• Title/Summary/Keyword: Similarity Pattern Group

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Analysis of Genetic Relationship Among Collected Cymbidium goeringii Based on RAPD (RAPD를 이용한 춘란 수집종 20 품종의 유연관계 분석)

  • Kim, Tae Bok;Lee, Jin Jae;Song, Young Ju;Choi, Chang Hak;Cheong, Dong Chun;Yu, Young Jin
    • FLOWER RESEARCH JOURNAL
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    • v.19 no.4
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    • pp.225-230
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    • 2011
  • This research was performed for making data-base of cross-breeding between Cymbidium goeringii cultivars. Morphological characteristics were investigated and then genetic relationship was analyzed. Collected 20 Cymbidium goeringii cultivars were clustered into 2 groups. Seven cultivars were clustered into group I, and thirteen cultivars were clustered into group II. Group I doesn't have leaf pattern. Group have leaf pattern. The genetic relationship among collected 20 Cymbidium goeringii cultivars was anaylzed using RAPD with ten 10-mers random primer. Eighty-nine bands were generated by RAPD. Among the rest, three bands were monomorphic and eight-six bands were polymorphic. Overall similarity degree ranged from 0.521 to 0.862. The result of RAPD analysis was clustered into 2 groups, too. Sixteen cultivars were clustered into GroupX, and four cultivars were clustered into GroupY. Result of classification with morphological characteristics and RAPD showed different pattern, but 4 cultivars of GroupY by RAPD analysis were included in groupby morphological characteristics. Crossbreeding combination among low related coltivars in RAPD analysis may get more efficient result.

A Proposed Heuristic Methodology for Searching Reloading Pattern (핵연료 재장전모형의 탐색을 위한 경험적 방법론의 제안)

  • Choi, K.Y.;Yoon, Y.K.
    • Nuclear Engineering and Technology
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    • v.25 no.2
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    • pp.193-203
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    • 1993
  • A new heuristic method for loading pattern search has been developed to overcome short-comings of the algorithmic approach. To reduce the size of vast solution space, general shuffling rules, a regionwise shuffling method, and a pattern grouping method were introduced. The entropy theory was applied to classify possible loading patterns into groups with similarity between them. The pattern search program was implemented with use of the PROLOG language. A two-group nodal code MEDIUM-2D was used for analysis of power distribution in the core. The above mentioned methodology has been tested to show effectiveness in reducing of solution space down to a few hundred pattern groups. Burnable poison rods were then arranged in each pattern group in accordance with burnable poison distribution rules, which led to further reduction of the solution space to several scores of acceptable pattern groups. The method of maximizing cycle length(MCL) and minimizing power-peaking factor(MPF) were applied to search for specific useful loading patterns from the acceptable pattern groups. Thus, several specific loading patterns that have low power-peaking factor and large cycle length were successfully searched from the selected pattern groups.

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A Study on the Quantitative Rehabilitation Extent Evaluation Method Using High-Order Function Waveform Analysis of EMG Signal (근전도 신호의 고차함수분석법을 이용한 정량적 재활정도 평가에 관한 연구)

  • Moon, D.J.;Kim, J.Y.;Noh, S.C.;Choi, H.H.
    • Journal of rehabilitation welfare engineering & assistive technology
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    • v.8 no.4
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    • pp.305-312
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    • 2014
  • In this study, in order to quantitatively confirm walking rehabilitation degree, we analyzed EMG pattern simulated abnormal gait and normal gait by applying a curve fitting. We calculated the suitable high-order function for EMG signal, and classified them into 5 groups by using cluster analysis. Depending on the distance from normal pattern group, we listed the pattern group and then the distribution of each variables were confirmed. The amplitude-decreased pattern was the most similar to the normal pattern, but the reversed pattern showed the lowest similarity. Due to the smaller overlapping range, the distribution of the groups were possible to classify using the value of variable. The standard deviation of each term coefficient was compared to indicate the quantitative rehabilitation extent, and the higher value was confirmed as the pattern is close to the normal pattern. Consequently, the representation of quantitative rehabilitation extent is expected to contribute to the more effective rehabilitation method study.

