• Title/Summary/Keyword: Shannon's diversity index

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Genetic Diversity of Salicornia herbacea according to Habitat Area by ISSR Markers (ISSR 마커를 이용한 서식 면적에 따른 퉁퉁마디의 유전적 다양성)

  • Kim, Suk-Kyu;Cho, Yoon Sik;Hur, Young Baek;Song, Jae Hee;Jeong, Hee Do;Chung, Sang Ok
    • Korean Journal of Environment and Ecology
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    • v.31 no.6
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    • pp.492-499
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    • 2017
  • This study analyzed 96 individuals in 6 populations using ISSR marker to investigate the genetic diversity of Salicornia herbacea populations. The total of 49 PCR amplification bands was observed in 6 ISSR primers, and 30 of them had genetic polymorphisms. The Shannon's information index (I) and gene diversity index (h), which indicate the genetic diversity of the Salicornia herbacea populations, were 0.382 and 0.249, respectively. The genetic diversity according to the population size was lowest with 0.092 (I) and 0.058 (h) in $0.1m{\times}0.1m$ and highest with 0.338 (I) and 0.227 (h) in $25m{\times}25m$, which was suitable for the furtherance of the high population with high genetic diversity. The UPGMA dendrogram based on Nei's genetic distance did not show a significant correlation with the distance between the Salicornia herbacea population. The results indicate that the Salicornia herbacea habiting in the restricted environment should have an area over a certain size to ensure the formation of a population with genetic diversity.

Status, Distribution, Conservation and Use Value of Medicinal and Aromatic Plants (MAPs) in Sagarmatha National Park, Nepal

  • Gaire, Damodar
    • Journal of Forest and Environmental Science
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    • v.30 no.3
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    • pp.253-258
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    • 2014
  • The study attempts to assess the status, distribution, conservation and use value of Medicinal and Aromatic Plant (MAPs) in the Sagarmatha National Park. Altogether 62 species of MAPs belonging to 47 genera and 33 families have been recorded in the study area. 10 species, belonging to 9 families are categorized as the potential species. Out of the these species, most potential in local but threatened species are Allium hypsistum Stearn, Cordyceps sinensis Sacc, Dactylorhiza hatagirea Soo, Nardostachys grandiflora DC, Aconitum orochryseum, Ephedra gerardiana Wall. Ex. Stapf, Swertia multicaulis D. Don, Picrorhiza scrophulariflora Penne, Rheum australe. D. Don, Malva verticillataL and Swertia pedicallata Benerji. By analysis of data using Simpson's diversity index (SI) and Shannon weaver function (H'), there was high diversity (more heterogeneous) MAPs species composition in the Manjo Gate to Large Dobhan. (0.98349). Less diversity (less heterogeneous) MAPs species composition was in Tyanboche to Pangoche (0.90419). Similarly, the Shannon weaver function shows that in plots laying out in Mongla to Phorche are evenly distributed than others However, higher MAPs species (i.e., 31) was found in the way of Manjo Gate to Larja Dobhan than others.

MEASURE OF DEPARTURE FROM QUASI-SYMMETRY AND BRADLEY-TERRY MODELS FOR SQUARE CONTINGENCY TABLES WITH NOMINAL CATEGORIES

  • Kouji Tahata;Nobuko Miyamoto;Sadao Tomizawa
    • Journal of the Korean Statistical Society
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    • v.33 no.1
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    • pp.129-147
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    • 2004
  • For square contingency tables with nominal categories, this paper proposes a measure to represent the degree of departure from the quasi-symmetry (QS) model and the Bradley-Terry (BT) model. The measure proposed is expressed by using the Cressie and Read (1984)'s power-divergence or Patil and Taillie (1982)'s diversity index. The measure lies between 0 and 1, and it is useful for comparing the degree of departure from QS or BT in several tables.

Effects of reforestation approaches, agroforestry and woodlot, on plant community composition, diversity and soil properties in Madhupur Sal forest, Bangladesh

