed for advanced road infrastructure. The vehicle data could be collected at every second, which is containing location information of the vehicle as well the vehicle speed, RPM, fuel consuming and safety data. The safety data such as DTC code, can be collected through OBD-II. These vehicle data can be used for valuable contents for processing and providing traffic information. In this paper, we propose a model to decide the collection interval of vehicle information in real time environment. This model can change the transmission interval along with special and time-variant traffic condition based on the 32 scenarios using microscopic traffic simulator, VISSIM. We have reviewed the transmission interval, communication transmission quantity and communication interval, tried to confirm about communication possibility and BPS, etc for each scenario. As results, in 2-lane from 1km highway segment, most appropriate transmission interval is 2 times over spatial basic segment considering to communication specification. In the future, if a variety of wireless technologies on the road is introduced, this paper considering not only traffic condition but also wireless network specification will be utilized the high value.

Association between the Interleukin-17A -197G>A (rs2275913) Polymorphism and Risk of Digestive Cancer

  • Duan, Yin;Shi, Ji-Nan;Pan, Chi;Chen, Hai-Long;Zhang, Su-Zhan
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.21
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    • pp.9295-9300
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    • 2014
  • Interleukin-17A (IL-17A) is a multifunctional cytokine which plays a crucial role in the initiation and progression of cancer. To date, several studies have investigated associations between IL-17A -197G>A (rs2275913) polymorphism and digestive cancer risk, but the results remain conflicting. We here aimed to confirm the role of this single nucleotide polymorphism (SNP) in susceptibility to digestive cancer through a systemic review and meta-analysis. Ten eligible case-control studies were identified by searching electronic databases, involving 3,087 cases and 3,815 controls. Odds ratios (ORs) and corresponding 95% confidence intervals (CIs) were used to estimate the strength of the association. The results of overall analyses indicated that the variant A allele was associated with an increased risk of digestive cancer (AA vs GG: OR=1.51, 95%CI=1.18-1.93; AA vs GG+GA: OR=1.45, 95%CI=1.12-1.87; A vs G: OR=1.21, 95%CI=1.05-1.39). In subgroup analysis stratified by specific cancer type, elevated risk among studies of gastric cancer was found (AA vs GG: OR=1.68, 95%CI=1.24-2.28; AA vs GG+GA: OR=1.62, 95%CI=1.16-2.26; A vs G: OR=1.23, 95%CI=1.04-1.46). According to ethnicity, there was evidence in the Asian populations for an association between this polymorphism and cancer risk (GA vs GG: OR=1.19, 95%CI=1.05-1.36; AA vs GG: OR=1.56, 95%CI=1.15-2.12; AA+GA vs GG: OR=1.28, 95%CI=1.13-1.44; AA vs GG+GA: OR=1.42, 95%CI=1.01-2.00; A vs G: OR=1.24, 95%CI=1.08-1.44), while in the Caucasian populations an association was found in the recessive model (AA vs GG+GA: OR=1.62, 95%CI=1.17-2.24). In conclusion, the results of this meta-analysis suggest that the IL-17A -197G>A polymorphism contributes to an increased risk of human digestive cancer, both in the Asian and Caucasian populations and especially for gastric cancer.

Validity and Reliability of the Assessment Tool for Measuring Communication Skills of Dental Hygienist (치과위생사의 커뮤니케이션 기술 측정을 위한 평가 도구의 타당도와 신뢰도)

  • Moon, Hak-Jin;Lee, Soo-Young;Lim, Soon-Ryun
    • Journal of dental hygiene science
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    • v.14 no.2
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    • pp.198-206
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    • 2014
  • The purpose of this study was to develop and validate tool for measuring the communication skills of dental hygienist. The survey was modified and revised to fit into Korean culture. Also the reliability and validity was tested in order to ensure the survey was properly evaluating communication skills of dental hygienists. A survey was conducted with outpatients in dental clinics located in Seoul, Gyeonggi, and Daejeon area. The 483 answers out of the total collected answers were used for the final analysis of the study, using PASW Statistics 18.0 and IBM SPSS AMOS 7.0 to measure the validity and reliability. The factor analysis showed that the communication skill of the dental hygienists was composed of three elements, namely 'being caring and respectful' communications, 'sharing information' communications and 'tending to comfort' communications to reduce pain and anxiety. The validity of the model examined by a confirmatory factor analysis satisfied most of the relevant requirements. All of the factors had the conceptual reliability and variant extracted index above the minimum requirements, ensuring reliability and concentrated validity. Also, the value of the square of the correlations between all latent factors which was larger than the square of the correlation between all of the factors, thus proving the discriment validity. Cronbach's ${\alpha}$ was 0.8, which shows high reliability level. In conclusion, it was proven that dental hygienist's communication skill measurement tool has high validity and reliability. Further, this study can be used to improve dental hygienists' communication skills. Therefore, this will improve oral health of clients and manage them.