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Prototype Extraction for the Categorization of Lotus and Crane Patterns Using Qualitative and Quantitative Approaches (질적, 양적 접근방법에 의한 연화문, 사문의 분류원형 추출)

  • 장수경;김재숙
    • Journal of the Korean Society of Clothing and Textiles
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    • v.20 no.6
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    • pp.1016-1026
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    • 1996
  • The purpose of this study was to extract protypes from features and concrete images of Lotus and Crane patterns. A qualitative and a quantitative methods were used. Qualitative informations were obtained from depth Interviews for pattern selection and feature extraction, and quantitative informations from a quail-experiment for pattern caregorization. The subjects were 20 female design students and non-design, students in Teajon. The results were summerized into a similarity metrix which was interpreted by the cluster analysis and the multi-dimensional scling(MDS). The patterns for the study were grouped into 8 clusters. Four dimensions were chosen for the MDS. The location of each pattern was visualized in a 2-dimesional spaces and the location of each cluster in a 3-dimensional spaces. The first dimension, "Lotus" vs "Crane" refired to pattern types, and the second dimension, "realistic" vs "transformable", the transformability. The third dimension, "simple" vs "complex", refired to the degree of simplification, and the forth dimension, "continuous" vs "discontinuous", continuity. The results of the Quantitative analysis could be summerized into 3-level prototype hiararchy In the first level, the patterns were devided clearly into two groups. Lotus and Crane by pattern types. In the second levelk, each group was devided into twosubgroups by continuity. In the third, each subgroup was divided into four subgroups by transformability and the degree of simplification. Four protypes, the final targets of the present study, were extracted from the third level. The are Stylized, Realistic, Decorative, Abstract types.d from the third level. The are Stylized, Realistic, Decorative, Abstract types.

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Measurement of Travel Time Using Sequence Pattern of Vehicles (차종 시퀀스 패턴을 이용한 구간통행시간 계측)

  • Lim, Joong-Seon;Choi, Gyung-Hyun;Oh, Kyu-Sam;Park, Jong-Hun
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.7 no.5
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    • pp.53-63
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    • 2008
  • In this paper, we propose the regional travel time measurement algorithm using the sequence pattern matching to the type of vehicles between the origin of the region and the end of the region, that could be able to overcome the limit of conventional method such as Probe Car Method or AVI Method by License Plate Recognition. This algorithm recognizes the vehicles as a sequence group with a definite length, and measures the regional travel time by searching the sequence of the origin which is the most highly similar to the sequence of the end. According to the assumption of similarity cost function, there are proposed three types of algorithm, and it will be able to estimate the average travel time that is the most adequate to the information providing period by eliminating the abnormal value caused by inflow and outflow of vehicles. In the result of computer simulation by the length of region, the number of passing cars, the length of sequence, and the average maximum error rate are measured within 3.46%, which means that this algorithm is verified for its superior performance.

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Variation of the Germination Responses to Temperature of Plantago asiatica Seed Population along Altitude in Mt. Chiri (지리산에서 고도에 따른 질경이(Plantago asiatica) 개체군의 온도에 대한 발아습성의 변이)

