• 제목/요약/키워드: Specimen Collection

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Correlation of Virologic Property and Phylogenetic Analysis of Hantaan Viruses Isolated from Patients and Reservoirs in Korea

  • Jung, Yong-Tae;Lee, Sun-Ryang;Paik, Soon-Young;Kim, Gum-Ryong
    • 대한바이러스학회지
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    • 제28권1호
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    • pp.11-20
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    • 1998
  • Twenty isolates of Hantavirus were isolated from patients and reserovirs from 1988 to 1994 in Korea. Isolation rate was 1.9% (10/538) in patients, 6.2% (5/81) in Apodemus sp., 2.6% (1/38) in Rattus sp. and 0.6% (4/677) in bats. Reciprocal mean IFA titers ranged from 27.5 to 1,024 at the specimen collection. According to the growth rate and reaching peak titier of infectivity, the isolates were grouped as rapid, intermediate, and slow growing groups. All isolates were confirmed as Hantaan type by the nested RT-PCR on the G1 region of the M segment. Comparison of nucleotide sequence (Nt: 2101 - Nt: 2280) of the G2 region revealed that the sequence homology bewteen Hantaan 76/118 virus and the isolates was more than 90%. Several nucleotide positions of the isolates showed high variation. The variation rate of patientisolates was about one-half when compared with that of rodentisolates. On the basis of phylogenetic analysis Hantaan viruses isolated were divided into two genogroups. These results indicate that Hantaan virus is highly dominant serotype in Korea and the virologic property and genogroup are not correlated.

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A report of 22 unrecorded bacterial species in Korea, isolated from the North Han River basin in 2017

  • Joung, Yochan;Park, Miri;Jang, Hye-Jin;Jung, Ilsuk;Cho, Jang-Cheon
    • Journal of Species Research
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    • 제7권3호
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    • pp.193-201
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    • 2018
  • Culturable bacterial diversity was investigated using freshwater and sediment samples collected from the North Han River basin in 2017, as a part of the research program 'Survey of freshwater organisms and specimen collection'. Over a thousand bacterial strains were isolated from the samples and identified based on 16S rRNA gene sequences. Among the bacterial isolates, 22 strains showing higher than 98.7% sequence similarity with validly published bacterial species, but not reported in Korea, were classified as unrecorded species in Korea. The 22 bacterial strains were phylogenetically diverse and assigned to 6 classes, 11 orders, 15 families, and 21 different genera. At the generic level, the unreported species were affiliated with Flavobacterium of the class Flavobacteria, Flexibacter of the class Cytophagia, Blastomonas, Brevundimonas, Elstera, Rhizobium, Roseomonas, Sphingomonas, and Xanthobacter of the class Alphaproteobacteria, Albidiferax, Cupriavidus, Curvibacter, Ferribacterium, Hydrogenophaga, Iodobacter, Limnohabitans, Polaromonas, Undibacterium, and Variovorax of the class Betaproteobacteria, Pseudomonas of the class Gammaproteobacteria, and Arcobacter of the class Epsilonproteobacteria. The unreported bacterial species were further characterized by examining Gram reaction, colonial and cellular morphology, and biochemical properties. The detailed descriptions of 22 strains of the unreported bacterial species are also provided.

한국 유전체 코호트 구축의 전략적 고려사항 (Strategy Considerations in Genome Cohort Construction in Korea)

  • 성주헌;조성일
    • Journal of Preventive Medicine and Public Health
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    • 제40권2호
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    • pp.95-101
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    • 2007
  • Focusing on complex diseases of public health significance, strategic issues regarding the on-going Korean Genome Cohort were reviewed: target size and diseases, measurements, study design issues, and follow-up strategy of the cohort. Considering the epidemiologic characteristics of Korean population as well as strengths and drawbacks of current research environment, we tried to tailor the experience of other existing cohorts into proposals for this Korean study. Currently 100,000 individuals have been participating the new Genome Cohort in Korea. Target size of de novo collection is recommended to be set as between 300,000 to 500,000. This target size would allow acceptable power to detect genetic and environmental factors of moderate effect size and possible interactions between them. Family units and/or special subgroups are recommended to parallel main body of adult individuals to increase the overall efficiency of the study. Given that response rate to the conventional re-contact method may not be satisfactory, successful follow-up is the main key to the achievement of the Korean Genome Cohort. Access to the central database such as National Health Insurance data can provide enormous potential for near-complete case detection. Efforts to build consensus amongst scientists from broad fields and stakeholders are crucial to unleash the centralized database as well as to refine the commitment of this national project.

