• 원예과학기술지
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• 제34권2호
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• pp.324-330
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• 2016

본 연구는 FT-IR 스펙트럼 데이터를 기반한 다변량통계분석을 이용한 대사체 수준에서 아티초크(Cynara cardunculus var. scolymus L.) 품종 구분하였다. FT-IR 스펙트럼 데이터로부터 PCA(principal component analysis), PLS-DA(partial least square discriminant analysis) 그리고 HCA(hierarchical clustering analysis) 분석을 실시하였다. 아티초크 품종들은 1700-1500, 1500-1300, $1100-950cm^{-1}$ 부위에서 대사체의 양적, 질적 패턴 변화가 FT-IR 스펙트럼상에서 나타났다. FT-IR 스펙트럼의 $1700-1500cm^{-1}$ 부위는 주로 Amide I 과 II을 포함하는 아미노산 및 단백질계열의 화합물들의 질적, 양적 정보를 나타내고, $1700-1300cm^{-1}$ 부위는 phosphodiester group을 포함한 핵산 및 인지질의 정보가 반영이 되고, $1100-950cm^{-1}$ 부위는 단당류나 복합 다당류를 포함하는 carbohydrates 계열의 화합물들이 질적, 양적 정보가 반영되는 부위이다. PCA 상에 나타난 10품종의 아티초크들은 품종간에 중첩이 많이 이뤄지는 모습을 나타냈다. 아티초크 10개의 품종 중에서 'Cardoon'과 'Green Globe'가 계통분류학적으로 유연관계가 낮고, 서로간에 대사체 수준의 차이가 뚜렷하게 나타나는 것으로 보아 대사체 수준에서 마커 탐색에 가장 중요한 품종으로 작용할 것으로 판단된다. PLS-DA 분석의 경우 PCA 분석 보다 아티초크의 종간 식별이 뚜렷하게 나타났다. 따라서 본 연구에서 확립된 대사체 수준에서 아티초크의 품종 식별 기술은 품종, 계통의 신속한 선발 수단으로 활용이 가능할 것으로 기대되며 육종을 통한 품종개발 가속화에 기여 할 수 있을 것으로 예상된다.

• 대한원격탐사학회:학술대회논문집
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• 대한원격탐사학회 2003년도 Proceedings of ACRS 2003 ISRS
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• pp.1470-1472
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• 2003

Hyperion, as hyperspectral data, is carried on NASA’s EO-1 satellite, can be used in more subtle discrimination on forest cover, with 224 band in 360 ?2580 nm (10nm interval). In this study, Hyperion image is used to investigate the effects of topography on the classification of forest cover, and to assess whether the topographic correction improves the discrimination of species units for practical forest mapping. A publicly available Digital Elevation Model (DEM), at a scale of 1:25,000, is used to model the radiance variation on forest, considering MSR(Mean Spectral Ratio) on antithesis aspects. Hyperion, as hyperspectral data, is corrected on a pixel-by-pixel basis to normalize the scene to a uniform solar illumination and viewing geometry. As a result, the approach on topographic effect normalization in hyperspectral data can effectively reduce the variation in detected radiance due to changes in forest illumination, progress the classification of forest cover.

• Journal of Microbiology and Biotechnology
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• 제29권6호
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• pp.887-896
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• 2019

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)-based pathogen identification relies on the ribosomal protein spectra provided in the proprietary database. Although these mass spectra can discern various pathogens at species level, the spectra-based method still has limitations in identifying closely-related microbial species. In this study, to overcome the limits of the current MALDI-TOF MS identification method using ribosomal protein spectra, we applied MALDI-TOF MS of low-mass profiling to the identification of two genetically related Bacillus species, the food-borne pathogen Bacillus cereus, and the insect pathogen Bacillus thuringiensis. The mass spectra of small molecules from 17 type strains of two bacilli were compared to the morphological, biochemical, and genetic identification methods of pathogens. The specific mass peaks in the low-mass range (m/z 500-3,000) successfully identified various closely-related strains belonging to these two reference species. The intensity profiles of the MALDI-TOF mass spectra clearly revealed the differences between the two genetically-related species at strain level. We suggest that small molecules with low molecular weight, 714.2 and 906.5 m/z can be potential mass biomarkers used for reliable identification of B. cereus and B. thuringiensis.

• 미생물학회지
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• 제47권3호
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• pp.268-274
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• 2011

남조세균 Anabaena (Cyanobacteria, Nostocales)는 담수 생태계에서 녹조 현상을 유발하거나 일부 종은 간독소(hepatotoxin)를 갖고 있어 수질관리 차원에서 주목 받아 왔다. 본 연구는 Anabaena RNA polymerase beta subunit (rpoB) 유전자 염기서열을 규명하였으며, 분류학적 분자 마커로 사용하기 위하여 이들 염기서열의 특성을 평가하였다. Anabaena rpoB 유전자는 16S rRNA 유전자와 비교하여 염기 유사도가 낮으며 유전자 변이가 큰 것으로 분석되었으며, 통계적으로 유의한 차이를 보였다(Student t-test, p<0.01). Parsimony 분석을 통해 rpoB 유전자가 4.8배의 속도로 빠르게 진화하는 것으로 파악되었다. 또한 rpoB 유전자 phylogeny 분석에서 16S rRNA tree보다 높은 해상도로 Anabaena 균주를 명확하게 구분해 주었다. 본 연구 결과는 Anabaena의 종 식별, 분자계통 분류, 분자적 검출을 위해 rpoB 유전자가 매우 효과적이라는 것을 제시해 준다.

