• Title/Summary/Keyword: Self-ensemble

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Molecular Dynamics Simulation Studies of Benzene, Toluene, and p-Xylene in NpT Ensemble: Thermodynamic, Structural, and Dynamic Properties

  • Kim, Ja-Hun;Lee, Song-Hi
    • Bulletin of the Korean Chemical Society
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    • v.23 no.3
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    • pp.447-453
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    • 2002
  • In this paper we have presented the results of thermodynamic, structural, and dynamic properties of model systems for liquid benzene, toluene and p-xylene in an isobaric-isothermal (NpT) ensemble at 283.15, 303.15, 323.15, and 343.15 K using molecular dynamics (MD) simulation. This work is initiated to compensate for our previous canonical (NVT) ensemble MD simulations [Bull. Kor. Chem. Soc. 2001, 23, 441] for the same systems in which the calculated pressures were too low. The calculated pressures in the NpT ensemble MD simulations are close to 1 atm and the volume of each system increases with increasing temperature. The first and second peaks in the center of mass g(r) diminish gradually and the minima increase as usual for the three liquids as the temperature increases. The three peaks of the site-site gC-C(r) at 283.15 K support the perpendicular structure of nearest neighbors in liquid benzene. Two self-diffusion coefficients of liquid benzene via the Einstein equation and via the Green-Kubo relation are in excellent agreement with the experimental measures. The self-diffusion coefficients of liquid toluene and p-xylene are in accord with the trend that the self-diffusion coefficient decreases with increasing number of methyl group. The friction constants calculated from the force auto-correlation (FAC) function with the assumption that the fast random force correlation ends at time which the FAC has the first negative value give a correct qualitative trends: decrease with increase of temperature and increase with the number of methyl group. The friction constants calculated from the FAC's are always less than those obtained from the friction-diffusion relation which reflects that the random FAC decays slower than the total FAC as described by Kubo [Rep. Prog. Phys. 1966, 29, 255].

Molecular Dynamics Simulation Studies of Benzene, Toluene, and p-Xylene in a Canonical Ensemble

  • Kim, Ja-Hun;Lee, Song-Hui
    • Bulletin of the Korean Chemical Society
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    • v.23 no.3
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    • pp.441-446
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    • 2002
  • We have presented the results of thermodynamic, structural and dynamic properties of liquid benzene, toluene, and p-xylene in canonical (NVT) ensemble at 293.15 K by molecular dynamics (MD) simulations. The molecular model adopted for these molecules is a combination of the rigid body treatment for the benzene ring and an atomistically detailed model for the methyl hydrogen atoms. The calculated pressures are too low in the NVT ensemble MD simulations. The various thermodynamic properties reflect that the intermolecular interactions become stronger as the number of methyl group attached into the benzene ring increases. The pronounced nearest neighbor peak in the center of mass g(r) of liquid benzene at 293.15 K, provides the interpretation that nearest neighbors tend to be perpendicular. Two self-diffusion coefficients of liquid benzene at 293.15 K calculated from MSD and VAC function are in excellent agreement with the experimental measures. The self-diffusion coefficients of liquid toluene also agree well with the experimental ones for toluene in benzene and for toluene in cyclohexane.

S2-Net: Machine reading comprehension with SRU-based self-matching networks

  • Park, Cheoneum;Lee, Changki;Hong, Lynn;Hwang, Yigyu;Yoo, Taejoon;Jang, Jaeyong;Hong, Yunki;Bae, Kyung-Hoon;Kim, Hyun-Ki
    • ETRI Journal
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    • v.41 no.3
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    • pp.371-382
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    • 2019
  • Machine reading comprehension is the task of understanding a given context and finding the correct response in that context. A simple recurrent unit (SRU) is a model that solves the vanishing gradient problem in a recurrent neural network (RNN) using a neural gate, such as a gated recurrent unit (GRU) and long short-term memory (LSTM); moreover, it removes the previous hidden state from the input gate to improve the speed compared to GRU and LSTM. A self-matching network, used in R-Net, can have a similar effect to coreference resolution because the self-matching network can obtain context information of a similar meaning by calculating the attention weight for its own RNN sequence. In this paper, we construct a dataset for Korean machine reading comprehension and propose an $S^2-Net$ model that adds a self-matching layer to an encoder RNN using multilayer SRU. The experimental results show that the proposed $S^2-Net$ model has performance of single 68.82% EM and 81.25% F1, and ensemble 70.81% EM, 82.48% F1 in the Korean machine reading comprehension test dataset, and has single 71.30% EM and 80.37% F1 and ensemble 73.29% EM and 81.54% F1 performance in the SQuAD dev dataset.

