• Korean Journal of Microbiology
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• 제49권1호
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• pp.58-63
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• 2013

A taxonomic study was carried out to assess the phylogenetic characteristics of isolate JJM57 from marine red algae Laurencia sp. collected from intertidal zone in Jeju Island, South Korea. Comparative analysis of 16S rRNA gene sequence shows that this isolate belongs to the genus Oceanisphaera. It shows 98.02% and 97.7% sequence similarity with Oceanisphera litoralis DSM $15406^T$ and Oceanisphera donghaensis KCTC $12522^T$, respectively. Strain JJM57 is a Gram-negative, aerobic, moderately halophilic bacterium able to grow in different NaCl concentration ranges from 0.5 to 8.0% and at varying temperatures from 4 to $37^{\circ}C$. Sharing some of the physiological and biochemical properties with O. litoralis and O. donghaensis, JJM57 strain differs in the utilization of ethanol, proline, and alanine. The G+C contents of the strain JJM57 is 61.94 mol% and it is rich in $C_{16:1}$ ${\omega}7c$ and/or iso-$C_{15:0}$ 2-OH, $C_{16:0}$, and $C_{18:1}$ ${\omega}7c$ fatty acids. The DNA-DNA relatedness data separates the strain JJM57 from other species such as O. litoralis and O. donghaensis. On the basis of these polyphasic evidences, present study proposed that strain JJM57 (=KCTC 22371 =AM983543 =CCUG 60764) represents a novel bacterial species of Oceanisphaera.

• Korean Journal of Plant Taxonomy
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• 제41권1호
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• pp.66-80
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• 2011

This study investigated the environmental factors and conducted a RAPD analysis for a better understanding of the environmental characteristics and regional genetic variation in samples from 18 different areas of Viola diamantiaca. The habitats are mostly located on the slopes of mountains facing north at an altitude ranging from 614 m to 1,462 m above sea level with angles of inclination ranging from 3 degrees to 30 degrees. A total of 268 vascular plant taxa are identified in 35 quadrates of 18 habitats. The importance value of V. diamantiaca is 11.58%, and four highly ranked species, Sasa borealis (5.61%), Meehania urticifolia (5.21%), Ainsliaea acerifolia (3.62%), Pseudostellaria palibiniana (3.60%) are considered to have an affinity with V. diamantiaca in their habitats. The degree of their average species diversity is 1.36, while this metric for their evenness and dominance are 0.89 and 0.07, respectively. The average field capacity of the soil is 25.99%, with organic matter at 17.47%, and the pH is 5.19. The soil texture was confirmed as sandy loam of eleven and loam of seven. The result of the RAPD analysis, among 78 bands amplified with a primer, 64 (84.6%) showed polymorphism. Eighteen populations could be classified into five groups with similarity coefficient values ranging from 0.53 to 0.86. The Mt. Jiri population, which is geographically segregated, shows basal branching within the 18 populations. Five populations, including two in the southern district in Gangwon-do and three in Chungcheongbuk-do, form a distinct clade. Four populations in the central district of Gangwon-do and Mt. Bohyeon in the Gyeongsangbuk-do clade form a sister to the clade containing two populations in Gyeonggi-do and five populations of the northern district in Gangwon-do. The Mt. Gariwang population is placed between the southern district and the central district in the Gangwon-do clades.

• Journal of the Korean Institute of Landscape Architecture
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• 제39권6호
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• pp.98-109
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• 2011