Song Themes and Variation of Yellow-throated Bunting (Emberiza elegans) (노랑턱멧새(Emberiza elegans)의 테마송과 변이)

  • Lee, Won-Ho;Kwon, Ki-Chung
    • Journal of Ecology and Environment
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    • v.29 no.3
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    • pp.219-225
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    • 2006
  • To study song themes and variation of Yellow-throated Bunting, we obtained and analyzed recordings from 45 males breeding in 16 deciduous forests of 6 provinces. We classified the 3,245 songs into a total of 164 song themes and 1,024 song variants according to the identification on the base of difference(lexicon) in 640 syllable compositions. Males had one to six song themes and averaged 3.5 themes. No males shared an identical song theme. Males had $5{\sim}14$ syllables (ave. 9.4) in one song theme and males increased effectively their repertoire size by changing syllable composition (i.e. adding, deleting, or substituting one or more syllables) in a single song theme. The number of variants averaged 5.1 (range 1 to 31) per song theme. Individual variability was highest in the terminal elements of the song. In PCA, the 16 populations are clearly separated on Co. I based on shared syllable and on Co. II based on unique syllable. Similarity of songs based on shared syllables by distance coefficients, showed a pattern of concordance with geography. Pairwise similarity declined with increasing distance among recording sites. 16 different geographical regions by the syllable were divided in UPGMA tree.

Prediction of Water-Quality Enhancement Effects of Gates Operation in the West-Nakdong River Using RMA2/RMA4 Models (RMA2/RMA4 모형을 이용한 서낙동간 수문연계운영의 수질개선 효과 예측)

  • Lee, Keum-Chan;Yoon, Young-Sam;Lee, Nam-Joo
    • Journal of Environmental Science International
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    • v.18 no.9
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    • pp.971-981
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    • 2009
  • An objective of this study is as follows: 1) performing sensitivity analysis and parameter estimation of RMA2 and RMA4 models for the West-Nakdong River, 2) drawing up alternatives of gates-operation for water-quality enhancement, and 3) quantitative evaluation of methodology of 'flow-restoration by gates-operation' among 'Comprehensive Plan Improving Water-Quality in the West-Nakdong River(WNR)' with the target water-quality(BOD at Nakbon-N point: below 4.3 mg/L). The parameters for the RMA2 (depth-averaged two-dimensional flow model) and RMA4 (depth-averaged two-dimensional water-quality model) were determined by sensitivity analysis. Result of parameter estimation for RMA2 and RMA4 models is $1,000\;Pa{\cdot}s$ of the eddy viscosity, 20 of the Peclet number, 0.025 of the Manning coefficient, and $1.0\;m^2/s$ of the diffusion coefficient. We have evaluated the effects of water-quality enhancement of the selected alternatives by numerical simulation technique with the models under the steady-state flow condition and the time-variant transport condition. Because of no-resuspension from river bottom and considering BOD as conservative matter, these simulation results slightly differ from real phenomena. In the case of $50\;m^3/s$ of Daejeo-gate inflow, two-dimensional flow pn results result represents that small velocity occurs in the Pyungkang Stream and no flow in the Maekdo River. In the WNR, there occurs the most rapid flow near timhae-bridge. In the WNR, changes of water-quality for the four selected simulation cases(6, 10, 30, $50\;m^3/s$ of the Daejeo-gate inflow) were predicted. Since the Daejeo-Gate and the Noksan-Gate can be opened up to 7 days, it would be found that sustainable inflow of $30\;m^3/s$ at the Daejeo-gate makes BOD in the WNR to be under the target of water-quality.