• Korean Journal of Environmental Biology
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• v.20 no.4
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• pp.347-354
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• 2002

Near the Gapcheon, a new suburban city will be developed by the Ministry of Construction and Transportation, and a intracity highway will be constructed by Daejeon Metropolitan City. By these new plans, rapid disruption of environmental conditions near the Gapcheon will be anticipated. The new construction of the city and highway will raise a problem of environmental pollution and disruption of natural status of this area, and will have an adverse influence to environment of the Dunsan area and an industrial complex which are located at the downstream of the Gapcheon. This re-search was conducted on the Gapcheon area, Daejeon (Gasuwongyo to Wonchongyo) from August, 2001 to June, 2002 years. Microorganisms of Gapcheon are three forms, 17 varieties, 105 species, 58 geneva, 31 families, and totalled 125 taxa. And zooidal micro-organisms, one varieties, 16 species, 12 genera, eight families, and totalled 17 taxa. Hydrogen ion concentration of the stream is ranged from 7.10 to 9.98 with great variation, especially high below bridges of Gasuwongyo and Mannyeongyo. The clean water quality of the stream is still maintained very well due to dense distribution of diverse aqua-tic and swamp plants. Furthermore, species diversity of microorganisms in the stream does help to purify the quality of water, and to keep the health of the Gapcheon as natural. More environmentally controlled and continuous efforts to keep the Gapcheon in a natural status and to purify the quality of water should be made by Daejeon Metropolitan City Officials who ave now spending about 6G,5()0 million won for overall conservation plans of the stream (from 1999 to 2003 years).

• Journal of Life Science
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• v.17 no.4 s.84
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• pp.470-475
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• 2007

Genus Sorbus is a long lived woody species. Plants of this genus are primarily distributed patchy throughout Asia and Europe. Sorbus commixta is primarily distributed throughout Europe. Eastern Asian Sorbus species are regarded as very important herbal medicines in Korea and China. Random amplified polymorphic DNA (RAPD) was used to investigate the genetic variation and phylogenetic analysis of four species of this genus in Korea. Although some Korean populations of these species were isolated and patchily distributed, they exhibited a high level of genetic diversity. Twenty-six primers revealed 205 loci, of which 128 were polymorphic (62.4%). S. commixta showed the highest diversity (0.165), whereas S. aucuparia showed the lowest diversity (0.109). The estimated gene flow (Nm) was low high among intra-species (mean Nm=0.755). A similarity matrix based on the proportion of shared fragments (GS) was used to evaluate relatedness among species. The estimate of GS ranged from 0.786 to 0.963. The molecular data allowed us to resolve well-supported clades in Korean taxa and European species. An addition, especially, species-specific markers for genus Sorbus by RAPD analysis may be useful in germ-plasm classification and agricultural process of several taxa of this genus.

• Journal of Environmental Impact Assessment
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• v.31 no.6
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• pp.409-422
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• 2022

Riverine wetlands are an important element of the river ecosystem and account for approximately 38% of the inland wetlands surveyed so far. The Shincheon Wetland located in Mangyeong River is also a channel wetland as the flow rate is slowed by the constructed weirs, leading to sediment accumulation. To identify the conservation value and ecological characteristics of Shincheon Wetland, its vegetation and plant diversity were identified using a phytosociological method, and a total of 45 vegetation-related datasets were collected. Overall, 24 plant communities, comprising a total of 153 taxa (49 families, 117 genera, 146 species, 2 subspecies, 5 varieties) were identified. The plant with the highest appearance rate in the communities was Humulus japonicus Siebold & Zucc. In addition, annual herb species, including Rumex crispus L., Bromusjaponicus Thunb., Erigeron annuus (L.) Pers., and Artemisia indica Willd. were frequently observed to be growing in the secondary grassland. Naturalized plants were surveyed in the 38 taxa; the urbanization index was 10.3% and the naturalized index was 24.8%. Plant communities were largely classified into submerged vegetation, floating and floating-leaved vegetation, annual and biennial vegetation, perennial herb vegetation, and woody vegetation. The distribution of plant communities reflecting various habitats, including the lentic and lotic zone maintaining a constant water depth, littoral zone experiencing intermittent water level fluctuations, and dry floodplain environment was also confirmed. Overall, plant community development plays an important role in the habitat for wild animals; therefore, it is expected to positively impact biodiversity enhancement.

