• Title/Summary/Keyword: Step-Pool

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Utilization of whole genome treasure for the library construction of industrial enzymes

  • Kim, Won-Ho;Cho, Kyoung-Won;Jung, In-Su;Choi, Keum-Hwa;Hur, Byung-Ki;Kim, Geun-Joong
    • 한국생물공학회:학술대회논문집
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    • 2003.10a
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    • pp.815-820
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    • 2003
  • A huge database resulted from whole genome sequencing has provided a possibility of new information that is likely to extent the scope and thus changes the way of approach for the functional assigning of putative open reading frames annotated by whole genome sequence analyses. These are mainly realized by ease, one-step identification of putative genes using genomics or proteomics tools. A major challenge remained in biotechnology may translate these informations into better ways to screen or select a gene as a representative sequence. Further attempts to mine the related whole genes or partial DNA fragment from whole genome treasure, and then the incorporation of these sequences into a representative template, will result in the use of putative genes that can be translated into functional proteins or allowed the generation of new lineages as a valuable pool. Such screens enable rapid biochemical analysis and easy isolation of the target activity, thereby accelerating the screening of novel enzymes from the expanded library with related sequences. Information-based PCR amplification of whole genes and reconstitution of functional DNA fragments will provide a platform for expanding the functional spaces of potential enzymes, especially when used mixed- or metagenome as gene resources.

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2D Finite Element Modeling of Bed Elevation Change in a Curved Channel (유한요소법을 이용한 만곡수로에서의 2차원 하상변동 수치모형)

  • Kim Tae Beom;Choi Sung-Uk;Min Kyung Duck
    • Proceedings of the Korea Water Resources Association Conference
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    • 2005.05b
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    • pp.414-418
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    • 2005
  • A finite element model is developed for the numerical simulation of bed elevation change in a curved channel. The SU/PG (Streamline-Upwind/Petrov-Galerkin) method is used to solve 2D shallow water equations and the BG (Bubnov-Galerkin) method is used for the Exner equation. For the time derivative terms, the Crank-Nicolson scheme is used. The developed model is a decoupled model in a sense that the bed elevation does not change simultaneously with the flow during the computational time step. The total load formula with is used for the sediment transport model. The slip conditions are described along the lateral boundaries. The effects of gravity force due to geometry change and the secondary flows in a curved channel are considered in the model. For the verification, the model is applied to two laboratory experiments. The first is $140^{\circ}$ bended channel data at Delft Hydraulics Laboratory and the second is $140^{\circ}$ bended channel data at Laboratory of Fluid Mechanics of the Delft University of Technology. The finite element grid is constructed with linear quadrilateral elements. It is found that the computed results are in good agreement with measured data, showing a point bar at the inner bank and a pool at the outer bank.

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Identifying the predictor variables of juvenile delinquency for the development of prevention programs (비행 예방 프로그램의 개발을 위한 청소년비행 예측 요인의 발굴)

  • Um, Myung-Yong
    • Korean Journal of Social Welfare
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    • v.42
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    • pp.254-289
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    • 2000
  • This study conducted a step-wise discriminant analysis to determine which variables play key roles in distinguishing among 3 mutually exclusive delinquent groups - disclosed delinquency group, closed delinquency group, and no delinquency group - and to 'develop a procedure for predicting group membership for new cases whose group membership is undetermined. Variables included in this study were collected by the review of previous empirical studies, which were identified as related to juvenile delinquency. The variables can be classified as character-related variables, family-related variables, school-related variables, peer-related variables, and socioeconomic variables. A sample of 693 youths were employed to conduct the statistical analysis. Out of 35 possible predictors of juvenile delinquency 14 variables were included in the pool of predicting variables. This study used a hold-out sample (n=300) to test if the linear discriminant function classify cases correctly into one of 3 groups. The percentage of cases classified correctly by the discriminant function was turned out to be acceptable in the area of social sciences. Discussions and suggestions were provided in terms of prevention and intervention for juvenile delinquency with focus on the 14 predictor variables.

