• Title/Summary/Keyword: Structure alignment

Search Result 440, Processing Time 0.027 seconds

Secondary Structure and Phylogenetic Implications of ITS2 in the Genus Tricholoma

  • Suh, Seok-Jong;Kim, Jong-Guk
    • Journal of Microbiology and Biotechnology
    • /
    • v.12 no.1
    • /
    • pp.130-136
    • /
    • 2002
  • The internal transcribed spacer (ITS) region in the genus Tricholoma was analyzed, including for its primary nucleotide sequence and secondary structural characterization. The secondary structures of the ITS2 region in the genus Tricholoma were identified for use in bioinformatic processes to study molecular evolution and compare secondary structures. Ten newly sequenced ITS regions were added to the analysis and submitted to the GenBank database. The resulting structure from a minimum energy algorithm indicated the four-domain model, as previously suggested by others. The conserved secondary structure of the ITS2 sequences of the genus Tricholoma exhibited certain unique features, including pyrimidine tracts in the loops of domain A and a complete structure containing four domains, with motifs identified in other ITS2 secondary structures. A phylogenetic tree was derived from sequence alignment based on the secondary structures. From the resulting maximum parsimonious tree, it was found that the species in the genus Tricholoma had evolved monophyletically and were composed of four groups, as supported by the bootstrapping values and pileus color.

Study on Assembly of TF Coil Structure in KSTAR Tokamak (KSTAR 토카막 장치에서 TF 자석 구조물의 조립에 관한 검토)

  • Kim, K.M.;Choi, C.H.;Hong, K.H.;Yang, H.L.;Yu, I.K.;Her, N.I.;Sa, J.W.;Kim, H.K.;Kim, G.H.;Kim, S.T.;Kim, H.T.;Yang, J.S.;Bak, J.S.;Kim, C.H.
    • Proceedings of the KSME Conference
    • /
    • 2003.11a
    • /
    • pp.1262-1267
    • /
    • 2003
  • TF magnet structures are the main structural components in the KSTAR magnet systems to protect the superconducting coils from mechanical, electrical, and thermal loads. TF coil structure supports CS and PF coil system. The inter-coil structure contains adjustable shear keys and conical bolts to provide pre-loading in toroidal direction and to resist against in-plane and out-of-plane forces that are the most critical loads on the TF magnet system. The conical bolts and shear keys are specially designed to assemble easily and to provide a convenient accommodation for a good alignment. The connection plate that is one of the prototype fabrications had been manufactured to study adjustability of conical bolts and shear keys for assembly of TF coil structure. We could measure the misalignments at the keyways and conical holes with the misalignment measuring instrument.

  • PDF

Backbone 1H, 15N and 13C Resonance Assignment and Secondary Structure Prediction of HP0062 (O24902_HELPY) from Helicobacter pylori

  • Jang, Sun-Bok;Ma, Chao;Park, Sung-Jean;Kwon, Ae-Ran;Lee, Bong-Jin
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.13 no.2
    • /
    • pp.117-125
    • /
    • 2009
  • HP0062 is an 86 residue hypothetical protein from Helicobacter pylori strain 26695. HP0062 was identified ESAT-6/WXG100 superfamily protein based on structure and sequence alignment and also contains leucine zipper domain sequence. Here, we report the sequence-specific backbone resonance assignment of HP0062. About 97.7% of all $^1H_N,\;^{15}N,\;^{13}C_{\alpha},\;^{13}C_{\beta}\;and\;^{13}C=O$ resonances were assigned unambiguously. We could predict the secondary structure of HP0062 by analyzing the deviation of the $^{13}C_{alpha}\;and\;^{13}C_{\beta}$ chemical shifts from their respective random coil values. Secondary structure prediction shows that HP0062 consist of two ${\alpha}$-helices. This study is a prerequisite for determining the solution structure of HP0062 and can be used for the study on interaction between HP0062 and DNA and other Helicobacter pylori proteins.

