• Title/Summary/Keyword: Step response

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Oxidation-induced conformational change of Hsp33, monitored by NMR

  • Lee, Yoo-Sup;Kim, Ji-Hoon;Seo, Min-Duk;Ryu, Kyoung-Seok;Kim, Eun-Hee;Won, Hyung-Sik
    • Journal of the Korean Magnetic Resonance Society
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    • v.19 no.3
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    • pp.99-105
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    • 2015
  • Hsp33 is a prokaryotic molecular chaperon that exerts a holdase activity upon response to an oxidative stress at raised temperature. In particular, intramolecular disulfide bond formation between the four conserved cysteines that bind a zinc ion in reduced state is known to be critically associated with the redox sensing. Here we report the backbone NMR assignment results of the half-oxidized Hsp33, where only two of the four cysteines form an intramolecular disulfide bond. Almost all of the resolved peaks could be unambiguously assigned, although the total assignments extent reached just about 50%. Majority of the missing assignments could be attributed to a significant spectral collapse, largely due to the oxidation-induced unfolding of the C-terminal redox-switch domain. These results support two previous suggestions: conformational change in the first oxidation step is localized mainly in the C-terminal zinc-binding domain, and the half-oxidized form would be still inactive. However, some additional regions appeared to be potentially changed from the reduced state, which suggest that the half-oxidized conformation would be an intermediate state that is more labile to heat and/or further oxidation.

Post-Chlorination Process Control based on Flow Prediction by Time Series Neural Network in Water Treatment Plant

  • Lee, HoHyun;Shin, GangWook;Hong, SungTaek;Choi, JongWoong;Chun, MyungGeun
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.16 no.3
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    • pp.197-207
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    • 2016
  • It is very important to maintain a constant chlorine concentration in the post chlorination process, which is the final step in the water treatment process (hereafter WTP) before servicing water to citizens. Even though a flow meter between the filtration basin and clear well must be installed for the post chlorination process, it is not easy to install owing to poor installation conditions. In such a case, a raw water flow meter has been used as an alternative and has led to dosage errors due to detention time. Therefore, the inlet flow to the clear well is estimated by a time series neural network for the plant without a measurement value, a new residual chlorine meter is installed in the inlet of the clear well to decrease the control period, and the proposed modeling and controller to analyze the chlorine concentration change in the well is a neuro fuzzy algorithm and cascade method. The proposed algorithm led to post chlorination and chlorination improvements of 1.75 times and 1.96 times respectively when it was applied to an operating WTP. As a result, a hygienically safer drinking water is supplied with preemptive response for the time delay and inherent characteristics of the disinfection process.

The Radio-Immunoassay Method for Ginsenoside $Rg_1$ of Korean Ginseng

  • Han, Byung-Hoon;Han, Yong-Nam;Sankawa, Ushio;Akyama, Minko;Kawashima, Koichiro
    • Korean Journal of Pharmacognosy
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    • v.11 no.3_4 s.43
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    • pp.133-140
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    • 1980
  • In order to develop the radio-immunoassay procedure for the ginsenoside $Rg_1$ we prepared the $Rg_1-BSA$ conjugate and $Rg_1-tyramine$ conjugate by condensing the $Rg_1-azide$, which was prepared by a series of six step chemical modification of the $Rg_1-side$ chain, with bovine serum albumin(BSA) or with tyramine. Rabbits were immunized by repeated injection of $Rg_1-BSA$ conjugate with Freund's Complete Adjuvant for 5 month long to obtain very potent $anti-Rg_1$ serum. The radio-labelled haptene was prepared by direct radio-iodination $(125_J)$ of $Rg_1-tyramine$ according to the chloramine-T method. The radio-immunoassay procedure was successfully furnished by using DCC method (dextran coated charcoal) and the anti-body titer of the anti-serum was found as being $1600{\sim}3200$ by using 15000cpm tracer per test. Calibration test using non-labelled $Rg_1$ showed linear competetive binding response in the $(8-300){\times}34pg$. range of non-labelled $Rg_1$. The cross reaction test using 19 ginsenoside analogues enabled us a full structure-activity analysis on the antigen-antibody reaction that the anti-body in the serum would recognize the full structure of ginsenoside $Rg_1$ except the side chain moiety.

