• KSBB Journal
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• v.14 no.5
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• pp.561-565
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• 1999

Optimum conditions for vacuum-drying ad cultivation of yeast cells for the production of active dry yeast were examined. At lower temperature, more drying time was required to dry the yeast pellet to reach the desirable water content(8%). Optimum temperature of vaccum oven and time for drying was 63$^{\circ}C$ and 90 min, respectively. Optimum medium composition for flask culture using cane molasses as the substrate were 0.25% sugar, 0.013% $K_2$HPO$_4$, 0.1% $K_2$HPO$_4$. and 0.125% (NH$_4$)$_2$SO$_4$. Culture temperature $25^{\circ}C$ gave the highest survival rate of dired yeast. After finishing fed-batch culture and the culture was left in the fermentor without adding any sugar or nutrient, survival of the dried yeast harvested from the fermentor increased to 86.0% after 36 hr. It was also observed that the yeast cells with higher budding rates showed lower survival rate.

• Journal of Microbiology and Biotechnology
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• v.21 no.6
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• pp.617-626
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• 2011

Transglutaminase from Streptomyces mobaraensis is an enzyme of unknown function that cross-links proteins to high molecular weight aggregates. Previously, we characterized two intrinsic transglutaminase substrates with inactivating activities against subtilisin and dispase. This report now describes a novel substrate that inhibits papain, bromelain, and trypsin. Papain was the most sensitive protease; thus, the protein was designated Streptomyces papain inhibitor (SPI). To avoid transglutaminase-mediated glutamine deamidation during culture, SPI was produced by Streptomyces mobaraensis at various growth temperatures. The best results were achieved by culturing for 30-50 h at $42^{\circ}C$, which yielded high SPI concentrations and negligibly small amounts of mature transglutaminase. Transglutaminasespecific biotinylation displayed largely unmodified glutamine and lysine residues. In contrast, purified SPI from the $28^{\circ}C$ culture lost the potential to be cross-linked, but exhibited higher inhibitory activity as indicated by a significantly lower $K_i$ (60 nM vs. 140 nM). Despite similarities in molecular mass (12 kDa) and high thermostability, SPI exhibits clear differences in comparison with all members of the wellknown family of Streptomyces subtilisin inhibitors. The neutral protein (pI of 7.3) shares sequence homology with a putative protein from Streptomyces lavendulae, whose conformation is most likely stabilized by two disulfide bridges. However, cysteine residues are not localized in the typical regions of subtilisin inhibitors. SPI and the formerly characterized dispase-inactivating substrate are unique proteins of distinct Streptomycetes such as Streptomyces mobaraensis. Along with the subtilisin inhibitory protein, they could play a crucial role in the defense of vulnerable protein layers that are solidified by transglutaminase.

• Journal of Bio-Environment Control
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• v.8 no.2
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• pp.90-98
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• 1999

This study was conducted to select proper substrate and nutrient solution concentration for favorable growth and quality in common thyme (Thymus vulgaris L.). The growth of common thyme was better in deep flow culture (DFT) than in other substrate cultures. As the nutrient solution concentration rose, the ratio of dry matter increased, while the fresh weight and the number of lateral shoots decreased. The contents of total chlorophyll and vitamin C were higher in DFT than others. Ca, K, P were showed high contents in cocopeat, but Mg content was the highest at half-fold concentration in DFT. Common thyme showed low content of nitrate in DFT compared with that in other substrate culture. DFT was the most effective system for pronoting growth and quality of common thyme. The optimal concentration of nutrient solution in common thyme was half-fold(EC=1.2mS/cm) of herbs nutrient solution by European Vegetable R&D Center.

• Korean Journal of Medicinal Crop Science
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• v.19 no.6
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• pp.441-445
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• 2011

This research was conducted to investigate the influence of variouis organic substrates on growth and yield of organically grown ginseng seedlings in a shaded plastic house. In the investigation of optimal substrate, the eight substrate were formulated by adjusting blending rate of peatmoss, perlite, coir dust(coco peat), and vermiculite. Then, the changes in physico chemical properties of root substrates as well as their influences on the growth characteristics and yield were determined at six months after sowing. The elevation of the blending rate of peatmoss from 50% to 70% with decrease in the rate of inorganic component (mixture of perlite and vermiculite) from 50 to 30% resulted in the increase in container capacities and decrease in total porosities and air-filled capacities. The concentrations of $NH_4-N$, $P_2O_5$ and K increased as the incorporation rate of castor seed meal, phosphate ore, and langbenite, respectively, were elevated during the root medium formulations. The PPV-1 and PPV-4 substrates produced high stem length, stem diameter, shoot fresh weight, leaf area and root length among eight substrate. Root fresh weight was heaviest in PPV-4 compound nursery media. The results of this experiment will be utilized in the new substrate application for ginseng organic culture in shaded vinyl house.

