• ALGAE
• /
• 제35권3호
• /
• pp.293-301
• /
• 2020

The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

• 한국어류학회지
• /
• 제27권3호
• /
• pp.165-182
• /
• 2015

쏨뱅이아목 (Scorpaenoidei) 어류에 속하는 꼼치과 (Liparidae) 어류는 형태적으로 유사하고 오동정 가능성이 크며 체색과 몸의 상대적인 크기 변이가 심하여 분류학적으로도 상당히 혼란스러운 분류군이다. 따라서, 본 연구는 꼼치과 어류의 자원변동을 이해하고 자원관리를 위해 국내 보고된 3속 10종을 대상으로 분자계통 및 분류학적 재검토를 수행하였다. 미토콘드리아DNA COI 영역과 핵DNA RAG2 영역의 염기서열을 이용한 분자계통 분석 결과, 물미거지가 분홍꼼치와 가깝게 유집되는 mtCOI 계통 결과를 제외하면 3속 (분홍꼼치속, 물미거지속, 꼼치속)이 대등한 단계통성을 나타내었다. Gilbert and Burke (1912)는 L. ochotensis와 구분되는 한국산 미거지를 L. ingens로 신종 보고하였으나, 본 연구에서 한국산 미거지는 일본산 및 러시아산 L. ochotensis와 형태 및 분자에서 잘 일치하였으므로 한국산 미거지의 학명을 L. ingens에서 L. ochotensis로 변경한다.

• 대한본초학회지
• /
• 제34권6호
• /
• pp.63-70
• /
• 2019

Objective : Arnebiae Radix, the roots of Arnebia euchroma (Royle) Johnst. or A. guttata Bunge, is a well-known traditional herbal medicine in East Asia. In the Korean Pharmacopoeia, three authentic species, including two Arnebia and Lithospermum erythrorhizon Sieb. et Zucc. have recognized as a Lithospermi Radix. But, the morphological and taxonomic information of two authentic Arnebia species lacks date since their distribution and difficulty of accessing the natural habitats. Methods : A full description of the external morphological characteristics of vegetative and reproductive organs in the original plants was carried out using digital calipers and stereoscope. For providing their taxonomic and nomenclatural synonyms, we reviewed various plant checklists and taxonomic literature. Results : This study provides taxonomic information of A. euchroma and A. guttata based on a morphological examination of authentic plant individuals and field observations. Detailed descriptions of the two Arnebia species, major quantitative and qualitative characteristics, nomenclatural reviews, distribution maps, and lists of voucher specimens examined are provided. The shape of leaves, root length, stem number, calyx length and pubescence as well as corolla color were useful characteristics for identification. Moreover, we confirmed that A. euchroma and A. guttata are clearly heterostylous species. Conclusion : Our research provides valuable basic information that could be used as quality control for distinguishing between Arnebiae Radix and its adulterants. These results will help in the understanding of authentic plants and also provide the verified materials and voucher information.

• 환경영향평가
• /
• 제22권5호
• /
• pp.491-511
• /
• 2013

In this study, three survey areas in Changnyeong, Miryang and Jinju of the confirmed the habitation of nutria and carried out the performance on the plant diet resource. From the habitat trace survey in the nutria habitat, a total of 336 trace points was shown. There were 181 trace points (54%) confirmed from St. 1 as the highest showing, followed by 52 trace points (15.4%) from St. 2, and 103 trace points (30.6)% from St. 3. The vascular plants distributed in the habitat area were a total of 182 taxonomic group with 57 families, 99 genus, 16 hybrids, and 1 race. The vascular plant living types in the habitat area are 1-year plant (Th, Th(w)) for 63class groups (34.6%), hemicryptophyte (H) for 42class groups(23.1%). plants, trees, crop plants were included. As a result of analyzing the overseas research cases on the diet plants of nutria, there are 195 taxonomic groups in a total of 39 families, 126 genus, 183 breeds, and 12 hybrids. In the study areas, feeding the plants was confirmed by the 7 taxonomic groups, aquatic plant, terrestrial From the total of 182 taxonomic groups discovered in the habitat area, 20 class groups, in 3 habitation region, 10 class groups of commonly appearing 49 class groups were shown to be the breed confirmed for diet in existing case studies, and assuming from it basis, the nutria habitating in the survey area is considered to have the supply of diverse diet resource to have flawless habitation. This is implication of having potential breeding possibility.

• 환경생물
• /
• 제23권2호
• /
• pp.200-205
• /
• 2005

This study carried out to certify of taxonomic delimitation in A. artemisiaefolia, A. trifida, A. trifida for. integrifolia, and A. psilostachya in the area of literature and experiment. A. psilostachya was not a vestige of naturalized in Korea and A. trifida and A. trifida for. integrifolia didn't have any valuable differences of morphological and molecular biological experiment. I arranged that naturalized species in Ambrosia are A. artemisiaefolia L. and A. trifida L. in Korea.

• Ocean and Polar Research
• /
• 제23권4호
• /
• pp.347-360
• /
• 2001

This study examined the taxonomic composition of marine benthic algal flora from Maxwell Bay, King George Island, Antarctica, collected between January 1988 and January 1995. The rhodophyte specimens collected and examined included a total of 20 genera and 20 species of red algae. Of these, 2 species, Kallymenia antarctica Hariot and Pantoneura plocamioides Kylin, were recorded in Maxwell Bay for the first time. Taxonomic keys for the rhodophytes are also provided.

• Animal cells and systems
• /
• 제11권2호
• /
• pp.255-263
• /
• 2007

A taxonomic study on the genus Tropocyclops has been accomplished as a part of the series of studies on the freshwater cyclopoid copepods in South Korea. As a result, the Tropocyclops prasinus, hitherto known from Korea in many reports and papers, turns out to be a species complex of three sibling species: T. prasinus (Fischer, 1860), T. ishidai n. sp., and T. setulifer n. sp. This paper deals with description of two of these new species with taxonomic accounts on their inter- or intraspecific morphological discrepancies.

• 환경생물
• /
• 제17권3호
• /
• pp.365-369
• /
• 1999

베트남산 Podontia affinis, P. dalmani, P. lutea의 3종 유충에 대한 상세한 기재를 하였으며, P. dalmani를 제외한 Podontia affinis 및 P. lutea는 최초로 기재된다. 또한 이 종들의 분류학적 특징에 대해서도 언급한다.

• Animal Systematics, Evolution and Diversity
• /
• 제24권1호
• /
• pp.115-127
• /
• 2008

A taxonomic study on the genus Nitakra (Ameiridae) is accomplished. A total of five species are collected from coastal marshes, lagoons, and estuaries in South Korea. Among them, the latter three species are newly recorded from Korea: N. spinipes Boeck, N. affinis califarnica Lang and N. pietschmanni (Chappuis). Taxonomic accounts and a key to the species from Korea are given.

• Journal of Plant Biology
• /
• 제31권1호
• /
• pp.51-68
• /
• 1988

To clarity the species of genus Melandrium (Caryophyllaceae) in Korea, the taxonomic characters were described and interspecific relationships were discussed to the extemal morphology with light and scanning electron microscopy. The position and size of appendages on petal, the shape and venation pattern of leaf, and the external morphology of seed and pollen were approved as the good characters to classify genus Melandrium in Korea. As the result, genus Melandrium in Korea could be arranged as 6 species, 1 variety, 1 forma. M. umbellatum was exclusively distributed in north Korea, and its taxonomic treatment was reserved.