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Platform of Hot Pepper Defense Genomics: Isolation of Pathogen Responsive Genes in Hot Pepper (Capsicum annuum L.) Non-Host Resistance Against Soybean Pustule Pathogen (Xanthomonas axonopodis pv. glycines)

  • Lee, Sang-Hyeob;Park, Do-Il
    • The Plant Pathology Journal
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    • v.20 no.1
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    • pp.46-51
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    • 2004
  • Host resistance is usually parasite-specific and is restricted to a particular pathogen races, and commonly is expressed against specific pathogen genotypes. In contrast, resistance shown by an entire plant species to a species of pathogen is known as non-host resistance. Therefore, non-host resistance is the more common and broad form of disease resistance exhibited by plants. As a first step to understand the mechanism of non-host plant defense, expressed sequence tags (EST) were generated from a hot pepper leaf cDNA library constructed from combined leaves collected at different time points after inoculation with non-host soybean pustule pathogen (Xanthomonas axonopodis pv. Glycines; Xag). To increase gene diversity, ESTs were also generated from cDNA libraries constructed from anthers and flower buds. Among a total of 10,061 ESTs, 8,525 were of sufficient quality to analyze further. Clustering analysis revealed that 55 % of all ESTs (4685) occurred only once. BLASTX analysis revealed that 74% of the ESTs had significant sequence similarity to known proteins present in the NCBI nr database. In addition, 1,265 ESTs were tentatively identified as being full-length cDNAs. Functional classification of the ESTs derived from pathogen-infected pepper leaves revealed that about 25% were disease- or defense-related genes. Furthermore, 323 (7%) ESTs were tentatively identified as being unique to hot pepper. This study represents the first analysis of sequence data from the hot pepper plant species. Although we focused on genes related to the plant defense response, our data will be useful for future comparative studies.

Numerical Modeling of the Hall Sensor Signal Used in Pulsed Eddy Current Testing and Comparison of Its Characteristics with a Coil Sensor Signal (홀센서를 사용한 펄스와전류탐상 신호의 수치모델링 및 코일센서 신호와의 특성 비교)

  • Shin, Young Kil
    • Journal of the Korean Society for Nondestructive Testing
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    • v.36 no.6
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    • pp.490-495
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    • 2016
  • Pulsed eddy current (PEC) testing signals have typically been obtained from the electromotive force induced in a sensor coil. However, an increasing number of studies have elected to incorporate the Hall plate as a sensor. Thus, accurate numerical modeling of the Hall sensor signal is necessary. In this study, a PEC probe is designed and a numerical modeling program is written so that Hall sensor signals and coil sensor signals can be calculated simultaneously. First, a step current is used as the input current. The predicted Hall sensor signals show similar characteristics to those of the experimental signals reported by other researchers. The characteristics of the two types of signals are then analyzed and compared as the thickness of test object changes. The results show that the Hall sensor signal provides less information for evaluating the thickness of the test object than the coil sensor signal. The response signals from a pulsed input current are also calculated, and it is confirmed that an equivalent reversed signal pattern appeared after the pulse width at both signals.

Effects of Cryptospoyidium bnileyi infection on the bursa of Fabricius in chickens (닭에 있어서 닭와포자충 감염이 파브리시우스낭에 미치는 영향)

  • Lee, Jae-Gu;Kim, Hyeon-Cheol;Park, Bae-Geun
    • Parasites, Hosts and Diseases
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    • v.35 no.3
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    • pp.181-188
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    • 1997
  • In order to clarify the effect of cryptosporidiosis on immune response, histopathological changes associated with experimentally occurring bursal cryptosporidiosis in chickens were chronologically observed as the first step. A total of 150 2-day-old chickens was each inoculated orally with a single dose of 5 × 105 Cryptospori,mum bailevi oocysts. The chickens showed a normal profile of oocyst shedding in droppings. The bursa indices throughout the experimental period indicated negligible reactions. Numerous cryptosporidia occurred in the microvillous border of bursal epithelium between days 4 and 16 postinoculation (PI). Appearance of the most mast cells was followed by a dramatic loss of the protozoa in the bursa of Fabricius (BF). The distribution of the coccidium coincided with heterophil infiltration in the epithelium and adjacent lamina propria. The histopathological lesion was marked diffuse chronic superficial purulent bursitis with heterophil infiltration in the epithelium and adjacent lamina proprla and mucosal epithelial hyperplasia. These results suggest that the bursitis may induce immunosuppressive effect.

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Long-term Simulation and Uncertainty Quantification of Water Temperature in Soyanggang Reservoir due to Climate Change (기후변화에 따른 소양호의 수온 장기 모의 및 불확실성 정량화)