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Spontaneous Steam Explosions Observed In The Fuel Coolant Interaction Experiments Using Reactor Materials

  • Jinho Song;Park, Ikkyu;Yongseung Sin;Kim, Jonghwan;Seongwan Hong;Byungtae Min;Kim, Heedong
    • Nuclear Engineering and Technology
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    • v.34 no.4
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    • pp.344-357
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    • 2002
  • The present paper reports spontaneous steam explosions observed in fuel coolant interaction experiments using prototypic reactor materials. Pure ZrO$_2$ and a mixture of UO$_2$ and ZrO$_2$ are used. A high temperature molten material in the form of a jet is poured into a subcooled water pool located in a pressure vessel. An induction skull melting technique is used for the melting of the reactor material. In both tests using pure ZrO$_2$ and a mixture of UO$_2$ and ZrO$_2$, either a quenching or a spontaneous steam explosion was observed. The morphology of debris and pressure profile clearly indicate the differences between the qunching cases and explosion cases. The dynamic pressure. dynamic impulse, water temperature, melt temperature, and static pressure Inside the containment chamber were measured . As the spontaneous steam explosion for the reactor material is firstly observed in the present experiments, the results of present experiments could be a siginificant step forward the understanding the explosion of the reactor material.

Sipping Test Technology for Leak Detection of Fission Products from Spent Nuclear Fuel (사용후핵연료 핵분열생성물 누출탐상 Sipping 검사기술)

  • Shin, Jung Cheol;Yang, Jong Dae;Sung, Un Hak;Ryu, Sung Woo;Park, Young Woo
    • Transactions of the Korean Society of Pressure Vessels and Piping
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    • v.16 no.2
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    • pp.18-24
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    • 2020
  • When a damage occurs in the nuclear fuel burning in the reactor, fission products that should be in the nuclear fuel rod are released into the reactor coolant. In this case, sipping test, a series of non-destructive inspection methods, are used to find leakage in nuclear fuel assemblies during the power plant overhaul period. In addition, the sipping test is also used to check the integrity of the spent fuel for moving to an intermediate dry storage, which is carried out as the first step of nuclear decommissioning, . In this paper, the principle and characteristics of the sipping test are described. The structure of the sipping inspection equipment is largely divided into a suction device that collects fissile material emitted from a damaged assembly and an analysis device that analyzes their nuclides. In order to make good use of the sipping technology, the radioactive level behavior of the primary system coolant and major damage mechanisms in the event of nuclear fuel damage are also introduced. This will be a reference for selecting an appropriate sipping method when dismantling a nuclear power plant in the future.

A Match-Making System Considering Symmetrical Preferences of Matching Partners (상호 대칭적 만족성을 고려한 온라인 데이트시스템)

