• 한국경영과학회지
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• 제35권3호
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• pp.25-43
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• 2010

We consider a multi-objective balancing and sequencing problem in mixed model assembly lines, which is important for an efficient use of the assembly lines. In this paper, we present a neighborhood symbiotic evolutionary algorithm to simultaneously solve the two problems of balancing and model sequencing under multiple objectives. We aim to find a set of well-distributed solutions close to the true Pareto optimal solutions for decision makers. The proposed algorithm has a two-leveled structure. At Level 1, two populations are operated : One consists of individuals each of which represents a partial solution to the balancing problem and the other consists of individuals for the sequencing problem. Level 2, which is an upper level, works one population whose individuals represent the combined entire solutions to the two problems. The process of Level 1 imitates a neighborhood symbiotic evolution and that of Level 2 simulates an endosymbiotic evolution together with an elitist strategy to promote the capability of solution search. The performance of the proposed algorithm is compared with those of the existing algorithms in convergence, diversity and computation time of nondominated solutions. The experimental results show that the proposed algorithm is superior to the compared algorithms in all the three performance measures.

• Journal of Microbiology and Biotechnology
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• 제16권5호
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• pp.683-688
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• 2006

We have developed a program for generating shotgun data sets from known genome sequences. Generation of synthetic data sets by computer program is a useful alternative to real data to which students and researchers have limited access. Uniformly-distributed-sampling clones that were adopted by previous programs cannot account for the real situation where sampled reads tend to come from particular regions of the target genome. To reflect such situation, a probabilistic model for biased sampling distribution was developed by using an experimental data set derived from a microbial genome project. Among the experimental parameters tested (varied fragment or read lengths, chimerism, and sequencing error), the extent of sequencing error was the most critical factor that hampered sequence assembly. We propose that an optimum sequencing strategy employing different insert lengths and redundancy can be established by performing a variety of simulations.

• 디지털콘텐츠학회 논문지
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• 제10권1호
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• pp.107-113
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• 2009

최근에 와서 ADL(Advanced Distributed Learning) SCORM 2004를 준수하는 e-러닝 콘텐츠를 개발하여 제시함으로써 e-러닝 콘텐츠 간의 상호 호완성과 재사용성을 증대시키고자 하는 여러 노력이 있어 왔다. 진정한 의미의 효과적인 SCORM 2004 콘텐츠를 개발하기 위해서는 콘텐츠 개발자가 교수 설계 단계에서부터 콘텐츠 시퀸싱 전략을 수립해야 한다. 그러나 설계 단계에서 수립된 콘텐츠 시퀀싱 전략을 SCORM 시퀀싱으로 구현하는 단계에서는 SCORM 2004 S&N(Sequencing&Navigation) 이해의 난해함으로 인하여 진입장벽(barrier)이 존재하는 것이 현실이다. 이에 본 연구에서는 SCORM 2004의 활용 및 활성화를 더디게 하는 가장 큰 어려움 중의 하나였던 SCORM 시퀀싱을 효과적으로 적용한 응용 사례와 함께 SCORM 2004 콘텐츠 설계 및 구현 단계를 구체적으로 제시함으로써 사실상 e-러닝 기술 표준으로 인정받고 있는 SCORM 2004의 적용 효과성 및 유용성에 대한 질적 재고를 모색하고자 한다.

• Genomics & Informatics
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• 제6권2호
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• pp.87-90
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• 2008

During the last four years, the pyrosequencing-based 454 platform has rapidly displaced the traditional Sanger sequencing method due to its high throughput and cost effectiveness. Meanwhile, the Sanger sequencing methodology still provides the longest reads, and paired-end sequencing that is based on that chemistry offers an opportunity to ensure accurate assembly results. In this report, we describe an optimized approach for hybrid de novo genome assembly using pyrosequencing data and varying amounts of Sanger-type reads. 454 platform-derived contigs can be used as single non-breakable virtual reads or converted to simpler contigs that consist of editable, overlapping pseudoreads. These modified contigs maintain their integrity at the first jumpstarting assembly stage and are edited by fragmenting and rejoining. Pre-existing assembly software then can be applied for mixed assembly with 454-derived data and Sanger reads. An effective method for identifying genomic differences between reference and sample sequences in whole-genome resequencing procedures also is suggested.

• 상하수도학회지
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• 제20권6호
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• pp.829-836
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• 2006

The reaction rate of denitrification is primarily affected by the utilization of organics that are usually limited in the anoxic period in a sequencing batch reactor. It is necessary to add an extemal carbon source for sufficient denitrification. An adaptive model of state-space based on the extended Kalman filter is applied to manipulate the dosage rate of extemal carbon automatically. Control strategies for denitrification have been studied to improve control performance through simulations. The normal control strategy of the constant set-point results in the overdosage of external carbon and deterioration of water quality. To prevent the overdosage of external carbon, improved control strategies such as the constrained control action, variable set-point, and variable set-point after dissolved oxygen depletion are required. More stable control is obtained through the application of the variable set-point after dissolved oxygen depletion. The converging value of the estimated denitrification coefficient reflects conditions in the reactor.

