• 제목/요약/키워드: Structure diversity

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Analysis of the genetic diversity and population structure of Lindera obtusiloba (Lauraceae), a dioecious tree in Korea

  • Ho Bang Kim;Hye-Young Lee;Mi Sun Lee;Yi Lee;Youngtae Choi;Sung-Yeol Kim;Jaeyong Choi
    • Journal of Plant Biotechnology
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    • 제50권
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    • pp.207-214
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    • 2023
  • Lindera obtusiloba (Lauraceae) is a dioecious tree that is widely distributed in the low-altitude montane forests of East Asia, including Korea. Despite its various pharmacological properties and ornamental value, the genetic diversity and population structure of this species in Korea have not been explored. In this study, we selected 6 nuclear and 6 chloroplast microsatellite markers with polymorphism or clean cross-amplification and used these markers to perform genetic diversity and population structure analyses of L. obtusiloba samples collected from 20 geographical regions. Using these 12 markers, we identified a total of 44 alleles, ranging from 1 to 8 per locus, and the average observed and expected heterozygosity values were 0.11 and 0.44, respectively. The average polymorphism information content was 0.39. Genetic relationship and population structure analyses revealed that the natural L. obtusiloba population in Korea is composed of 2 clusters, possibly due to two different plastid genotypes. The same clustering patterns have also been observed in Lindera species in mainland China and Japan.

A Polarization Diversity Patch Antenna with a Reconfigurable Feeding Network

  • Lee, Sung Woo;Sung, Youngje
    • Journal of electromagnetic engineering and science
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    • 제15권2호
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    • pp.115-119
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    • 2015
  • This paper proposes a reconfigurable square-patch antenna with polarization diversity. The proposed antenna consists of a square radiating patch and a Y-shaped feed structure with two PIN diodes. The shape of the feed structure can be changed by adjusting the bias states of the two PIN diodes, which helps switch between two orthogonal linear polarizations. The polarization diversity characteristic is validated by the simulated current distribution and the measured radiation pattern.

Genetic Diversity of Ascaris in China Assessed Using Simple Sequence Repeat Markers

  • Zhou, Chunhua;Jian, Shaoqing;Peng, Weidong;Li, Min
    • Parasites, Hosts and Diseases
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    • 제56권2호
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    • pp.175-181
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    • 2018
  • The giant roundworm Ascaris infects pigs and people worldwide and causes serious diseases. The taxonomic relationship between Ascaris suum and Ascaris lumbricoides is still unclear. The purpose of the present study was to investigate the genetic diversity and population genetic structure of 258 Ascaris specimens from humans and pigs from 6 sympatric regions in Ascaris-endemic regions of China using existing simple sequence repeat data. The microsatellite markers showed a high level of allelic richness and genetic diversity in the samples. Each of the populations demonstrated excess homozygosity (Ho0). According to a genetic differentiation index (Fst=0.0593), there was a high-level of gene flow in the Ascaris populations. A hierarchical analysis on molecular variance revealed remarkably high levels of variation within the populations. Moreover, a population structure analysis indicated that Ascaris populations fell into 3 main genetic clusters, interpreted as A. suum, A. lumbricoides, and a hybrid of the species. We speculated that humans can be infected with A. lumbricoides, A. suum, and the hybrid, but pigs were mainly infected with A. suum. This study provided new information on the genetic diversity and population structure of Ascaris from human and pigs in China, which can be used for designing Ascaris control strategies. It can also be beneficial to understand the introgression of host affiliation.

Performance of differential Space-time Block Coded MIMO System using Cyclic Delay Diversity

  • Kim, Yoon-Hyun;Yang, Jae-Soo;Kim, Jin-Young
    • 한국정보통신설비학회:학술대회논문집
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    • 한국정보통신설비학회 2007년도 학술대회
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    • pp.41-45
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    • 2007
  • Multi-input multi-output (MIMO) system can increase data rate, capacity and bit error rate (BER) performance compare to traditional single antenna system. However MIMO technique is pointed out the problem that has high complexity to design receiver. So a recent trend of research on the MIMO system pays more attention to simplified implementation of receiver structure. In this paper, we propose differential space time block code (STBC) for MIMO system with cyclic delay diversity (CDD). This structure can provide a very close performance to that of the conventional diversity scheme with maximum likelihood (ML) detection without channel estimation block while the receiver structure is highly simplified. Bit error rate (BER) performance of the proposed system is simulated for an AWGN channel by theoretical and simulated approaches. The results of this paper can be applicable to the 4G mobile multimedia communication systems.

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Genetic Diversity and Population Structure of a Korean Rice Germplasm Based on DNA Profiles

  • Lee, Kyung Jun;Lee, Jung-Ro;Shin, Myoung-Jae;Cho, Gyu-Taek;Ma, Kyung-Ho;Lee, Gi-An;Chung, Jong-Wook
    • 한국작물학회지
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    • 제63권1호
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    • pp.1-7
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    • 2018
  • Information on the patterns of genetic diversity and population structure is essential for the rational use and efficient management of germplasms; accurate information aids in monitoring germplasms, and can also be used to predict potential genetic gains. In this study, we assessed genetic diversity, focusing on Korean rice accessions for theand their sustainable conserved diversity. Using DNA profiling with 12 simple sequence repeat (SSR) markers, we detected a total of 333 alleles among 2,016 accessions. The number of alleles ranged from 21 to 53, with an average of 27.8. Average polymorphism information content was 0.797, with the lowest being 0.667 and the highest 0.940. CA cluster analysis and the model-based population structure revealed two main groups that could be subdivided into five subgroups. Analysis of the molecular variance study based on the SSR profile data showed 5% variance among the profiles, whereas we recorded 93% variance among individuals and 2% variance within individuals. Specifically, the utilized diversity for of the breeding program is restricted in that cultivars were located in limited clades. These results revealed that preserving the diversity of Korean landraces could be useful sources for breeding new rice cultivars, and cwould be the basis for the sustainable conservation and utilization of a Korean rice germplasm.