Improvement of hole transport from p-Si with interfacial layers for silicon solar cells

  • Oh, Gyujin;Kim, Eun Kyu
    • Proceedings of the Korean Vacuum Society Conference
    • /
    • 2016.02a
    • /
    • pp.239.2-239.2
    • /
    • 2016
  • Numerous studies and approaches have been performed for solar cells to improve their photoelectric conversion efficiencies. Among them, the study for electrode containing transparent conducting oxide (TCO) layers is one of issues as well as for the cell structure based on band theory. In this study, we focused on an interfacial layer between p-type silicon and indium tin oxide (ITO) well-known as TCO materials. According to current-voltage characteristics for the sample with the interfacial layers, the improvement of band alignment between p-type silicon and ITO was observed, and their ohmic properties were enhanced in the proper condition of deposition. To investigate cause of this improvement, spectroscopic ellipsometry and ultraviolet photoelectron spectroscopy were utilized. Using these techniques, band alignment and defect in the band gap were examined. The major materials of the interfacial layer are vanadium oxide and tungsten oxide, which are notable as a hole transfer layer in the organic solar cells. Finally, the interfacial layer was applied to silicon solar cells to see the actual behavior of carriers in the solar cells. In the case of vanadium oxide, we found 10% of improvement of photoelectric conversion efficiencies, compared to solar cells without interfacial layers.

  • PDF

A Single Feedback Based Interference Alignment for Three-User MIMO Interference Channels with Limited Feedback

  • Chae, Hyukjin;Kim, Kiyeon;Ran, Rong;Kim, Dong Ku
    • KSII Transactions on Internet and Information Systems (TIIS)
    • /
    • v.7 no.4
    • /
    • pp.692-710
    • /
    • 2013
  • Conventional interference alignment (IA) for a MIMO interference channel (IFC) requires global and perfect channel state information at transmitter (CSIT) to achieve the optimal degrees of freedom (DoF), which prohibits practical implementation. In order to alleviate the global CSIT requirement caused by the coupled relation among all of IA equations, we propose an IA scheme with a single feedback link of each receiver in a limited feedback environment for a three-user MIMO IFC. The main feature of the proposed scheme is that one of users takes out a fraction of its maximum number of data streams to decouple IA equations for three-user MIMO IFC, which results in a single link feedback structure at each receiver. While for the conventional IA each receiver has to feed back to all transmitters for transmitting the maximum number of data streams. With the assumption of a random codebook, we analyze the upper bound of the average throughput loss caused by quantized channel knowledge as a function of feedback bits. Analytic results show that the proposed scheme outperforms the conventional IA scheme in term of the feedback overhead and the sum rate as well.

Synthesis and Nonlinear Optical Properties of Novel Y-Type Polyesters with Enhanced Thermal Stability of Second Harmonic Generation

  • Kim, Jin-Hyang;Lee, Ju-Yeon;Won, Dong-Seon;Rhee, Bum-Ku
    • Macromolecular Research
    • /
    • v.15 no.6
    • /
    • pp.506-512
    • /
    • 2007
  • 2,3-Di-(2'-hydroxyethoxy)-4'-nitrostilbene (3) was prepared and condensed with terephthaloyl chloride, adipoyl chloride, and sebacoyl chloride to yield novel Y-type polyesters (4-6) containing the NLO-chromophores 2,3-dioxynitrostilbenyl groups, which constituted parts of the polymer backbones. Polymers 4-6 were soluble in common organic solvents such as acetone and N,N-dimethylformamide. Polymers 4-5 showed thermal stability up to $300^{\circ}C$ in thermogravimetric analysis with glass transition temperatures $(T_g)$, obtained from differential scanning calorimetry, in the range $81-95^{\circ}C$. The second harmonic generation (SHG) coefficients $(d_{33})$ of the poled polymer films at the 1064 nm fundamental wavelength were around $3.68{\times}10^{-9}$ esu. The dipole alignment exhibited high thermal stability up to $T_g$, and there was no SHG decay below $T_g$ due to the partial main-chain character of the polymer structure.

Synthesis and Properties of Novel Y-type Nonlinear Optical Polyester Containing Dioxynitroazobenzene Group with Enhanced Thermal Stability of Dipole Alignment

  • Kim, Mi-Sung;Cho, You-Jin;Song, Mi-Young;Lee, Ju-Yeon
    • Bulletin of the Korean Chemical Society
    • /
    • v.32 no.9
    • /
    • pp.3361-3366
    • /
    • 2011
  • New Y-type polyester (3) containing nitrophenylazoresorcinoxy groups as NLO chromophores, which are components of the polymer backbone, was prepared and characterized. Polyester 3 is soluble in common organic solvents such as N,N-dimethylformamide and acetone. It shows a thermal stability up to $240^{\circ}C$ in thermogravimetric analysis with glass-transition temperature ($T_g$) obtained from differential scanning calorimetry near $116^{\circ}C$. The second harmonic generation (SHG) coefficient ($d_{33}$) of poled polymer film at the 1064 nm fundamental wavelength is around $4.63{\times}10^{-9}$ esu. The dipole alignment exhibits a thermal stability even at $4^{\circ}C$ higher than $T_g$, and there is no SHG decay below $120^{\circ}C$ due to the partial main-chain character of polymer structure, which is acceptable for NLO device applications.