• Membrane and Water Treatment
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• 제11권1호
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• pp.79-85
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• 2020

A single-stage deammonification with a sequencing batch reactor (SBR) that simultaneous nitritation, anaerobic ammonia oxidation (anammox), and denitrification (SNAD) occur in one reactor has been widely applied for sidestream of wastewater treatment plant. For the stable and well-balanced SNAD, a feeding strategy of influent wastewater is one of the most important operating factors in the single-stage deammonification SBR. In this study, single-stage deammonification SBR (working volume 30L) was operated to treat a high-strength ammonium wastewater (1200 mg NH₄⁺-N/L) with different feeding strategies (single feeding and nine-step feeding) under the condition without COD. Each cycle of the step feeding involved 6 sub-cycles consisted of aerobic and anoxic periods for partial nitritation (PN) and anammox, respectively. Contrary to unstable performance in the single feeding, the step feeding showed better deammonification performance (0.565 kg-N/m³/day). Under the condition with COD, however, the nitrogen removal rate (NRR) decreased to 0.403 kg-N/m³/day when the Nine-step feeding strategies had an additional denitrification period before sub-cycles for PN and anammox. The NRR was recovered to 0.518 kg-N/m³/day by introducing an enhanced multiple-step feeding strategy. The strategy had 50 cycles consisted of feed, denitrification, PN, and anammox, instead of repeated sub-cycles for PN and anammox. The multiple-step feeding strategy without sub-cycle showed the most stable and excellent deammonification performance: high nitrogen removal efficiency (98.6%), COD removal rate (0.131 kg-COD/m³/day), and COD removal efficiency (78.8%). This seemed to be caused by that the elimination of the sub-cycles might reduce COD oxidation during aerobic condition but increase the COD utilization for denitrification period. In addition, among various sensor values, the ORP pattern appeared to be applicable to monitor and control each reaction step for deammonification in the multiple-step feeding strategy without sub-cycle. Further study to optimize the number of multiple-step feeding is still needed but these results show that the multiple-step feeding strategy can contribute to a well-balanced SNAD for deammonification when treating high-strength ammonium wastewater with COD in the single-stage deammonification SBR.

• Korean Circulation Journal
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• 제53권1호
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• pp.1-16
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• 2023

Recently, single cell RNA sequencing (scRNA-seq) technology has enabled the discovery of novel or rare subtypes of cells and their characteristics. This technique has advanced unprecedented biomedical research by enabling the profiling and analysis of the transcriptomes of single cells at high resolution and throughput. Thus, scRNA-seq has contributed to recent advances in cardiovascular research by the generation of cell atlases of heart and blood vessels and the elucidation of mechanisms involved in cardiovascular development and diseases. This review summarizes the overall workflow of the scRNA-seq technique itself and key findings in the cardiovascular development and diseases based on the previous studies. In particular, we focused on how the single-cell sequencing technology can be utilized in clinical field and precision medicine to treat specific diseases.

• 한국수산과학회지
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• 제36권3호
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• pp.247-253
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• 2003

Sequencing Batch Reactor (SBR) was operated under various experimental conditions to improve the efficiency of biological filters used for the treatment of recycled wastewater from aquaculture. This SBR system was operated for removing COD, ammonia and suspended solid that were the major pollutants in aquaculture wastewater. Aerobic and anoxic conditions after FILL mode were applied intermittently for effective removal of nitrogen. SETTLE and DRAW modes were followed by the complete aerobic and anoxic REACT mode. The total volume of the SBR was 75 liter, while the working volume in a cycle was 35 liters. When the final operating strategy of the SBR was FILL/REACT/SETTLE/DRAW of 0.5/10/1/0.5 hr. the removal efficiencies of TCODcr, $NH_{4}^{+}-N,$ and T-N were 94, 98, and $89\%,$ respectively.

• Environmental Engineering Research
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• 제15권1호
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• pp.3-7
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• 2010

To better understand the ecology of tetrade forming organisms (TFOs) floating in a large amount of dairy wastewater treatment plant (WWTP) effluent (sequencing batch reactor [SBR]) during the inefficient phosphorus (P) removal process of an enhanced biological P removal system, the TFOs from the effluent of a full scale WWTP were separated and attempts made to culture the TFOs in presence/absence of oxygen. The intact TFOs only grew aerobically in the form of unicellular short-rods. Furthermore, to identify the intact TFOs and unicellular short-rods the DNAs of both were extracted, analyzed using their denaturing gradient gel electrophoresis (DGGE)-profiles and then sequenced. The TFOs and unicellular short-rods exhibited the same banding pattern in their DGGE-profiles, and those sequencing data resulted in their identification as Acinetobacter sp. The intact TFOs appeared in clumps and packages of tetrade cells, and were identified as Acinetobacter sp., which are known as strict aerobes and efficient P-removers. The thick layer of extracellular polymeric substance surrounding Acinetobacter sp. may inhibit phosphate uptake, and the cell morphology of TFOs might subsequently be connected with their survival strategy under the anaerobic regime of the SBR system.

• 한국동물위생학회지
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• 제46권1호
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• pp.93-106
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• 2023

Emerging and re-emerging zoonotic viruses become critical public health, economic, societal, and cultural burdens. The Coronavirus disease-19 (COVID-19) pandemic reveals needs for effective preparedness and responsiveness against the emergence of variants and the next virus outbreak. The targeted next-generation sequencing (NGS) significantly contributes to the acquisition of viral genome sequences directly from clinical specimens. Using this advanced NGS technology, the genomic epidemiology and surveillance play a critical role in identifying of infectious source and origin, tracking of transmission chains and virus evolution, and characterizing the virulence and developing of vaccines during the outbreak. In this review, we highlight the platforms and preparation of targeted NGS for the viral genomics. We also demonstrate the application of this strategy to take advantage of the responsiveness and prevention of emerging zoonotic viruses. This article provides broad and deep insights into the preparedness and responsiveness for the next zoonotic virus outbreak.