• Korean Journal of Environment and Ecology
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• v.30 no.2
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• pp.199-213
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• 2016

This study aimed to analyze the vegetation characteristics of the coastal forests and to figure out if there is possibilities to develop the forests into mixed stand multistory forests and to suggest some sound management practices. The vegetat- ion structure and flora of four sites; Kijipo, Chunjangdae, Janghang and Kusipo in the west coastal forests in Korea were investigated and analyzed in the present study. In the every site, Pinus thunbergii was dominating the tree layer in the forests. And P. densiflora, Robinia pseudoacacia, Quercus serrata, Prunus sargentii var. sargentii, Q. acutissima and Castanea crenata were dominating the subtree layers in some sites. P. thunbergii stands in four sites would maintain for a while since the populat- ion density of middle aged group is higher than those of young and old groups. According to the geographical location conditions, there is a possibility that the coastal forests in Kusipo site would progress into oak tree stands in the long run. The biodiversity was quite high to have 205 taxa in the study sites. To induce the coastal forests into multistory forests, P. thunbergii stands need to be thinned. And then creating the environment including making some pathways and site usage rest-riction is needed to let new diverse plants could come in and grow for a success-ful multistory forests.

• Korean Journal of Environment and Ecology
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• v.16 no.3
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• pp.271-286
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• 2002

To understand the status of vegetational composition of Jungnangcheon, 21 plots in 7 sites were investigated in June 2001 and flora survey was done during the period from June to September 2001. The results obtained from this study were as follows: Vegetational compositions of 7 sites in Jungnangcheon area were different site by site and plot by plot. In lower(nearest) point, Phalaris arundinacea, Potentilla supina, Rorippa islandica, Chenopodium album, Beckmannia syzigachne and Chenopodium ficifolium showed higher constancy and frequency. Bromus japonicus, Humulus japonicus, Conyza canadensis, Elymus tsukusiensis var. transiens showed higher constancy and frequency in middle point and Bromus japonicus, Chenopodium ficifolium, Artemisia princeps var. orientalis showed in upper point. Bromus japonicus, Chenopodium ficifolium, Humulus japonicus, Conyza canadensis, Elymus tsukusiensis var. transiens, Artemisia princeps var. orientalis and Lepidium uirginicum appeared at more than 9 polts in 21 sample plots. Number of naturalized plants in Jungnangcheon area were 79 taxa. Total naturalized index(NI) and urbanized index(UI) were recorded as 29.2%, 27.9%. 253 taxa including 50 families 169 genera 224 species 1 subspecies 27 varieties 1 forma were recorded in Jungnangcheon area. Therophyte(Th) was the most common dormancy form recorded in survey area. Geophyte(G) and Hemicryptophyte(H) were calculated as 7.1%, 17.8% and it was the lower value compared to those of other dormancy form. Consequently, Th-R$_{5}$-D$_4$-e was recorded as the most common life form in Jungnangcheon.

• Journal of Microbiology and Biotechnology
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• v.23 no.10
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• pp.1347-1356
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• 2013

Tricholoma matsutake, an ectomycorrhiza that has mutual relationships with the rootlet of Pinus denisflora, forms a fruiting body that serves as a valuable food in Asia. However, the artificial culture of this fungus has not been successful. Soil fungi, including T. matsutake, coexist with many other microorganisms and plants; therefore, complex microbial communities have an influence on the fruiting body formation of T. matsutake. Here, we report on the structures of fungal communities associated with the fairy ring of T. matsutake through the pyrosequencing method. Soil samples were collected inside the fairy ring zone, in the fairy ring zone, and outside the fairy ring zone. A total of 37,125 sequencing reads were obtained and 728 to 1,962 operational taxonomic units (OTUs) were observed in the sampling zones. The fairy ring zone had the lowest OTUs and the lowest fungal diversity of all sampling zones. The number of OTUs and fungal taxa inside and outside the fairy ring zone was, respectively, about 2 times and 1.5 times higher than the fairy ring. Taxonomic analysis showed that each sampling zone has different fungal communities. In particular, out of 209 genera total, 6 genera in the fairy ring zone, such as Hemimycena, were uniquely present and 31 genera, such as Mycena, Boletopsis, and Repetophragma, were specifically absent. The results of metagenomic analysis based on the pyrosequencing indicate a decrease of fungal communities in the fairy ring zone and changes of fungal communities depending on the fairy ring growth of T. matsutake.