Improvement of optical properties in patterned vertical alignment mode with modified electrodes structure (전극구조 개선을 통한 PVA 셀의 광학특성 향상방안)

  • Gim, Hye-Young;Kim, Woo-Il;Kim, Dae-Hyun;Kwon, Dong-Won;Im, Se-Hyeon;Lee, Seung-Hee;Jeong, Yeon-Hak;Ryu, Jae-Jin;Kim, Kyeong-Hyeon
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
    • /
    • 2010.06a
    • /
    • pp.172-172
    • /
    • 2010
  • The Patterned vertical alignment (PVA) mode has many advantages such as perfect dark state at the normal direction and wide viewing angle. However, PVA mode needs additional process to pattern electrodes of both substrates and complicated assembly process. Moreover, this mode shows slow response time. To overcome these problems, we use plane shape ITO on top substrate instead of patterned electrode and form proper tilt angle of LC director on the surface while maintaining these original merits. Consequently, we achieve fast response time and improve transmittance.

  • PDF

High Performance Polyimides for Applications in Microelectronics and Flat Panel Displays

  • Ree Moonhor
    • Macromolecular Research
    • /
    • v.14 no.1
    • /
    • pp.1-33
    • /
    • 2006
  • Polyimides (PIs) exhibit excellent thermal stability, mechanical, dielectric, and chemical resistance properties due to their heterocyclic imide rings and aromatic rings on the backbone. Due to these advantageous properties, PIs have found diverse applications in industry. Most PIs are insoluble because of the nature of the high chemical resistance. Thus, they are generally used as a soluble precursor polymer, which forms complexes with solvent molecules, and then finally converts to the corresponding polyimides via imidization reaction. This complexation with solvent has caused severe difficulty in the characterization of the precursor polymers. However, significant progress has recently been made on the detailed characterization of PI precursors and their imidization reaction. On the other hand, much research effort has been exerted to reduce the dielectric constant of PIs, as demanded in the microelectronics industry, through chemical modifications, as well as to develop high performance, light-emitting PIs and liquid crystal (LC) alignment layer PIs with both rubbing and rubbing-free processibility, which are desired in the flat-panel display industry. This article reviews this recent research progresses in characterizing PIs and their precursors and in developing low dielectric constant, light-emitting, and LC alignment layer PIs.

Preparation of Novel T-type Polyurethanes with High Thermal Stability of Second Harmonic Generation and Their Nonlinear Optical Properties

  • Jang, Han-Na;Lee, Ga-Young;Lee, Ju-Yeon
    • Bulletin of the Korean Chemical Society
    • /
    • v.29 no.4
    • /
    • pp.811-816
    • /
    • 2008
  • 2,5-Di-(2'-hydroxyethoxy)benzylidenemalononitrile (3) was prepared and polymerized with 2,4-toluenediisocyanate and 3,3'-dimethoxy-4,4'-biphenylenediisocyanate to yield novel T-type polyurethanes 4 and 5 containing 2,5-dioxybenzylidenemalononitrile, nonlinear optical (NLO)-chromophores as part of the polymer backbones. Polyurethanes 4 and 5 were soluble in common organic solvents such as acetone and N,Ndimethylformamide and showed a thermal stability up to $250{^{\circ}C}$ with glass-transition temperatures ($T_g$) in the range $119-146{^{\circ}C}$. The second harmonic generation (SHG) coefficients ($d_{33}$) of poled polymer films at 1064 nm fundamental wavelength were around $5.82{\times}10^{-9}$ esu. The dipole alignment exhibited high thermal stability up to $T_g$, and there was no SHG decay below $140{^{\circ}C}$ due to the partial main-chain character of the polymer structure, which was acceptable for nonlinear optical device applications.