  • Lee, Ho-Joon;Kim, Yong-Ok;Jeon, Jae-Hee;Seong, Mi-Seon;Jang, Il-Do
    • The Korean Journal of Ecology
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    • v.17 no.4
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    • pp.485-499
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    • 1994
  • This study was focused on the effect of the altitude on the geographical variations of germination characteristics in the populations of Plantago asiatica L. distribute in Mt. Chiri. There was a significant difference among the 14 groups in the phenological pattern in relation to altitudes. When the altitude becomes higher, the thermal time which was required for 10 to 80% germination rate showed higher and wider distribution. On the other hand, the germination response of increasing temperature (IT) and secreasing temperature (DT) regime was classified into 3 group. The first group was the spering germination type. This group showed that the IT regime hadhigher germination rate than that of the DT regime, and was distributed in Macheon(300m) and Packmudong (500m). The second was the spring-fall germination type which was distributed in Hadong (900m) and Saemt대 (1100m). This group also showed higher germination rate in the IT regime, but the difference of the germination rate between IT and DT regime was less than that in the first group (the spring type). The third group was the early fall germination type which was found in the Nogodan (1507m), Changetomok (1750m) and Cheonwangbong (1915m). The germination rate of this group showed almost 100% similarity between IT and DT regime. These data suggested that the geographical varations of germination characteristics within species was an important ecological strategy for the survival from severe environmental conditions.

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Evaluation of Genetic Diversity among Persimmon Cultivars (Diospyros kaki Thunb.) Using Microsatellite Markers (초위성 마커를 이용한 감(Diospyros kaki Thunb.)의 유연관계 분석)

  • Hwang, Ji-Hyeon;Park, Yu-Ok;Kim, Sung-Churl;Lee, Yong-Jae;Kang, Jum-Soon;Choi, Young-Whan;Son, Beung-Gu;Park, Young-Hoon
    • Journal of Life Science
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    • v.20 no.4
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    • pp.632-638
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    • 2010
  • The genetic diversity among 48 persimmon (Diospyros kaki Thunb.) accessions, indigenous in Korea and introduced from Japan and China, was evaluated by using simple sequence repeat (SSR) markers. From 20 SSR primer sets, a total of 114 polymorphic markers were detected among 12 pollination-constant non-astringent (PCNA), 13 pollination-variant non-astringent (PVNA), 15 pollination-variant astringent (PVA), and 8 pollination-constant astringent (PCA) cultivars. Analysis of pair-wise genetic similarity coefficient (Nei-Li) and unweighted pair-group method with arithmetic averaging (UPGMA) clustering revealed two main clusters and four subclusters for cluster I. The subclustering pattern was in accordance with the classification of persimmon cultivars based on the nature of astringency loss. Phenetic relationships among the subclusters showed a closer relatedness of the PCNA group with the PVNA group, and the PVA with the PCA group. Genetic similarity co-efficiency was 0.499 on average and the highest (0.954) similarity was observed between 'Cheongdo-Bansi' and 'Haman-Bansi'. The similarity was lowest (0.192) between 'Damopan'and 'Atago'. Identification of each cultivar with the execption of 'Cheongdo-Bansi' and 'Gyeongsan-Bansi' was possible based on the SSR fingerprints, suggesting that these SSR markers are a useful tool for protecting intellectual property on newly developed cultivars.

Multi Trait Selection with Restriction for Cutup Carcass Value in Broiler Chicken: Genetic Relatedness of Lines Involved Based on Randomly Amplified Polymorphic DNA

  • Khosravinia, Heshmatollah;Murthy, H.N.N.;Ramesha, K.P.;Govindaiah, M.G.
    • Asian-Australasian Journal of Animal Sciences
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    • v.18 no.11
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    • pp.1535-1541
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    • 2005
  • Five broiler chicken lines, namely HC, BPB2, CPB2, PB2 and UM1, involving in a selection program and differing in selection intensity and genetic background, were screened for randomly amplified polymorphic DNA (RAPD) polymorphism using 10 selected decamer primers. Nine primers amplified the genomic DNA, generating 200 to 2,500 bp and all detected polymorphism between lines. Out of 74 bands scored using these primers, 34 (50.0%) were found to be polymorphic. The number of polymorphic loci ranged from 3 to 6 with an average of 4.33. Lines differed considerably for within-population genetic similarity estimated by band frequency (WS = 93.55 to 99.25). Between-line genetic similarity estimates based on band sharing as well as on band frequency ranged from 71.35 to 86.45 and from 73.38 to 87.68, respectively. Lines HC and PB2 were the most closely related to the other, while BPB2 and CPB2 appeared to be more distant from each other. The between-line genetic distance based on both band sharing and band frequency revealed the similar trends as for Between-line genetic similarity. Based on BS and BF criteria, BPB2 and CPB2 as well as PB2 and UM1 lines can be merged to launch a new genetic group for further progress in biometrical objectives. A phylogenetic tree, derived using Nei's coefficient of similarity revealed the different pattern of genetic distance between lines.