Genetic diversity and population structure between natural and cultivated populations of sea lettuce, Enteromorpha prolifera, in Korea revealed by RAPD markers

  • Chang, Hyo-Jae;Huh, Man-Kyu;Huh, Hong-Wook;Lee, Bok-Kyu
    • 한국어업기술학회:학술대회논문집
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    • 한국어업기술학회 2003년도 춘계 수산관련학회 공동학술대회발표요지집
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    • pp.279-280
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    • 2003
  • Although it has been known though many morphological and physiological studies, its genetic diversity and population structure have not yet been investigated in this species. Therefore, detailed studies, in particular at the DNA level, on genetic diversity of natural populations of wild sea lettuce, and genetic relationships between natural sea lettuce and cultivated sea lettuce are necessary from the viewpoint of plant evolution. (omitted)

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SSR 마커를 이용한 남아시아와 동남아시아 아마란스 자원의 유전적 다양성 비교 (Comparison of Genetic Diversity among Amaranth Accessions from South and Southeast Asia using SSR Markers)

  • 왕소강;박용진
    • 한국약용작물학회지
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    • 제21권3호
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    • pp.220-228
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    • 2013
  • This study was conducted to assess the genetic diversity and population structure of 70 amaranth accessions collected from South and Southeast Asia using 14 simple sequence repeat (SSR) markers. In total, 67 alleles were detected, with an average of 4.79 per locus. Rare alleles comprised a large portion (46.3%) of the detected alleles, and 29 unique alleles associated with rice accessions were also discovered. The mean major allele frequency (MAF), genetic diversity (GD) and polymorphic information content (PIC) of the 14 SSR loci were 0.77, 0.36, and 0.34, respectively. A model-based structural analysis revealed the presence of three subpopulations. The genetic relationships revealed by the neighbor-joining tree method were fairly consistent with the structure-based membership assignments for most of the accessions. All 70 accessions showed a clear relationship to each cluster without any admixtures. We observed a relatively low extent of genetic exchange within or among amaranth species from South and Southeast Asia. The genetic diversity results could be used to identify amaranth germplasms and so facilitate their use for crop improvement.

Phylogeography of Gloiopeltis furcata sensu lato (Gigartinales, Rhodophyta) provides the evidence of glacial refugia in Korea and Japan

  • Yang, Mi Yeon;Fujita, Daisuke;Kim, Myung Sook
    • ALGAE
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    • 제36권1호
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    • pp.13-24
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    • 2021
  • The present-day genetic structure of macroalgal species reflects both geographical history and oceanic circulation patterns as well as anthropogenic introduction across native ranges. To precisely understand the genetic diversity and how the factors shape the current population structure of Gloiopeltis furcata sensu lato, we determined the mitochondrial 5' end of cytochrome c oxidase subunit I (COI-5P) sequences for 677 individuals sampled from 67 sites spanning almost the entire distribution range in Korea and Japan. Results from the phylogenetic analysis and haplotype distribution revealed eleven distinct lineages within G. furcata s.l. along the Korea-Japan coastal areas and displayed divergent phylogeographic patterns among lineages. Despite the closely related lineages distributed in same habitats as high rocky intertidal zone, they display different phylogeographic patterns among lineages. The populations from the south of Korea-Japan harbored the highest genetic diversity and unique endemism in comparison with other populations in the distribution range. This could be the evidence of southern refugia for G. furcata s.l. in the Northwest (NW) Pacific and the recent migration from native to introduced region. The reason is that an exceptional distribution pattern was found high genetic diversity in Hakodate of Japan where is the northern location in the NW Pacific. Our results imply the contemporary influence on the distribution due to current circulation pattern and anthropogenic effects. These phylogeographic findings provide the important insight into cryptic species diversity and the detailed distribution pattern of Gloiopeltis in the NW Pacific.

Comparison of Genetic Diversity and Population Structure of Kalopanax pictus (Araliaceae) and its Thornless Variant Using RAPD

  • Huh, Man-Kyu;Jung, Sang-Duk;Moon, Heung-Kyu;Kim, Sea-Hyun;Sung, Jung-Sook
    • 한국약용작물학회지
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    • 제13권2호
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    • pp.69-74
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    • 2005
  • Kalopanax pictus is a long-lived woody species mostly distributed in East Asia. K. pictus has been regarded as medically and ecologically important species in Korea. Thornless castor aralia variant, local name 'Cheongsong' is an endemic to Cheongsong province in Korea. Random amplified polymorphic DNA (RAPD) was used to investigate the genetic variation and structure of Korean populations of two species. A high level of genetic variation was found in six K. pictus populations. Twelve primers revealed 49 loci, of which 29 were polymorphic (59.2%). Nei's gene diversity for K.pictus and K. pictus variant were 0.119 and 0.098, respectively. Mean of genetic diversity in K. pictus was higher than average values for species with similar life history traits. The asexual and sexual reproduction, perennial habitat, and longevity are proposed as possible factors contributing to high genetic diversity. An indirect estimate of the number of migrants per generation (Nm=0.857) indicated that gene flow was not extensive among Korean populations of K.pictus. It is suggested that the isolation of geographical distance and reproductive isolation between K.pictus and K.pictus variant populations may have played roles in shaping the population structure of this species.