• Journal of Climate Change Research
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• v.5 no.3
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• pp.249-256
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• 2014

Permafrost is frozen soil below $0^{\circ}C$ for two or more years. Surface of permafrost is called as active layer that seasonally thaws during the summer. Although the thawing of permafrost may deepen the active layer and consequently increase the microbial activity, the microbial community structure in this habitat has not yet been well described. In this study, we presented bacterial and archaeal diversity in the active layer soil from Resolute, Canada using pyrosequencing analysis. The soil sample was collected from the surface of the marsh covered with moss and Carex. A total of 7,796 bacterial reads for 40 phyla and 245 archaeal reads for 4 phyla were collected, reflecting the high diversity of bacteria. Predominant bacterial groups were Proteobacteria (37.7%) and Bacteroidetes (30.0%) in this study. Major groups in Archaea were Euryarchaeota (51.4%) and Thaumarchaeota (46.1%). Both methane producing archaea and consuming bacteria were detected in this study. Although it might be difficult to characterize microbial community with only one sample, it could be used for the basis of assessing the relative importance of the specific groups with a high resolution on the bacterial and archaeal community in this habitat.

• Mycobiology
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• v.36 no.1
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• pp.40-44
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• 2008

Various bacteria were isolated from the casing layer soil of the culture bed of P. ostreatus and their role in fruiting body induction of the edible mushroom, P. ostreatus, was investigated. Analysis of the bacterial community isolated from the casing layer soil revealed that the composition of genera and number of cultivable bacteria were different for each sterilizing treatment. Bordetella was predominant in the bulk soil whereas Flavobacterium was predominant after sterilization of the casing layer soil. Fluorescent Pseudomonas was predominant in the non-sterilized casing layer soil. Total number of the bacterial genera in the casing layer soil was higher than that in the bulk soil. In particular, an increase in the fluorescent Pseudomonas population was observed in the non-sterilized casing layer accompanied by induction of fruiting body and enhanced mushroom production yield. The results suggested that specific bacterial populations in the casing layer play an important role in the formation of primodia and the development of basidiome in P. ostreatus.

• Korean Journal of Organic Agriculture
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• v.19 no.spc
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• pp.218-221
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• 2011

To improve the soil properties of physical and microbial community rice bran and wood charcoal were applied in the continuously cultivated plastic film house soil. Soil physical properties were improved by application of rice bran and charcoal compared to chemical fertilizer application (control) by 8~14% in bulk density and 5~9% in soil porosity. Changes in the biological ratio indexes of fatty acids in the soils were detected depending on the inputted materials. Especially in application of rice bran including mixture with charcoal, much more fungi and less bacteria were detected and the ratio of fungi to bacteria was increased, suggesting the more organic carbon metabolically active in these treatments. The high ratio of aerobe to anaerobe suggested the better aerobic conditions were in the soil inputted wood charcoal. From these results, it is important and possible to select some materials for the organic pepper cultivation, which may improve the poor condition soil.

• Korean Journal of Soil Science and Fertilizer
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• v.36 no.3
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• pp.127-133
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• 2003

The effect of parent rocks to the soil microbial diversity were investigated in soils developed from granite, limestone and basalt parent rocks. In the soils, microbial populations were positively related to the soil chemicals, such as soil pH with ftuorescent Pseudomonas, and soil EC with actinomycetes, fungi, mesophilic Bacillus and alkaliphilic bacteria. Gram negative bacteria, spore forming Bacillus, were maintained relatively same levels of population between granite, limestone and basalt soils. Among the species of Burkholderia, Pseudomonas and Ralstonia were dominated in the granite soils, Pseudomonas, Burkholderia and Phyllobacterium in the limestone soils, and Burkholderia in the basalt soils.

• Journal of The Korean Society of Grassland and Forage Science
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• v.20 no.2
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• pp.139-146
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• 2000

A trial was carried out to investigate the effect of fermented saw-dust pig manure (FSP) and N fertilizer application on physical, chemical properties and microbial population of soil on Cheju brown volcanic ash pasture during the period from September, 1997 to January, 1999. Average soil N contents during 3 different periods, August and October, 1998, and January, 1999 were 0.39, 0.41 and 0.39% for fertilizer N level 0, 150 and 300kg/ha, respectively. Soil N contents determined in January, 1999, was significantly increased by an increase of fertilizer N. Nitrogen contents in the soil applied with 0, 3, 6 and 12 tons 1 ha of FSP were 0.43, 0.40, 0.38 and 0.38%, respectively, showing decreasing tendency of soil with increasing levels of FSP application. Soil N contents determined in August, 1998 and January, 1999, were significantly decreased by increasing levels of FSP application. Organic matter contents of the soil applied with N 0, 150 and 300 kg/ha was 8.04, 8.37, and 9.08%. Soil organic matters determined on the 1st and 2nd period trended to increase with increasing level of fertilizer N. FSP application significantly decreased organic matter contents of pasture soil, (9.14, 8.79, 8.28 and 7.78% OM in soil applied with FSP 0, 3, 6 and 12 tonlha of FSP), respectively. Soil OM determined in October, 1998, also showed a significant decrease with increasing level of FSP. Soil pH, available phosphorus, exchangeable K, Ca, Mg and Na in soil studied were not influenced by fertilizer N or FSP application during all three periods. N application tended to increase soil bacteria count, ($27.0\;{\times}\;10^4\;cfu/g,\;29.4\;{\times}\;1-^4\;cfu/g$ and $53.6\;10^4\;cfu/g$ in the soil applied with 0, 150 and 300 kg N/ha, respectively). The number of colonies of soil bacteria and fungi determined in June and October, 1998 was not increased remarkably by FSP application, but the number of colonies of bacteria determined in March, 1998 showed a significant increase with increasing level of FSP application. In conclusion, N contents and OM of soil increased with increasing level of N application, but decreased with increasing level of FSP application.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2002.04a
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• pp.319-322
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• 2002

The bacterial transport in soil media was studied. Nonionic surfactants, enhanced the bacterial transports in soil media. The transport rate in soil column was increased by increasing the number of ethylene oxide in polyoxyethylene oxide surfactants. Ionic strength of solution affected the microbial transport characteristics in soil. The hydrophobicity of cell surface was proved that one of important characteristics on the bacterial transport in soil media.