Morphological and Genetic Diversity of Korean Native and Introduced Safflower Germplasm

  • Shim Kang-Bo;Bae Seok-Bok;Lim Si-Kyu;Suh Duck-Yong
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.4
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    • pp.337-341
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    • 2004
  • Morphological and genetic diversity of thirty nine safflower germplasm were collected and evaluated by Principal Component Analysis (PCA) and Random Amplified Polymorphic DNA (RAPD) method. Stem length and seeding to flowering days of the safflower germplasm showed $26\~117cm\;and\;76\~179$ days of variation respectively. USA originated germplasm showed higher oil content as $39\%$, but that of Japanese showed lower as $26\%$. PCA made three different cluster groups according to some agronomic characteristics of safflower. Korea originated germplasm showed similar cluster group with that of collected from USA in the PCA of stem length. But in the seeding to flowering days, it showed similar cluster pattern with that of collected from Japan rather than USA. In the experiment of RAPD analysis, total five primers showed polymorphism at the several chromosomal loci. Korea, China Japan and South Central Asia originated germplasm were differently classified with USA and South West Asia originated germplasm with lower similarity coefficient value (0.47). Most of Korea originated germplasm were grouped with South Central Asia originated germplasm with higher similarity coefficient value (0.74) conferring similar genetic background between both of them. China and Japan originated germplasm were dendrogramed with Korea originated germplasm at the 0.65 and 0.50 similarity coefficient values respectively. Some common results were expected from both of PCA and RAPD analysis, but lower genetic heritability caused by relative higher portion of environmental variance and environment by genotype interaction at the expression of those of agronomic characteristics made constraint to find any reliable results.

Comparison of Angelica Species Roots Using Taste Sensor and DNA Sequencing Analysis (미각센서와 DNA 염기서열을 이용한 당귀류 비교)

  • Kim, Young Hwa;Choi, Goya;Lee, Hye Won;Lee, Gwan Ho;Chae, Seong Wook;Kim, Yun Hee;Lee, Mi Young
    • The Korea Journal of Herbology
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    • v.27 no.6
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    • pp.37-42
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    • 2012
  • Objectives : Angelica Gigantis Radix is prescribed as the root of different Angelica species on the pharmacopoeia in Korea, Japan and China. Chemical components and their biological activities were also different according to their species. A study for the development of simple method to compare Angelica roots was needed. In order to classify them, the methods such as DNA sequencing analysis and taste sensor were applied to three Angelica species like Angelica gigas, Angelica acutiloba and Angelica sinensis. Methods : PCR amplification of intergenic transcribed spacer (ITS) region was performed using ITS1 and ITS4 primer from nine Angelica roots, and then nucleotide sequence was determined. Taste pattern of samples were measured using the taste-sensing system SA402B equipped with a sensing unit, which consists of artificial lipid membrane sensor probes of anionic bitterness, astringency, saltiness, umami, and cationic bitterness (C00, AE1, CT0, AAE, and AN0, respectively). Results : As a result of comparing the similarity of the ITS region sequences, A. sinensis was discriminated from the others (A. gigas and A. acutiloba). Equally this genetic result, A. gigas and A. acutiloba showed similar taste pattern as compared to A. sinensis. Sourness, bitterness, aftertaste of bitterness, astringency, and aftertaste of astringency of A. sinensis were significantly high as compared with A. gigas and A. acutiloba. In contrast, richness was significantly low. Conclusions : These taste pattern can be used as a way of comparison of Angelica species and this technic could be applied to establish a taste pattern marker for standardization of herbs in various purposes.