Habitat restoration initiative is an important factor for the on-site preservation of butterflies. A new habitat necessitates the investigation of the ecology of the butterfly, the landscape of the habitat, the work process, and a cost analysis. In this study, these factors were analyzed through1) re-consideration of the secured results from three years of field work, and 2) a habitat area estimation conducted according to the presence or absence of larvae and adults via a Parnassius bremeri Bremer survey. The investigation of the natural habitat, done for both larvae and adult butterflies found in South Korea, suggested that multiple patches with a minimum size exceeding $300m^2$ and with an average size of about $1,600m^2$were required for survival of this butterfly. Therefore, more than five patches should be considered for butterfly habitat and patches should have similarity to the present habitat environment with transplantation plans for diet plants and honeydew plants. In addition, to activate the migration of the butterfly, cutting down trees that are obstacles to migration, minimizing the distance between patches and the addition of a stepping patch are also required. A patch connectivity analysis showed that patches should be located within 300m of neighboring patches, as the migration of the butterfly will fail if it is more than 600m. Additionally, more than $10,000m^2$ for a single patch or a patch network composed more than five patches over $1,600m^2$ in size were recommended, with a total patch size of $8,000m^2$. Additionally, neighboring multiple patch networks are more desirable than a single habitat in the event a cyclic habitat pattern arises. In this study, we suggest a habitat restoration and optimal prerequisites for a butterfly habitat. It is expected that this research will lead to the creation of a good model for the restoration of butterfly species.

• Journal of Environmental Science International
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• 제14권3호
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• pp.279-288
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• 2005

The vascular plant at Korea CC was researched in 95 taxa and Korea CC had the highest number of vascular plants among the ponds of 9 golf courses in the capital region. The number of vascular plants at Eunhwasam CC was 21 taxa which followed as the second most. Most of the vascular plants surveyed consist of a mon-ocotyledon with 1-2 years of life and a dicotyledon as perennial. The ratio between an introduced species of pond vegetation and planting species from Jisan CC is $52.3\%$, which is the highest. The lowest ratio of those is $21.1\%$, which is from Pine Creek Cc. Pine Creek CC has 25 plant communities in total, with 16 semi-natural and natural communities and 9 planting or introduced communities. Pine Creek CC has the most varied plant communities among 9 golf clubs. There are plant communities of semi-natural and natural vegetation from all ponds, and there are 12 aquatic plant communities at disturbance or planting vegetation. We found out that Pine creek CC has more natural communities than disturbance or planting communities compared to other golf clubs, and there is not any natural vegetation at Pristine Valley CC. According to value grade from assessment indicator, the natural aspect of Seseoul CC and Eunhwasam CC are the lowest among 9 golf clubs. Taeyoung CC, Eunhwasam CC, Jisan CC, Seseoul CC are superior in made vegetation among the group in terms of euclidean similarity coefficient on natural aspect and are classified as one group. Korea CC and Pristine Valley CC have distinguished semi-natural vegetation and Midas Valley CC and Pine Creek CC, which have a relatively high natural aspect, are classified as one group. Blue Heron CC is separated from other groups into its own group because it has a high value of scenery in particular. In conclusion, there is a correlation between the natural aspect of a pond and size of vegetation.

• Journal of Mushroom
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• 제2권3호
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• pp.115-126
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• 2004

Somatic hybrids of inter-compatible and inter-incompatible strains were obtained by protoplast fusion. The fusion products between compatible strains, Pleurotus ostreatus and P. florida, formed heterokaryons, while fusants between incompatible strains such as P. cornucopiae + P. florida, P. ostreatus + Ganoderma applanatum, P. florida + Ganoderma lucidum, and P. ostreatus + Flammulina velutipes formed synkaryons that retained genes from both parents. The heterokaryons showed the same level of basidioma development. In contrast, the synkaryons showed unique characteristics including clamp connection formation at mitosis, either partner basidioma development, and abnormal segregation and recombination compared with inter-compatible strains. Synkaryons can be classified into homokaryoyic and heterokaryotic type. A comparison of somatic hybrids with compatible and incompatible strains was made using random amplified polymorphic DNA (RAPD) analysis. The heterokaryons between compatible species showed the same level of variability and contained both parental RAPD bands. In contrast, most of the synkaryons between incompatible species showed similarity to those of either parental bands and non-parental RAPD bands. Synkaryons can be classified into microgenome insertion type and macrogenome insertion type. A tetrapolar mating system was found among monospore isolates in somatic hybrids and wild type P. ostreatus. Homokaryons from each somatic hybrid combination were paired with tester homokaryons of the initial wild type of P. ostreatus. The changed mating types were identified in progenies. The pattern of mating type switching in somatic hybrids depends on compatibility of fusion partner. There are several factors related to the mechanism of clamp connection formation and fruiting body development of synkaryons. Of these,the major factor may be associated with self-fertility and mating type switching such as homokaryotic fruiting of wild type P. ostreatus. This review will discuss these aspects.