  • Park, Yoon-Joo
    • Journal of Intelligence and Information Systems
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    • v.18 no.2
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    • pp.177-192
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    • 2012
  • This is a study of match-making systems that considers the mutual satisfaction of matching partners. Recently, recommendation systems have been applied to people recommendation, such as recommending new friends, employees, or dating partners. One of the prominent domain areas is match-making systems that recommend suitable dating partners to customers. A match-making system, however, is different from a product recommender system. First, a match-making system needs to satisfy the recommended partners as well as the customer, whereas a product recommender system only needs to satisfy the customer. Second, match-making systems need to include as many participants in a matching pool as possible for their recommendation results, even with unpopular customers. In other words, recommendations should not be focused only on a limited number of popular people; unpopular people should also be listed on someone else's matching results. In product recommender systems, it is acceptable to recommend the same popular items to many customers, since these items can easily be additionally supplied. However, in match-making systems, there are only a few popular people, and they may become overburdened with too many recommendations. Also, a successful match could cause a customer to drop out of the matching pool. Thus, match-making systems should provide recommendation services equally to all customers without favoring popular customers. The suggested match-making system, called Mutually Beneficial Matching (MBM), considers the reciprocal satisfaction of both the customer and the matched partner and also considers the number of customers who are excluded in the matching. A brief outline of the MBM method is as follows: First, it collects a customer's profile information, his/her preferable dating partner's profile information and the weights that he/she considers important when selecting dating partners. Then, it calculates the preference score of a customer to certain potential dating partners on the basis of the difference between them. The preference score of a certain partner to a customer is also calculated in this way. After that, the mutual preference score is produced by the two preference values calculated in the previous step using the proposed formula in this study. The proposed formula reflects the symmetry of preferences as well as their quantities. Finally, the MBM method recommends the top N partners having high mutual preference scores to a customer. The prototype of the suggested MBM system is implemented by JAVA and applied to an artificial dataset that is based on real survey results from major match-making companies in Korea. The results of the MBM method are compared with those of the other two conventional methods: Preference-Based Matching (PBM), which only considers a customer's preferences, and Arithmetic Mean-Based Matching (AMM), which considers the preferences of both the customer and the partner (although it does not reflect their symmetry in the matching results). We perform the comparisons in terms of criteria such as average preference of the matching partners, average symmetry, and the number of people who are excluded from the matching results by changing the number of recommendations to 5, 10, 15, 20, and 25. The results show that in many cases, the suggested MBM method produces average preferences and symmetries that are significantly higher than those of the PBM and AMM methods. Moreover, in every case, MBM produces a smaller pool of excluded people than those of the PBM method.

Parallel Cell-Connectivity Information Extraction Algorithm for Ray-casting on Unstructured Grid Data (비정렬 격자에 대한 광선 투사를 위한 셀 사이 연결정보 추출 병렬처리 알고리즘)

  • Lee, Jihun;Kim, Duksu
    • Journal of the Korea Computer Graphics Society
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    • v.26 no.1
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    • pp.17-25
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    • 2020
  • We present a novel multi-core CPU based parallel algorithm for the cell-connectivity information extraction algorithm, which is one of the preprocessing steps for volume rendering of unstructured grid data. We first check the synchronization issues when parallelizing the prior serial algorithm naively. Then, we propose a 3-step parallel algorithm that achieves high parallelization efficiency by removing synchronization in each step. Also, our 3-step algorithm improves the cache utilization efficiency by increasing the spatial locality for the duplicated triangle test process, which is the core operation of building cell-connectivity information. We further improve the efficiency of our parallel algorithm by employing a memory pool for each thread. To check the benefit of our approach, we implemented our method on a system consisting of two octa-core CPUs and measured the performance. As a result, our method shows continuous performance improvement as we add threads. Also, it achieves up to 82.9 times higher performance compared with the prior serial algorithm when we use thirty-two threads (sixteen physical cores). These results demonstrate the high parallelization efficiency and high cache utilization efficiency of our method. Also, it validates the suitability of our algorithm for large-scale unstructured data.

전략적 성과측정 및 평가시스템의 개발과 적용에 관한 연구

  • 이승규;라준영;이수열
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 1998.10a
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    • pp.114-117
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    • 1998
  • Failure to link business or operations strategy with the activities of operations is a critical problem in strategy implementation process. This problem comes from malfunction of a coordination and control mechanism to support the strategic direction by effective communication throughout the firm. A performance measurement and evaluation system (PMES) is thought as a core mechanism to monitor, direct. and induce desirable activities. We have developed a new strategic PMES (SPMES) that can effectively support the manufacturing strategy by utilizing customized performance measures. They are selected from a pool of four distinct but closely related sets of performance measures; financial, market, internal competency, and performance driver. In this paper, we briefly review the structure of the SPMES and explain the change process of PMES into SPMES in manufacturing business units. First we analyze the business environment and manufacturing strategy to identify short- and long-term issues facing the management. Next step is scrutinizing the objectives and activities of every function and process in the business unit. Using the information obtained, we can diagnose the gaps between currently effective PMES and desirable SPMES supporting the strategies. Once the problems in existing system are identified, we reconfigure the existing and new measures to establish a SPMES through a series of analyses, discussions and workshops. In organizing the selected measures in the new system, we use AHP method to reflect the relative importance of the measures in a specific business. Finally, modification or development of information system to support the SPMES wraps up the development process, and implementation begins. We explain the entire process using two cases to clarify the real meanings and the difficulties of PMES change process.