• Horticultural Science & Technology
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• v.19 no.1
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• pp.92-97
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• 2001

This experiment was conducted to find out optimum substrate and concentration of nutrient solution for mass production of sweet basil by pot culture. Growth depending on concentration of nutrient solution was different to some extent; the growth of plants was usually better in one-fold and two-fold concentration of nutrient solution but three-fold one was poor. Plants grown in cocopeat showed better growth, but peatmoss gave an adverse effect. Sweet basil grown in substrate mixed with cocopeat and perlite (1:1, v:v) was highest in essential oil content. After all, cultural practice by one-fold concentration of herb nutrient solution in substrate mixed with cocopeat and perlite (1:1, v:v) was recommended for better growth and higher essential oil content of sweet basil.

• Microbiology and Biotechnology Letters
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• v.23 no.6
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• pp.781-783
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• 1995

A method is described for the rapid and simple isolation of genomic DNA from 3 ml culture of Bifidobacterium. The method is expected to be used in gene manipulation of Bifidobacterium spp. The isolated DNA using this method is shown to be an excellent substrate for restriction endonuclease digestion and ligation with T4 DNA ligase.

• Journal of Mushroom
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• v.16 no.2
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• pp.70-73
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• 2018

To determine the optimum amount of spent oyster mushroom substrate (SOMS) for use in cultivation of Lentinula edodes, the chemical properties of the substrate and culture conditions of Lentinula edodes were investigated. Replacing 20-50% of a sawdust substrate with SOMS yielded a C/N ratio of 62-76. In case of substrates containing SOMS, the total nitrogen and phenolic contents of were higher, whereas fructose and organic acid contents were lower than those of the control substrate. Cultivation tests showed that the 3-cycle yield of 20% SOMS treatment was 286.7 g, similar to that of the control, while 50% SOMS treatment significantly decreased the yield. In conclusion, development of oak mushroom substrate using SOMS would recycle waste products and decrease material costs.

• Journal of Korean Society of Water and Wastewater
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• v.22 no.2
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• pp.187-193
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• 2008

Biological removal capacities for volatile organic compounds (VOCs) were determined using a yeast strain, Candida tropicalis. In this study, VOCs including toluene, benzene, p-xylene, and styrene as single substrates or mixtures were tested in the batch culture of the yeast strain. In addition, a kinetic model was applied to evaluate substrate interactions between the VOCs. The yeast strain was able to biodegrade each VOC effectively as a growth substrate, implying it could applied to wide range of VOCs. When the yeast strain was subjected to VOCs in mixtures, the biodegradation rate of one substrate were either increased (stimulated) or decreased (inhibited) by the presence of the others. Both benzene and toluene were inhibited by the other VOCs, and substrate interaction parameters estimated in the model indicated that styrene was the strongest inhibitor for the benzene and toluene biodegradation. Meanwhile, the biodegradation of p-xylene and styrene was stimulated by the presence of either benzene or toluene. The biodegradation rate of p-xylene was significantly increased especially by the presence of toluene, and the styrene biodegradation was enhanced greatly by the benzene addition. The results of the substrate interaction by the yeast strain suggest that the biodegradation rates for the VOCs in mixtures should be carefully evaluated. Furthermore, the competitive inhibition coefficient could be applied as a useful index to determine the substrate interaction

• BMB Reports
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• v.33 no.4
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• pp.349-352
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• 2000

Proteins that are involved in cellular signal cascade experience phosphorylation and dephosphorylation cycles in their tyrosine residue(s) during cell adhesion. In order to identify the protein(s), which tyrosine desidues are specifically phosphorylated when the cells attached to the substrate, we compared the tyrosine phosphorylation level of proteins between suspension and adhered culture condition in rat fibroblast 3Yl cells. We found that a cluster of 70 kDa protein was specifically phosphorylated when the cells adhered to the substrate, but did not effect the cells held in suspension. The phosphorylated protein is identified as paxillin, a focal adhesion protein in immunoprecipitation and immunobloting analysis. These results suggest that the tyrosine phosphorylation of paxillin may play a role in cell-substrate adhesion.

• Asian-Australasian Journal of Animal Sciences
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• v.25 no.5
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• pp.642-647
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• 2012

Eight continuous culture fermenters were used in a completely randomized design to evaluate various nutritional values of Kochia (Kochia scoparia) compared with Atriplex (Atriplex dimorphostegia). Dried and pelleted samples (leaves and stems) provided substrate for metabolism by ruminal microbes maintained in a continuous culture fermentation system. Results indicated that there were no differences (p>0.05) in dry matter (DM) and crude protein (CP) digestibility between the two halophytic plants. Atriplex had higher (p<0.05) organic matter (OM) digestibility compared with Kochia. Neutral detergent fiber (aNDF) digestibility of Atriplex (411 g/kg) was higher (p<0.05) than that of Kochia (348 g/kg), however acid detergent fiber (ADF) digestibility was higher (p<0.05) in Kochia compared with Atriplex (406 vs. 234 g/kg). There were no differences (p>0.05) between the two halophytic plants in molar proportion of acetate and propionate, but the concentration of butyrate and valerate in Kochia were about two fold of Atriplex (p<0.05). When Kochia provided substrate to the microbes, protein synthesis was higher (p<0.05) compared with feeding Atriplex (5.96 vs. 4.85 g N/kg of OM truly digested). It was concluded that Kochia scoparia and Atriplex dimorphostegia had similar digestibility of DM and CP. It appears that these halophytic plants may not have enough digestible energy for high producing ruminants.