응급실에서의 채혈로 인한 용혈 및 재채혈 관련요인 (Factors Affecting Hemolysis in Blood Sampling and Repeated Sampling in the Emergency Department)

  • 조명숙;황문숙
    • 임상간호연구
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    • 제17권3호
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    • pp.399-410
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    • 2011
  • Purpose: This study was conducted to investigate the incidence of blood hemolysis and repeated blood sampling and to identify factors contributing to hemolysis and repeated blood sampling in the emergency department. Methods: A cross-sectional descriptive design was used. Participants were the patients who came to emergency department and are required a blood sampling for electrolyte level. All blood samples were collected by emergency department nurses and determined for hemolysis by experienced laboratory technologists. Data were analyzed using $x^2$-test, Fisher's exact test, Mann-Whitney u test and Binary Logistic Regression to determine significant differences. Results: A total of 402 valid samples were collected. Of these, 30 blood samples (7.5%) were found to be hemolyzed and 9 (2.2%) to be recollected. Statistically significant factors affecting on hemolysis and repeated blood sampling included the time of bloods sampling (night), the time of tourniquet application, and too-fast blood draw into the test tube. Conclusion: We recommend that nurses who take the blood sampling to consider the findings of the study and take the related factors into account as they set up the standardized care protocol in order for nursing quality improvement.

Unrecorded species of Korean protozoans discovered through the project of 'Discovery of Korean Indigenous Species' II

  • Kyu-Seok, Chae;Jongwoo, Jung;Won Je, Lee;Gi-Sik, Min
    • Journal of Species Research
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    • 제11권4호
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    • pp.335-342
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    • 2022
  • Through the 'Discovery of Korean Indigenous Species' project hosted by the National Institute of Biological Resources (NIBR), new or unrecorded species of various protozoans inhabiting the Korean Peninsula have been discovered. Samples were collected from marine, freshwater, and soil habitats in South Korea and all species were identified and reviewed by experts working on the respective taxonomic group. This study includes 17 unrecorded Korean protozoan species discovered through this project, which belong to four phyla: Amoebozoa Lühe, 1913, Cercozoa Cavalier-Smith, 1998, Euglenozoa Cavalier-Smith, 1981, and Ciliophora Doflein, 1901. Among them, three families (Rhogostomidae Dumack et al., 2017, Parauronematidae Small and Lynn, 1985, and Cyclidiidae Ehrenberg, 1838) and three genera (Rhogostoma Belar, 1921, Parauronema Thompson, 1967, and Cyclidium Müller, 1773) were reported for the first time in Korea. Unlike the previous paper of 2017, this study provides a comprehensive taxonomic account of each species (e.g., species name, collection site, synonyms, specimen vouchers, diagnoses, and figures). Additionally, all the species were assigned Korean names.

Epidemiological application of the cycle threshold value of RT-PCR for estimating infection period in cases of SARS-CoV-2

  • Soonjong Bae;Jong-Myon Bae
    • Journal of Medicine and Life Science
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    • 제20권3호
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    • pp.107-114
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    • 2023
  • Epidemiological control of coronavirus disease 2019 (COVID-19) is needed to estimate the infection period of confirmed cases and identify potential cases. The present study, targeting confirmed cases for which the time of COVID-19 symptom onset was disclosed, aimed to investigate the relationship between intervals (day) from symptom onset to testing the cycle threshold (CT) values of real-time reverse transcription-polymerase chain reaction. Of the COVID-19 confirmed cases, those for which the date of suspected symptom onset in the epidemiological investigation was specifically disclosed were included in this study. Interval was defined as the number of days from symptom onset (as disclosed by the patient) to specimen collection for testing. A locally weighted regression smoothing (LOWESS) curve was applied, with intervals as explanatory variables and CT values (CTR for RdRp gene and CTE for E gene) as outcome variables. After finding its non-linear relationship, a polynomial regression model was applied to estimate the 95% confidence interval values of CTR and CTE by interval. The application of LOWESS in 331 patients identified a U-shaped curve relationship between the CTR and CTE values according to the number of interval days, and both CTR and CTE satisfied the quadratic model for interval days. Active application of these results to epidemiological investigations would minimize the chance of failing to identify individuals who are in contact with COVID-19 confirmed cases, thereby reducing the potential transmission of the virus to local communities.

한국산 바구미 Sternuchopsis waltoni (딱정벌레목, 바구미과, 참바구미아과, Mecysolobini족)의 보고 (New Record of Sternuchopsis waltoni (Boheman) (Coleoptera, Curculionidae, Molytinae, Mecysolobini) from South Korea)

  • 홍기정;정규진
    • 한국응용곤충학회지
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    • 제62권4호
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    • pp.221-225
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    • 2023
  • Mecysolobini족에 속하는 Sternuchopsis (Sternuchopsis) waltoni (Boheman, 1844) (메꽃통바구미; 신칭) 암컷 1개체를 한반도의 남단인 부산의 가덕도 야산에서 떨어잡기를 통해 채집하였다. 이 바구미가 국내 식물방역법상 검역해충으로 지정되어 있어 침입종 또는 자생종 인지 여부를 판단할 필요가 있으나 현재 작물에 대한 피해가 확인되지 않고 있고, 그 밖의 채집정보도 없어 그 판단은 무리가 있다고 생각된다. 본 연구는 이 바구미에 관한 국내 발생정보를 더 확보하기 위한 정확한 진단정보 및 생태정보를 제공하고자 한다.