• The Korea Journal of Herbology
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• v.28 no.5
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• pp.29-31
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• 2013

Objectives : 'Reconsideration about Nomenclature of Herbs Listed in the Korean Pharmacopoeia' was published by Doh and Lee with absolute misconception of nomenclature. A critical review of Doh and Lee's paper is given, to correct the confused the concept of nomenclature and to provide proper scientific name for taxa which are discussed. Methods : This paper discusses the proper usage, as mandated by the International Code of Nomenclature. Adherence to the rules described in this paper should reduce the present confusion in the nomenclature of scientific names listed in the Korean Pharmacopoeia. Results : Although Doh and Lee proposed four categories to correct the scientific names of the Korean Pharmacopoeia using available botanical databases, they failed to show how nomenclatural concepts are applicable due to misconception of legitimacy and the confusion about synonym. From a nomenclatural perspective, 'accepted name' or 'recommended name' is a subjective term which used to be employed for convenience in a certain databases or working group without nomenclatural meaning. Doh and Lee also pointed out the standardization of author citation. However, they missed the importance of author citation error such as basionym or validating authors. Conclusions : Doh and Lee were not able to solve nomenclatural problems of the Korea Pharmacopoeia due to lack of clarity on the nomenclature code. We strongly recommend that KFDA has to commence extensive nomenclatural review for the next revision of Korea Pharmacopoeia.

• Mycobiology
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• v.48 no.3
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• pp.169-183
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• 2020

Nigrospora is a monophyletic genus belonging to Apiosporaceae. Species in this genus are phytopathogenic, endophytic, and saprobic on different hosts. In this study, leaf specimens with disease symptoms were collected from host plants from the Shandong Peninsula, China. The fungal taxa associated with these leaf spots were studied using morphology and phylogeny based on ITS, TEF1, and TUB2 gene regions. In this article, we report on the genus Nigrospora with N. gorlenkoana, N. oryzae, N. osmanthi, N. rubi, and N. sphaerica identified with 13 novel host associations including crops with economic importance such as bamboo and Chinese rose.

• Journal of Plant Biotechnology
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• v.47 no.1
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• pp.15-25
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• 2020

Allium L. is one of the largest genera of the Amaryllidaceae family, with more than 920 species including many economically important species used as vegetables, spices, medicines, or ornamental plants. Currently, DNA barcoding tools are being successfully used for the molecular taxonomy of Allium. A total of 46 Allium species were collected from their native areas, and DNA was extracted using the IBRC DNA extraction kit. We used specific primers to PCR amplify matK. DNA sequences were edited and aligned for homology, and a phylogenetic tree was constructed using the neighbor-joining method. The results show thymine (38.5%) was the most frequent and guanine (13.9%) the least frequent nucleotide. The matK regions of the populations were quite highly conserved, and the amount of C and CT was calculated at 0.162 and 0.26, respectively. Analysis of the nucleotide substitution showed C-T (26.22%) and A-G (8.08%) to have the highest and lowest percent, respectively. The natural selection process dN/dS was 1.16, and the naturality test results were -1.5 for Tajima's D and -1.19 for Fu's Fs. The NJ dendrogram generated three distinct clades: the first contained Allium austroiranicum and A. ampeloprasum; the second contained A. iranshahrii, A. bisotunense, and A. cf assadi; and the third contained A. rubellum and other species. In this study, we tested the utility of the matK region as a DNA barcode for discriminating Allium. species.

• Korean Journal of Plant Resources
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• v.26 no.2
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• pp.214-226
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• 2013

The habitats characteristics of Pedicularis ishidoyana were investigated to provide basic data for conservation and restoration. The altitude ranged from 107m to 494m, with inclinations of $5{\sim}20^{\circ}$. As a result of vegetation survey within natural populations, a total of 243 taxa were identified 18 quadrates in 6 natural habitats. The importance value of Pedicularis ishidoyana is 13.2% based on the coverage and frequency of the herb layer with in the populations. NMS analysis, environmental impact of Pedicularis ishidoyana a decisive impact on the habitat factors, the species composition of the woody layer, rather than the species composition of the herb layer can say is more dominant. Preservation of habitat conditions is important for stable maintenance the flora, and the surrounding area including habitats has to be desegnated a protection area for habitats preservation.