• Animal Systematics, Evolution and Diversity
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• 제9권2호
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• pp.151-170
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• 1993

Morphometric, band-pattern and electrophoretic analysis on Cobitis taenia complex were performed to investigate the morphological and genetic differentiation and to clarify their taxonomic status. Intermediate types of band-pattern (C and D type) were more frequently expressed than that of types of C. t. taenia(type A) and C. t. lutheri (type B). Sexual dimorphism of band-pattern was observed not only in C. t. taenia(type A) and C. t. lutheri(type B). Sexual dimorphism of band-pattern was observed not only in C. t. lutheri but also in C. t. taenia and C. t. striata as well. Discriminant function analysis based on 19 morphological characters shows no significant differences among C. taenia complex. The degree of genic variation of C. t. striata was higher ( =1.48, P=31.2%, HD=0.009) than those of C. t. striata was higher( =1.48, P=31.2%, HD=0.082 and HG=0.009) than those of C. t. lutheri ( =1.37, P=2.7%, HD=0.058 and HG=0.065). The average genetic similarities between C. t. lutheri and C. t. taenia-C. t. striata were S=0.62 and S=0.66 respectively and these values indicate that C. t. tanenia has evolved specific level of differentiation. C. t. striata and C. t. lutheri show subspecifc level of close genetic similarity (S=0.82). Based on the divergent time estimate (Nei, 1975) it is assumed that C. t. tanenia was branched off from the other subspecies about two million years before present (MYBP) and C. t. striata and C. t. lutheri were differentiated about 0.6 MYBP. The use of C. sinesis an the scientific name for the Korean C. t. taenia, proposed by Kim and Lee (1988) seems incorrect since they are quite different in the structure of lamina circularis (Vladycov, 1935), the external morphology and distribution (Cheng and Zheng, 1987) and the chromosome number(Yu et al., 1989). Kim and Lee(1988) also argued that C.t. striata and C. t. lutheri should be treated as distinct species but the present study and other reports (Kim and Lee, 1984; Kim and Yang, 1993) do not support it. We conclude that C. t. taenia is a good species and C. t. striata and C. t. lutheri are subspecific status. Their scientific names should be revised in the future.

• Korean Journal of Environmental Biology
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• 제32권4호
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• pp.286-296
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• 2014

In this study, we investigated the macrobenthic community structure and spatiotemporal variations in Uljin Marine Ranching area, East Sea of Korea. Macrobenthos were collected using a modified van Veen grab sampler from April to September 2013. Total number of species sampled was 345 and mean density was 5,797 ind. $m^{-2}$, both of which were dominated by the polychaetes. The most dominant species were Spiophanes bombyx (53.64%), followed by Magelona sp.1 (6.96%), Cadella semitorta (2.73%), Lumbrineris longifolia (2.16%) and Alvenius ojianus (2.08%). Cluster analysis and nMDS ordination analysis based on the Bray-Curtis similarity identified 2 station groups. The group 1 (station 2, 3, 5, 6, 8 and 9) was characterized by high abundance of the polychaetes Magelona sp.1, Lumbrineris longifolia, Scoloplos armiger, Praxillella affinis, Maldane cristata and the bivalve Alvenius ojianus, with fine sediment above 30m water depth. On the other hand, the group 2 (station 1, 4, 7 and 10) was numerically dominated by the polychaete Lumbrineriopsis sp. and the bivalve Cadella semitorta, with coarse sediment below 5m water depth. Collectively, the macrobenthic community structure showed a distinct spatial trend, which seemed to be related to the water depth and sediment composition.