• 한국멀티미디어학회논문지
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• 제23권9호
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• pp.1155-1163
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• 2020

Deep learning approach is emerging as a new way to improve the accuracy of tree species identification using bark image. However, the approach has not been studied enough because it is confronted with the problem of acquiring a large volume of bark image dataset. This study solved this problem by utilizing a pretrained off-the-shelf DCNN model. It compares the discrimination power of bark features extracted by each DCNN model. Then it extracts the features by using a selected DCNN model and feeds them to a multi-layer perceptron (MLP). We found out that the ResNet50 model is effective in extracting bark features and the MLP could be trained well with the features reduced by the principal component analysis. The proposed approach gives accuracy of 99.1% and 98.4% for BarkTex and Trunk12 datasets respectively.

• 미생물학회지
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• 제39권1호
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• pp.40-44
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• 2003

탄저균은 그람양성 아포형성세균으로 탄저를 일으키는 원인균이다. Bacillus cereus그룹에 속하는 22종을 포함하여 Bacillus 속의 29종에서 탄저균을 검증할 수 있는 DNA 마커를 개발하고 이를 이용하여 B. cereus 그룹에서 탄저균만을 구분하였다. 한국산 탄저균 경주로부터 709 bp마커(KHTS)를 확보하였다. KHTS분절로부터 얻어진 internal primer set의 PCR 산물은 B. cereus 그룹의 다른 종으로부터 탄저균만을 구별하였다.

• Journal of Microbiology and Biotechnology
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• 제19권3호
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• pp.265-270
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• 2009

An oligonucleotide array was developed to detect and genotype mollicutes based on the internal transcribed spacer (ITS) sequence. The results of the assay were compared with those of a PCR-RFLP assay. The proposed oligonucleotide array containing 5 genus- and 23 species-specific probes was able to detect Mycoplasma species, including M. penetrans and M. spermatophilum, that were not detected by the PCR-RFLP assay. Therefore, the results demonstrated that the proposed oligonucleotide array was effective for the detection and discrimination of 23 species, including an acholeplasma, 21 mycoplasmas, and a ureaplasma, and showed promise as a countermeasure to ensure that biological products are safe and of good quality.

• 생명과학회지
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• 제13권5호
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• pp.590-595
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• 2003

The objective of this study was to assess of genetic variation within and between pumpkin species including Cucurbita maxima, C. moschata, C. pepo and C. maxima${\times}$C. moschata using RAPD markers. The 16 primers showed the amplification of 136 scorable fragments ranging from about 100 bp to 2300 bp. A total of 94 DNA fragments were polymorphic with an average 5.9 polymorphic bands per primer. A species $(C. maxima\timesC. moschata)$ has the highest number of polymorphic loci. Based on obtained data, UPGMA cluster analysis was conducted. Twenty pumpkin cultivars were classified into three large categories and identified genetic distance of cluster ranging from 0.38 and 1.00. Clustering was in accordance with the division of Curcurbitaceae into four species, C. maxima, C. moschata, C. pepo and C. $C. maxima\timesC. moschata$. Therefore, RAPD method may be essential tool for enabling discrimination of pumpkin cultivars.

• 한국어업기술학회:학술대회논문집
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• 한국어업기술학회 2001년도 춘계 수산관련학회 공동학술대회발표요지집
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• pp.471-472
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• 2001

Recently many studies show that genetic characters can be used to provide unambiguous taxonomic discrimination when morphological characters are not practical for routine identification to species level (Bucklin et al., 1996, 1998; Lindeque et al., 1999). The internal transcribed spacer (ITS) regions of the nuclear ribosomal DNA are also one of appropriate markers for species-level studies because it contains sufficient diversity to address intra- and interspecific phylogenetic relationships in invertebrates (Odorico and Miller,1997; Schizas et al., 1999). (omitted)

• 한국발생생물학회지:발생과생식
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• 제23권4호
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• pp.367-375
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• 2019

Pufferfish (Takifugu spp.) are economically important edible marine fish. Mistakes in pufferfish classification can lead to poisoning; therefore, accurate species identification is critical. In this study, we used the mtDNA cytochrome c oxidase subunit I gene (COI) to design specific primers for six Takifugu species among the 21 domestic or imported pufferfish species legally sold for consumption in Korea. We rapidly and simultaneously identified these pufferfish species using a highly efficient, multiplex polymerase chain reaction (PCR) system with the six species-specific primers. The results showed that species-specific multiplex PCR (multiplex species-specific polymerase chain reaction; MSS-PCR) either specifically amplified PCR products of a unique size or failed. MSS-PCR yielded amplification fragment lengths of 897 bp for Takifugu pardalis, 822 bp for T. porphyreus, 667 bp for T. niphobles, 454 bp for T. poecilonotus, 366 bp for T. rubripes, and 230 bp for T. xanthpterus using the species-specific primers and a control primer (ca. 1,200 bp). We visualized the results using agarose gel electrophoresis to obtain accurate contrasts of the six Takifugu species. MSS-PCR analysis is easily performed and provides identification results within 6 h. This technique is a powerful tool for the discrimination of Takifugu species and will help prevent falsified labeling, protect consumer rights, and reduce the risk of pufferfish poisoning..