구강 세균 채취법에 따른 세균의 다양성과 양 분석을 위한 예비 연구 (Preliminary study on the diversity and quantity analysis of oral bacteria according to the sampling methods)

  • 심선주;김지혜;신혜선
    • 한국치위생학회지
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    • 제24권2호
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    • pp.131-139
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    • 2024
  • Objectives: Oral bacterial samples included subgingival, supragingival, and saliva plaques. As the diversity and number of microorganisms deffer depending on the area of the oral cavity and the method used, an appropriate and reliable collection method is important. The present study investigated oral bacterial sampling methods. Methods: Supragingival dental plaque was collected from the buccal and lingual tooth surfaces of study participants using sterilized cotton swabs. Plaques were collected from the subgingival area using a sterilized curette. Bacterial genomic DNA was extracted using MagNA Pure 96 DNA and Viral NA low-volume kits. Real-time polymerase chain reaction (PCR) was performed using the PowerCheckTM Periodontitis Pathogens Multiplex Real-time PCR kit. Results: Aggregatibacter actinomycetemcomitans, Prevotella intermedia, and Fusobacterium nucleatum of the orange complex were not observed in the subgingival biofilms of all study participants. For Porphyromonas. gingivalis, a significant correlation was observed between supragingival, subgingival, and total tooth surface biofilms. Compared to the supragingival and subgingival biofilmss, total tooth surface biofilm exhibited the highest bacterial count when the inswabbing method was used. Conclusions: Based on these findings, the supragingival swab method is recommended for oral bacterial research.

Johannes Nathanael Lieberkühn (1711-1756): luminary eighteenth century anatomist and his illuminating discovery of intestinal glands

  • Sanjib Kumar Ghosh
    • Anatomy and Cell Biology
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    • 제56권1호
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    • pp.25-31
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    • 2023
  • Johannes Nathanael Lieberkühn was a prodigious anatomist whose meticulous experiments and precise detailing helped in comprehending the microscopic anatomy of digestive system during early part of eighteenth century. Notably, his inventions in the field of microscopy aptly complemented his quest for anatomical knowledge at microscopic level. He designed a reflector (Lieberkühn reflector) which enhanced the amount of focussed light leading to bright illumination of tissue specimen. He invented the solar microscope which provided excellent resolution of minute anatomical details. Lieberkühn discovered the digestive juice secreting tubular glands (glands of Lieberkühn) present at the base of intestinal villi producing epithelial invaginations (crypts of Lieberkühn). He also described the intricate juxtaposition of blood vessels in relation to a single intestinal villi. Moreover, through empirically designed experimental set up, Lieberkühn was able to demonstrate the flow of lymph from intestinal villi to collecting lymphatic vessels. Also, his grandiose collection of laboratory specimens involving vascular anatomy are a testimony of his untiring efforts in academia. His contributions were seminal in comprehending the anatomy of digestive system and paved the way for future revelations. His work unveiled the enormous scope of microanatomy in medical science and catalysed the advent of histological staining methods a century later.

경피적 골생검용 아크릴 바늘의 제작과 유용성 (Development and Usefulness of Acrylic Needle for Percutaneous Bone Biopsy)

  • 김태형;신명진;신지훈;임진오;류지연;오제선;우철웅;남증희
    • 대한방사선기술학회지:방사선기술과학
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    • 제33권1호
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    • pp.25-29
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    • 2010
  • 호박을 대상으로 새로 개발된 골생검용 바늘의 유용성을 평가하고자 본 실험을 하였으며, 골생검용 바늘은 10 mm 직경의 아크릴 재료를 사용하여 내부가공을 달리 하여 3가지 형태로 제작하였다. 임상에서 사용되는 구조와 유사한 구조로 재현하여(Conventional type, Ct) 실험군과 비교하였다. Type a(Ta)는 바늘의 원위부 1cm 부분에 내부가공을 하였고, Type b(Tb)는 원위부로부터 동일 길이까지 점점 가늘게 제작하였고, Type c(Tc)는 내부에 동일 길이로 나사산을 제작하였다. 호박 표면으로부터 10 mm되는 부분까지의 생검 채취를 목적으로 20회를 시행하였으며, 시술 성공률, 채취된 표본의 길이 등을 측정하여 가장 적절한 생검용 바늘의 구조를 평가하고자 하였다. 그 결과 생검술의 성공률은 각각 Ct는 55%, Ta는 80%, Tb는 90%, Tc는 100%이었으며, 생검된 표본의 양은 Ct는 $5.6{\pm}1.1\;mm$, Ta는 $5.9{\pm}0.87\;mm$, Tb는 $3.9{\pm}0.77\;mm$, Tc는 $9.4{\pm}0.54\;mm$이었다. 그룹별 통계적 유 의성은 Ct와 Ta(p = 0.28)를 제외한 모든 그룹에서 통계적 의미를 가졌다(p < 0.05). 따라서 새로 개발된 골생검용 바늘은 생검술에 유용하게 사용될 것으로 사료되며, 그중 내부의 나선 가공이된 Tc형의 바늘이 골 생검에 가장 적절한 구조라 예상된다.