The DC Characteristics of Submicron MESFEFs (서브미크론 MESFET의 DC 특성)

  • 임행상;손일두;홍순석
    • Electrical & Electronic Materials
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    • v.10 no.10
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    • pp.1000-1004
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    • 1997
  • In this paper the current-voltage characteristics of a submicron GaAs MESFET is simulated by using the self-consistent ensemble Monte Carlo method. The numerical algorithm employed in solving the two-dimensional Poisson equation is the successive over-relaxation(SOR) method. The total number of employed superparticles is about 1000 and the field adjusting time is 10fs. To obtain the steady-state results the simulation is performed for 10ps at each bias condition. The simulation results show the average electron velocity is modified by the gate voltage.

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Incorporating BERT-based NLP and Transformer for An Ensemble Model and its Application to Personal Credit Prediction

  • Sophot Ky;Ju-Hong Lee;Kwangtek Na
    • Smart Media Journal
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    • v.13 no.4
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    • pp.9-15
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    • 2024
  • Tree-based algorithms have been the dominant methods used build a prediction model for tabular data. This also includes personal credit data. However, they are limited to compatibility with categorical and numerical data only, and also do not capture information of the relationship between other features. In this work, we proposed an ensemble model using the Transformer architecture that includes text features and harness the self-attention mechanism to tackle the feature relationships limitation. We describe a text formatter module, that converts the original tabular data into sentence data that is fed into FinBERT along with other text features. Furthermore, we employed FT-Transformer that train with the original tabular data. We evaluate this multi-modal approach with two popular tree-based algorithms known as, Random Forest and Extreme Gradient Boosting, XGBoost and TabTransformer. Our proposed method shows superior Default Recall, F1 score and AUC results across two public data sets. Our results are significant for financial institutions to reduce the risk of financial loss regarding defaulters.

A probabilistic micromechanical framework for self-healing polymers containing microcapsules

  • D.W. Jin;Taegeon Kil;H.K. Lee
    • Smart Structures and Systems
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    • v.32 no.3
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    • pp.167-177
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    • 2023
  • A probabilistic micromechanical framework is proposed to quantify numerically the self-healing capabilities of polymers containing microcapsules. A two-step self-healing process is designed in this study: A probabilistic micromechanical framework based on the ensemble volume-averaging method is derived for the polymers, and a hitting probability model combined with a crack nucleation model is then utilized for encountering microcapsules and microcracks. Using this framework, a series of parametric investigations are performed to examine the influence of various model parameters (e.g., the volume fraction of microcapsules, microcapsule radius, radius ratio of microcracks to microcapsules, microcrack aspect ratio, and scale parameter) on the self-healing capabilities of the polymers. The proposed framework is also implemented into a finite element code to solve the self-healing behavior of tapered double cantilever beam specimens.

Improving the Performance of Deep-Learning-Based Ground-Penetrating Radar Cavity Detection Model using Data Augmentation and Ensemble Techniques (데이터 증강 및 앙상블 기법을 이용한 딥러닝 기반 GPR 공동 탐지 모델 성능 향상 연구)

  • Yonguk Choi;Sangjin Seo;Hangilro Jang;Daeung Yoon
    • Geophysics and Geophysical Exploration
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    • v.26 no.4
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    • pp.211-228
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    • 2023
  • Ground-penetrating radar (GPR) surveys are commonly used to monitor embankments, which is a nondestructive geophysical method. The results of GPR surveys can be complex, depending on the situation, and data processing and interpretation are subject to expert experiences, potentially resulting in false detection. Additionally, this process is time-intensive. Consequently, various studies have been undertaken to detect cavities in GPR survey data using deep learning methods. Deep-learning-based approaches require abundant data for training, but GPR field survey data are often scarce due to cost and other factors constaining field studies. Therefore, in this study, a deep- learning-based model was developed for embankment GPR survey cavity detection using data augmentation strategies. A dataset was constructed by collecting survey data over several years from the same embankment. A you look only once (YOLO) model, commonly used in computer vision for object detection, was employed for this purpose. By comparing and analyzing various strategies, the optimal data augmentation approach was determined. After initial model development, a stepwise process was employed, including box clustering, transfer learning, self-ensemble, and model ensemble techniques, to enhance the final model performance. The model performance was evaluated, with the results demonstrating its effectiveness in detecting cavities in embankment GPR survey data.