  • Hasan, Mohammad Kamrul;Islam, Md. Tariqul;Akter, Rojina;Roshni, Nasima Akther
    • Journal of Ecology and Environment
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    • v.46 no.3
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    • pp.204-217
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    • 2022
  • Background: Increasing land demands for food production have led to biodiversity loss and land degradation in the Madhupur Sal forest. Reforestation activities such as agroforestry and woodlot plantation support the conservation of diversity, restoration of forest and prevention of soil erosion in degraded natural Sal forest. Knowing about these reforestation activities, this study is needed to compare the species composition, richness, and soil nutrients of these two plantation activities to the natural Sal forest in the degraded Madhupur Sal forest in Bangladesh. Results: The analysis showed that in between the reforestation activities, the highest Shannon-Wiener index (1.79), evenness (0.60) and Simpson's index (0.79) were found in the agroforestry site compared to the woodlot plantation site. On the contrary, the highest species richness (n = 14), tree basal area (19.56 m2 ha-1), Margalef's index (1.96) were recorded in woodlot plantation than in the agroforestry site. We observed that at 0-15 cm depth, soil organic matter (2.39%), total nitrogen (0.14%), available phosphorous (62.67 ㎍ g-1) and exchangeable potassium (0.36 meq/100 g) in agroforestry plots were significantly higher compared to other forest sites. At topsoil (15-30 cm depth), soil organic matter (1.67%) and available phosphorous (21.09 ㎍ g-1) were found to be higher in agroforestry site. Conclusions: Both reforestation approaches improved soil function, although woodlot plantation had the higher species richness. Therefore, plantation activities by the sustainable implementation of these two practices are the best alternative to restore the biodiversity, richness and conserve soil fertility in the Madhupur Sal forest of Bangladesh.

Genetic Variation in the Natural Populations of Korean Stewartia (Stewartia koreana Nakai) Based on I-SSR Analysis (I-SSR 분석에 의한 노각나무 천연집단의 유전변이)

  • Yang Byeung-Hoon;Koo Yeong-Bon;Park Yong-Goo;Han Sang-Don
    • Korean Journal of Plant Resources
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    • v.19 no.1
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    • pp.189-195
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    • 2006
  • We investigated the genetic variation in Stewartia koreana Nakai by examining 61 I-SSR amplicons in 120 individuals distributed among six natural populations in Korea. The overall percentage of polymorphic I-SSR amplicons was 81.9% and mean number of amplicons per I-SSR primer was 12.2. Levels of genetic diversity within 6 populations were similar each other[Shannon's Index $0.358{\sim}0.467$(mean: 0.407)]. The Mt. Obong population had the highest level of genetic diversity and was most distinctive from the other populations. Most variation existed among individuals within population(88.2%). Genetic differentiation among populations(${\phi}_{ST}$) was 0.118. The UPGMA dendrogram based on the genetic distance failed in showing decisive geographic relationships.

Effects of habitat differences on the genetic diversity of Persicaria thunbergii

  • Nam, Bo Eun;Nam, Jong Min;Kim, Jae Geun
    • Journal of Ecology and Environment
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    • v.40 no.2
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    • pp.84-88
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    • 2016
  • To understand the effects of habitat characteristics on the genetic diversity of Persicaria thunbergii, three sites of different environmental conditions in a water system were surveyed. Site A was the closest to the source of the water system, and there was a dam between sites A and B. Site C is located on the lowest downstream in the water system. Vegetation survey of four quadrats at each site was performed, and soil samples were collected for physicochemical analysis. Random amplification of polymorphic DNA (RAPD) analysis of ten P. thunbergii individuals at each site was conducted to calculate population genetic diversity and genetic distance among populations. Soil was sterile sand at site A, whereas loamy soil at sites B and C. A pure stand of P. thunbergii appeared at site A, while other species occurred together (such as Humulus japonicus and Phragmites australis) at sites B (Shannon-Wiener index; $H_B=0.309$) and C ($H_C=0.299$). Similar to the species diversity, genetic diversity (Nei's gene diversity; h) within population of site A ($h_A=0.2381$) was relatively lower than sites B ($h_B=0.2761$) and C ($h_C=0.2618$). However, site C was separated from sites A and B in genetic distance rather than the geographical distance (Nei's genetic distance; A~B, 0.0338; B~C, 0.0685; A~C, 0.0833).

Structure, Alpha and Beta Diversity of Natural Forest Areas in Eco-Zones of Taraba State, Nigeria

  • Dau Henry, Japheth;Bunde Bernard, Meer
    • Journal of Forest and Environmental Science
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    • v.39 no.1
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    • pp.1-12
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    • 2023
  • To understand the health conditions and growth patterns of forest estate for environmental resilience and climate change mitigation, assessment of structure and species diversity is paramount. This study aimed at assessing the structure, alpha, and beta diversities of tree species in three ecological zones in Taraba, Nigeria for management purposes. In recent time, no research has been reported on the structure and beta diversity of the study areas. A systematic sampling design was used for data collection. Five sample plots of 50×50 m were laid in each of the six natural forest areas. The result showed a mean DBH (42.5 cm) and a tree height (15.0 m) from the forests. The forests have a structure of an inverse "J-shape," which is typical of natural forests in the tropics. The southern Guinea savanna zone had the highest mean Shannon-Weiner diversity index (2.8). The least beta diversity index (0.02) was between Baissa and Jen Gininya forest areas. Baissa and Bakin Dutse Protected Forest Areas (PFAs) contained 76.5% of the tree species. There is a high chance of all tree species to be found in these 2 forest areas. Proximity to a location influences how similar two tree species are, according to the least beta diversity index (0.02) recorded. The Federal Government's method of management for the forest, known as Gashaka Gumti National Park, may be responsible for the high beta diversity index in the Montane ecozone. Therefore, it should be strongly encouraged to practice strict oversight of natural areas, as their contributions to reducing climate change in Taraba State, Nigeria, cannot be overstated.