• Korean Journal of Ecology and Environment
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• 제50권1호
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• pp.137-147
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• 2017

The identity of toxin producers remains only hypothesis unless there were identified by strain isolation and analytical confirmation of both the cyanotoxin production and the genetic identity of the monoculture. The purposes of this study were to identify a morphologic and phylogenetic classification in Aphanizomenon flos-aquae strains isolated from the Nakdong River and to investigate the potential ability of the strains to produce toxins such as saxitoxin and cylindrospermopsin using target genes. The 16S rRNA and sxtA, sxtI, cyrA, cyrJ genes were analyzed on two strains (DGUC001, DGUC003) isolated from the Nakdong River. Morphological features of the strains were observed a shape of aggregated trichomes in parallel fascicles which can reach up to macroscopic size and a hyaline terminal cell without aerotope. In addition, the 16S rRNA phylogenetic analyses showed that the strains were identified as the same species with high genetic similarity of 98.4% and grouped within a monospecific andsupported cluster I of Aphanizomenon flos-aquae selected from GenBank of the NCBI. The cyrA and cyrJ genes encoding for the cylindrospermopsin-biosynthesis were not detected in the present study. The sxtA gene was in detected both the two strains, whereas the sxtI gene which had been suggested as a suitable molecular marker to detect saxitoxin-producing cyanobacteria was not found both the strains. Thus, the two strains isolated from Nakdong River were identified as the same species of Aphanizomenon flos-aquae Ralfs ex Bornet et Flahault 1888, the two strains were confirmed as potential non-producing strains of the saxitoxin and cylindrospermopsin.

• Korean Journal of Environment and Ecology
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• 제34권2호
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• pp.121-129
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• 2020

This study investigated the change of benthic macroinvertebrates community due to erosion control dams installed in Wonju, Gangwon by comparing the data before and after a rainy season. It selected a closed-type erosion control dam (boulder stone), an open-type erosion control dam (buttress), and a control area and surveyed two upstream points and two downstream points four times between March and September 2019. The flow velocity mostly increased in the closed-type, open-type, and control areas but decreased in St. 3 after the rainy season. The number of benthic macroinvertebrates species and their populations mostly decreased after the rainy season, and the rate of decrease in the populations in the open-type and control areas were more similar than the closed-type area. Species and populations of the EPT groups mostly decreased after the rainy season. A result of the similarity analysis showed that the closed-type and open-type areas were separated by 38.4% with the control area before the rainy season, but the open-type and control areas were separated by 51.3% with the closed-type area after the rainy season. A result of the principal components analysis (PCA) based on axis 1 showed that the closed-type area had a positive value before and after the rainy season, and the open-type and control areas had a negative value before and after the rainy season. The open-type area was more correlated with the control area than the close type. The analysis of the EPT groups showed the distribution of Ephemeroptera in the closed-type area and Trichoptera in the open-type and control areas. The result of this study shows that the installation of erosion control dam can cause changes in benthic macroinvertebrates community and that the open-type area had a smaller difference community difference from the control area after the rainy season than the closed-type area.

• Journal of the Korean Society of Marine Environment & Safety
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• 제27권4호
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• pp.500-509
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• 2021

This study investigated the characteristics of a macrobenthos community and sediment environment and assessed the health of tidal flats along the west coast of Korea. A survey was conducted from Ganghwa-do to Mokpo, Jeollanam-do in April (spring) and August (summer) 2017, and April (spring) 2018. The sediment grain sizes in the Chungcheongnam-do region were coarser, and the sediment in the Gyeonggi-do·Incheon, Jeollanam-do, and Jeollabuk-do regions were finer. A total of 140 macrobenthic species were collected from this study and using a cluster similarity analysis of the macrobenthos community, they were divided into four groups. Group2 was associated with Manila clam farm stations, and Ruditapes phillipinarum, Nephtys polybranchia and Lumbrineris nipponica were dominant. Group4 included some sites with finer sediment composed relatively, and Eteone longa and Nemertea unid. appeared at a high frequency. From the health assessment of the western tidal flat, the ISEP and BHI indices had a "High status," and the AMBI index had a "Good status." In conclusion, the tidal flats along the west coast of Korea have good ecological health. However, pollution indicator species such as Theora lata and Capitella capitata have appeared in some areas. Therefore, periodic administration and interventions are necessary to prevent deterioration of the tidal flat environment.