  • Yun, Yeojeong;Park, Hyungseok;Chung, Sewoong;Kim, Yongda;Ohn, Ilsang;Lee, Seoro
    • Journal of Korean Society on Water Environment
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    • v.36 no.1
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    • pp.14-28
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    • 2020
  • Future climate change may affect the hydro-thermal and biogeochemical characteristics of dam reservoirs, the most important water resources in Korea. Thus, scientific projection of the impact of climate change on the reservoir environment, factoring uncertainties, is crucial for sustainable water use. The purpose of this study was to predict the future water temperature and stratification structure of the Soyanggang Reservoir in response to a total of 42 scenarios, combining two climate scenarios, seven GCM models, one surface runoff model, and three wind scenarios of hydrodynamic model, and to quantify the uncertainty of each modeling step and scenario. Although there are differences depending on the scenarios, the annual reservoir water temperature tended to rise steadily. In the RCP 4.5 and 8.5 scenarios, the upper water temperature is expected to rise by 0.029 ℃ (±0.012)/year and 0.048 ℃ (±0.014)/year, respectively. These rise rates are correspond to 88.1 % and 85.7 % of the air temperature rise rate. Meanwhile, the lower water temperature is expected to rise by 0.016 ℃ (±0.009)/year and 0.027 ℃ (±0.010)/year, respectively, which is approximately 48.6 % and 46.3 % of the air temperature rise rate. Additionally, as the water temperatures rises, the stratification strength of the reservoir is expected to be stronger, and the number of days when the temperature difference between the upper and lower layers exceeds 5 ℃ increases in the future. As a result of uncertainty quantification, the uncertainty of the GCM models showed the highest contribution with 55.8 %, followed by 30.8 % RCP scenario, and 12.8 % W2 model.

Construction of NCAM-LAMP Precipitation and Soil Moisture Database to Support Landslide Prediction (산사태 예측을 위한 NCAM-LAMP 강수 및 토양수분 DB 구축)

  • So, Yun-Yeong;Lee, Su-Jung;Choi, Sung-Won;Lee, Seung-Jae
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.22 no.3
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    • pp.152-163
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    • 2020
  • The present study introduces a procedure to prepare and manage a high-resolution rainfall and soil moisture (SM) database in the LAMP prediction system, especially for landslide researchers. The procedure also includes converting the data into spatial resolution suitable for their interest regions following proper map projection methods. The LAMP model precipitation and SM data are quantitatively and qualitatively evaluated to identify the model prediction characteristics using the ERA5 reanalysis precipitation and observed 10m depth SM data. A detailed process of converting LAMP Weather Research and Forecasting (WRF) output data for 10m horizontal resolution is described in a step-wise manner, providing technical convenience for users to easily convert NetCDF data from the WRF model into TIF data in ArcGIS. The converted data can be viewed and downloaded via the LAMP website (http://df.ncam.kr/lamp/index.do) of the National Center for AgroMeteorology. The constructed database will contribute to monitoring and prediction of landslide risk prior to landslide response steps and should be data quality controlled by more observation data.

Strongly Coupled Method for 2DOF Flutter Analysis (강성 결합 기법을 통한 2계 자유도 플러터 해석)

  • Ju, Wan-Don;Lee, Gwan-Jung;Lee, Dong-Ho;Lee, Gi-Hak
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.34 no.1
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    • pp.24-31
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    • 2006
  • In the present study, a strongly coupled analysis code is developed for transonic flutter analysis. For aerodynamic analysis, two dimensional Reynolds-Averaged Navier-Stokes equation was used for governing equation, and ε-SST for turbulence model, DP-SGS(Data Parallel Symmetric Gauss Seidel) Algorithm for parallelization algorithm. 2 degree-of-freedom pitch and plunge model was used for structural analysis. To obtain flutter response in the time domain, dual time stepping method was applied to both flow and structure solver. Strongly coupled method was implemented by successive iteration of fluid-structure interaction in pseudo time step. Computed results show flutter speed boundaries and limit cycle oscillation phenomena in addition to typical flutter responses - damped, divergent and neutral responses. It is also found that the accuracy of transonic flutter analysis is strongly dependent on the methodology of fluid-structure interaction as well as on the choice of turbulence model.

Purification of TGF-$\beta$1 from Bovine Colostrum (젖소 초유로부터 TGF-$\beta$1의 정제)

  • 남명수;배형철;김평현;김완섭;고준수
    • Food Science of Animal Resources
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    • v.22 no.4
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    • pp.343-347
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    • 2002
  • Bovine colostrum contains various bio-functional Proteins. Especially, transforming: growth factor-${\beta}$1 (TGF-${\beta}$1) has a function in concerns with immune response. The purpose of this study was to establish the purification Processing of transforming growth factor-${\beta}$1(TGF-${\beta}$1). The highest concentration of TGF-${\beta}$1 was measured within 48 h after parturition in bovine colostrum using ELISA kit. Purification of TGF-${\beta}$1 from whey protein was carried out by the gel filtration, AF-heparin chromatography and AF-heparin rechromatography. After final purification step, TGF-${\beta}$1 with a molecular weight of 25 kD was obtained, and confirmed by silver staining and western blotting. Finally, TGF-${\beta}$1 was identified native form of 25 kD and reducing form of 12.5 kD by reducing agent.