Assessment of the Distribution of the Street Trees of Suwon City for Biodiversity

  • Choi, Sun A;Kim, Shin Won
    • KIEAE Journal
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    • v.14 no.5
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    • pp.49-57
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    • 2014
  • This research is about analysis and evaluation of biodiversity of Suwon's street tree, then understanding the problem of it and finally finding a solution. Because the increasing damage of the street trees by disease and insects, insecticide is applied to prevent further damage. However, this insecticide is found to be cancer genic and causing hygienic threat to civilians. Therefore, by gathering Suwon's internal statistics about Suwon's street tree, the trees are divided into three categories, tall evergreen trees, deciduous trees, shrubs following Frank's 30-20-10 theory(1990). Also, according to species diversity index, the problem of disease and insect is researched in terms of biodiversity, and here we suggests solutions to counter such problems. According to the results, the trees planted in Suwon was found to be 31 families, 43 genus and 58 species. The most used kinds, almost 85% of the whole species, are found to be Rhododendron indicum (L.) Sweet, Buxus koreana Nakai ex Chung & al, Euonymus japonicus Thunb, Ligustrum obtusifolium Siebold & Zucc. Besides these, the rest of 15% of street trees had little variety. Therefore, it is necessary to plant tree variously and equally in terms of biodiversity. If this Frank's 10-20-30 solution is not enough to completely solve coulure problem, then further research will be done on soil properties, and local features for improvement of Suwon street tress.

Relationship between Diversity and Productivity at Ratargul Fresh Water Swamp Forest in Bangladesh

  • Sharmin, Mahmuda;Dey, Sunanda;Chowdhury, Sangita
    • Journal of Forest and Environmental Science
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    • v.32 no.3
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    • pp.291-301
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    • 2016
  • One of the most concerned topics in ecology is the relationship between biodiversity and ecosystem functioning. However, there are few field studies, carried out in forests, although many studies have been done in controlled experiments in grasslands. In this paper, we describe the relationship pattern between three facets of diversity and productivity at Ratargul Fresh Water Swamp Forest (RFWSF) in Bangladesh, which is the only remaining fresh water swamp forest of the country. Sixty sample plots were selected from RFWSF and included six functional traits including leaf area (LA), specific leaf area (SLA), leaf dry matter content (LDMC), tree height, bark thickness and wood density. In analyzing TD, we used Shannon diversity and richness indices, functional diversity was measured by Rao's quadratic entropy (Rao 1982) and Faith's (1992) index was used for phylogenetic diversity (PD). It was found that, TD, FD and PD were positively related with productivity (basal area) due to resource use complementarity but surprisingly the best predictor of tree productivity was FD. The results contribute to the understanding the effects of biodiversity loss and it is essential for conservation decision-making and policy-making of Ratargul Fresh Water Swamp Forest.

Genetic Diversity and Structure of the Korean Rare and Endemic Species, Deutzia pdaniculata Nakai, as Revealed by ISSR Markers (한국 희귀 특산식물 꼬리말발도리 집단의 유전적 다양성 및 구조)

  • Son, Sung-Won;Choi, Kyoung Su;Park, Kyu Tae;Kim, Eun-Hye;Park, Seon Joo
    • Korean Journal of Plant Resources
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    • v.26 no.5
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    • pp.619-627
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    • 2013
  • Deutzia paniculata Nakai is a Korean endemic species that has a very restricted distribution in Gyeongsang-do, South Korea. The genetic diversity and structure of five populations of D. paniculata were investigated using 31 ISSR loci from six primers. The Shannon's index (0.429) and genetic diversity (0.271) were relatively higher than those of other rare plant species in Korea. The Miryang (MY) and Yangsan (YS) populations, which have higher flowering rates than the other populations, showed greater genetic diversity than the other populations. An analysis of the molecular variance (AMOVA) showed that 16% of the total variation could be attributed to differences among the populations, and 84% to the differences within populations, indicating moderate gene flow among adjacent populations. The high genetic diversity and low genetic differentiation in the Deutzia paniculata populations, which have a restricted distribution, is considered to be affected by outcrossing of the mating system and abundant individuals in the populations. These results suggest that ex situ conservation strategies are needed to sustain the current genetic diversity of D. paniculata.