• Korean Journal of Microbiology
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• v.37 no.2
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• pp.114-119
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• 2001

Many isolates from different forest soil layers did not show appreciable growth on full strength of the conventional nutrient broth (NB medium) but grow on its 100-fold dilution (DNB medium). These isolates were divided into four types according to organic nutrient concentration in the growth medium from $1^{-1}\;to\;10^{-4}$dilution of normal NB medium. Oligotrophic bacteria were type II and type IV which grew in $10^{-4}$ dilution of NB (1 mg C/l) medium. Sixty strains were isolated for obligate oligotrophic bacteria. Chemotaxonomic and phylogenetic characteristics of eleven isolates of acetylene-reducing (nitrogen-fixing) oligotrophic bacteria from forest soil were investigated. They showed similar characteristics: the cellular fatty acid mainly consisted of straight-chain unsaturated $C_{18:1}$ (60-84% of total fatty acids). Ubiquinone Q-10 and a high guanine plus-cytosine content(61-64 mol%) were found. Eleven isolates of nitrogen-fixing oligotrophic bacteria were found to be closely related by full 16S rDNA sequence simility and many common taxonomic traits. Analysis of full 16S rDNA sequences of eleven isolates indicated that they were more closely related to Bradyrhizobium (similarity values: 98.1-98.8%), Agromonas, Nitrobacter, and Afipia.

• Journal of Ecology and Environment
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• v.29 no.4
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• pp.399-404
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• 2006

This study was carried out to investigate the population densities, R/S ratios, and identification of heterotrophic bacteria on the rhizosphere soil of halophyte Suaeda japonica found on the western and southern mudflats of Korea. The population densities of aerobic and anaerobic heterotrophic bacteria on the rhizosphere soil of Suaeda japonica were in the range of $1.3\;{\pm}\;0.3\;{\times}\;10^6\;{\sim}\;6.3\;{\pm}\;3.3\;{\times}\;10^7\;and\;2.8\;{\pm}\;1.3\;{\times}\;10^4\;{\sim}\;1.8\;{\pm}\;0.7\;{\times}\;10^7\;cfu\;g^{-1}\;d.\;wt.$, respectively. In case of physiologically specific bacteria, population densities of amylolytic bacteria on the rhizosphere soil of Suaeda japonica were in the range of $4.4\;{\pm}\;0.6\;{\times}\;10^6\;{\sim}\;2.5\;{\pm}\;1.2\;{\times}\;10^7\;cfu\;g^{-1}\;d.\;wt.$, those of cellulolytic bacteria were from $8.5\;{\pm}\;6.0\;{\times}\;10^4\;{\sim}\;2.3\;{\pm}\;1.6\;{\times}\;10^6\;cfu\;g^{-1}\;d.\;wt.$, and those of proteolytic bacteria were from $3.8\;{\pm}\;1.8\;{\times}\;10^5\;{\sim}\;4.2\;{\pm}\;2.9\;{\times}\;10^6\;cfu\;g^{-1}\;d.\;wt.$, respectively. The R/S ratios were ranged from 2.33 to 2.39. Among eleven isolates from the roots of halophyte Suaeda japonica of Goheung bay by using 16S rDNA analysis, five clones were closely related to ${\gamma}-Proteobacteria$ group and six clones were closely related to ${\alpha}-Proteobacteria$ group. Among four isolates from Suncheon bay, two strains were related to ${\gamma}-Proteobacteria$ group and another two were related to Actinobacteria and Bacilli group, respectively.

• Economic and Environmental Geology
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• v.42 no.5
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• pp.457-469
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• 2009

Applicability of bioleaching techniques using a sulfur-oxidizing bacteria, Acidithiobacillus thiooxidans, for remediation of shooting range soil contaminated with toxic heavy metals was investigated. The effects of sulfur concentration, the amount of bacterial inoculum and operation temperature on the efficiency of heavy metal solubilization were examined as well. As sulfur concentration and the amount of bacterial inoculum increased, the solubilization efficiency slightly increased; however, significant decrease of heavy metal extraction was observed with no addition of sulfur or bacterial inoculum. Bacteria solubilized the higher amount of heavy metals at $26^{\circ}C$ than $4^{\circ}C$. Lead showed the highest removal amount from the contaminated soil but the lowest removal efficiency when compared with Zn, Cu and Cr. It was likely due to formation of insoluble $PbSO_{4(s)}$ as precipitate or colloidal suspension. Sequential extraction of the microbially treated soil revealed that the proportion of readily extractable phases of Zn, Cu and Cr increased by bacterial leaching, and thus additional treatment or optimization of operation conditions such as leaching time were required for safe reuse of the soil. Bioleaching appeared to be a useful strategy for remediation of shooting range soil contaminated with heavy metals, and various operating conditions including concentration of sulfur input, inoculum volume of bacteria, and operation temperature exerted significant influence on bioleaching efficiency.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2005.10a
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• pp.172-173
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• 2005