Temperature Dependence on Structure and Self-Diffusion of Water: A Molecular Dynamics Simulation Study using SPC/E Model

  • Lee, Song Hi
    • Bulletin of the Korean Chemical Society
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    • v.34 no.12
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    • pp.3800-3804
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    • 2013
  • In this study, molecular dynamics simulations of SPC/E (extended simple point charge) model have been carried out in the canonical NVT ensemble over the range of temperatures 300 to 550 K with and without Ewald summation. The quaternion method was used for the rotational motion of the rigid water molecule. Radial distribution functions $g_{OO}(r)$, $g_{OH}(r)$, and $g_{HH}(r)$ and self-diffusion coefficients D for SPC/E water were determined at 300-550 K and compared to experimental data. The temperature dependence on the structural and diffusion properties of SPC/E water was discussed.

Viscosity and Diffusion Constants Calculation of n-Alkanes by Molecular Dynamics Simulations

  • Lee, Song-Hi;Chang, Tai-Hyun
    • Bulletin of the Korean Chemical Society
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    • v.24 no.11
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    • pp.1590-1598
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    • 2003
  • In this paper we have presented the results for viscosity and self-diffusion constants of model systems for four liquid n-alkanes ($C_{12}, C_{20}, C_{32}, and C_{44}$) in a canonical ensemble at several temperatures using molecular dynamics (MD) simulations. The small chains of these n-alkanes are clearly $<{R_{ee}}^2>/6<{R_g}^2>>1$, which leads to the conclusion that the liquid n-alkanes over the whole temperatures considered are far away from the Rouse regime. Calculated viscosity ${\eta}$ and self-diffusion constants D are comparable with experimental results and the temperature dependence of both ${\eta}$ and D is suitably described by the Arrhenius plot. The behavior of both activation energies, $E_{\eta}$ and $E_D$, with increasing chain length indicates that the activation energies approach asymptotic values as n increases to the higher value, which is experimentally observed. Two calculated monomeric friction constants ${\zeta}$ and ${\zeta}_D$ give a correct qualitative trend: decrease with increasing temperature and increase with increasing chain length n. Comparison of the time auto-correlation functions of the end-to-end vector calculated from the Rouse model for n-dodecane ($C_{12}$) at 273 K and for n-tetratetracontane ($C_{44}$) at 473 K with those extracted directly from our MD simulations confirms that the short chain n-alkanes considered in this study are far away from the Rouse regime.

Diffusion Behavior of n-Alkanes by Molecular Dynamics Simulations

  • Goo, Geun-Hoi;Sung, Gi-Hong;Lee, Song-Hi;Chang, Tai-Hyun
    • Bulletin of the Korean Chemical Society
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    • v.23 no.11
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    • pp.1595-1603
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    • 2002
  • In this paper we have presented the results of diffusion behavior of model systems for eight liquid n-alkanes ($C_{12}$-$C_{44}$) in a canonical (NVT) ensemble at several temperatures using molecular dynamics simulations. For these n-alkanes of small chain length n, the chains are clearly <$R_{ee}^2$>/6<$R_g^2$>>1 and non-Gaussian. This result implies that the liquid n-alkanes over the whole temperatures considered are far away from the Rouse regime, though the ratio becomes close to the unity as n increases. Calculated self-diffusion constants $D_{self}$ are comparable with experimental results and the Arrhenius plot of self-diffusion constants versus inverse temperature shows a different temperature dependence of diffusion on the chain length. The global rotational motion of n-alkanes is examined by characterizing the orientation relaxation of the end-to-end vector and it is found that the ratio ${\tau}1/{\tau}2$ is less than 3, the value expected for a isotropically diffusive rotational process. The friction constants ${\xi}$of the whole molecules of n-alkanes are calculated directly from the force auto-correlation (FAC) functions and compared with the monomeric friction constants ${\xi}_D$ extracted from $D_{self}$. Both the friction constants give a correct qualitative trends: decrease with increasing temperature and increase with increasing chain length. The friction constant calculated from the FAC's decreases very slowly with increasing temperature, while the monomeric friction constant varies rapidly with temperature. By considering the orientation relaxation of local vectors and diffusion of each site, it is found that rotational and translational diffusions of the ends are faster than those of the center.