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Designing Tyrosinase siRNAs by Multiple Prediction Algorithms and Evaluation of Their Anti-Melanogenic Effects

  • Kwon, Ok-Seon;Kwon, Soo-Jung;Kim, Jin Sang;Lee, Gunbong;Maeng, Han-Joo;Lee, Jeongmi;Hwang, Gwi Seo;Cha, Hyuk-Jin;Chun, Kwang-Hoon
    • Biomolecules & Therapeutics
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    • v.26 no.3
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    • pp.282-289
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    • 2018
  • Melanin is a pigment produced from tyrosine in melanocytes. Although melanin has a protective role against UVB radiation-induced damage, it is also associated with the development of melanoma and darker skin tone. Tyrosinase is a key enzyme in melanin synthesis, which regulates the rate-limiting step during conversion of tyrosine into DOPA and dopaquinone. To develop effective RNA interference therapeutics, we designed a melanin siRNA pool by applying multiple prediction programs to reduce human tyrosinase levels. First, 272 siRNAs passed the target accessibility evaluation using the RNAxs program. Then we selected 34 siRNA sequences with ${\Delta}G{\geq}-34.6kcal/mol$, i-Score value ${\geq}65$, and siRNA scales score ${\leq}30$. siRNAs were designed as 19-bp RNA duplexes with an asymmetric 3' overhang at the 3' end of the antisense strand. We tested if these siRNAs effectively reduced tyrosinase gene expression using qRT-PCR and found that 17 siRNA sequences were more effective than commercially available siRNA. Three siRNAs further tested showed an effective visual color change in MNT-1 human cells without cytotoxic effects, indicating these sequences are anti-melanogenic. Our study revealed that human tyrosinase siRNAs could be efficiently designed using multiple prediction algorithms.

NATURAL CIRCULATION ANALYSIS CONSIDERING VARIABLE FLUID PROPERTIES WITH THE CUPID CODE (CUPID 코드의 유체 물성치 변화를 고려한 자연대류 해석)

  • Lee, S.J.;Park, I.K.;Yoon, H.Y.;Kim, J.
    • Journal of computational fluids engineering
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    • v.20 no.4
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    • pp.14-20
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    • 2015
  • Without electirc power to cool down the hot reactor core, passive systems utilizing natural circulation are becoming a big specialty of recent neculear systems after the severe accident in Fukusima. When we consider the natural circulation in a pool, thermal mixing phenomena may start from single phase circulation and can continue to two phase condition. Since the CUPID code, which has been developed for two-phase flow analysis, can deal with the phase transition phenomena, the CUPID would be pertinent to natural convection problems in single- and two-phase conditions. Thus, the CUPID should be validated against single- and two-phase natural circulation phenomena. For the first step of the validation process, this study is focused on the validation of single-phase natural circulation. Moreover, the CUPID code solves the fluid properties by the relationship to pressure and temperature from the steam table considering non-condensable gas effects, so that the effects from variable properties are included. Simple square thermal cavity problems are tested for laminar and turbulent conditions against numerical and experimental data. Throughout the investigation, it is found that the variable properties can affect the flow field in laminar condition, but the effect becomes weak in turbulence condition, and the CUPID code implementing steam table is capable of analyzing single phase natural circualtion phenomena.