• Title/Summary/Keyword: Selection Diversity

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Genetic diversity analysis of Thai indigenous chickens based on complete sequences of mitochondrial DNA D-loop region

  • Teinlek, Piyanat;Siripattarapravat, Kannika;Tirawattanawanich, Chanin
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.6
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    • pp.804-811
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    • 2018
  • Objective: Complete mtDNA D-loop sequences of four Thai indigenous chicken varieties, including Pra-dhu-hang-dam (PD), Leung-hang-khao (LK), Chee (CH), and Dang (DA) were explored for genetic diversity and relationships with their potential ancestor and possible associates to address chicken domestication in Thailand. Methods: A total of 220 complete mtDNA D-loop sequences of the four Thai indigenous chicken varieties were obtained by Sanger direct sequencing of polymerase chain reaction amplicons of 1,231 to 1,232 base pair in size. A neighbor-joining dendrogram was constructed with reference complete mtDNA D-loop sequences of Red Junglefowl (RJF) and those different chicken breeds available on National Center for Biotechnology Information database. Genetic diversity indices and neutrality test by Tajima's D test were performed. Genetic differences both within and among populations were estimated using analysis of molecular variance (AMOVA). Pairwise fixation index ($F_{ST}$) was conducted to evaluated genetic relationships between these varieties. Results: Twenty-three identified haplotypes were classified in six haplogroups (A-E and H) with the majority clustered in haplogroup A and B. Each variety was in multiple haplogroups with haplogroups A, B, D, and E being shared by all studied varieties. The averaged haplotype and nucleotide diversities were, respectively 0.8607 and 0.00579 with non-significant Tajima's D values being observed in all populations. Haplogroup distribution was closely related to that of RJF particularly Gallus gallus gallus (G. g. gallus) and G. g. spadiceus. As denoted by AMOVA, the mean diversity was mostly due to within-population variation (90.53%) while between-population variation (9.47%) accounted for much less. By pairwise $F_{ST}$, LK was most closely related to DA ($F_{ST}=0.00879$) while DA was farthest from CH ($F_{ST}=0.24882$). Conclusion: All 4 Thai indigenous chickens are in close relationship with their potential ancestor, the RJF. A contribution of shared, multiple maternal lineages was in the nature of these varieties, which have been domesticated under neutral selection.

Molecular analysis of genetic diversity, population structure, and phylogeny of wild and cultivated tulips (Tulipa L.) by genic microsatellites

  • Pourkhaloee, Ali;Khosh-Khui, Morteza;Arens, Paul;Salehi, Hassan;Razi, Hooman;Niazi, Ali;Afsharifar, Alireza;Tuyl, Jaap van
    • Horticulture, Environment, and Biotechnology : HEB
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    • v.59 no.6
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    • pp.875-888
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    • 2018
  • Tulip (Tulipa L.) is one of the most important ornamental geophytes in the world. Analysis of molecular variability of tulips is of great importance in conservation and parental lines selection in breeding programs. Of the 70 genic microsatellites, 15 highly polymorphic and reproducible markers were used to assess the genetic diversity, structure, and relationships among 280 individuals of 36 wild and cultivated tulip accessions from two countries: Iran and the Netherlands. The mean values of gene diversity and polymorphism information content were 0.69 and 0.66, respectively, which indicated the high discriminatory power of markers. The calculated genetic diversity parameters were found to be the highest in wild T. systola Stapf (Derak region). Bayesian model-based STRU CTU RE analysis detected five gene pools for 36 germplasms which corresponded with morphological observations and traditional classifications. Based on analysis of molecular variance, to conserve wild genetic resources in some geographical locations, sampling should be performed from distant locations to achieve high diversity. The unweighted pair group method with arithmetic mean dendrogram and principal component analysis plot indicated that among wild tulips, T. systola and T. micheliana Hoog exhibited the closest relationships with cultivated tulips. Thus, it can be assumed that wild tulips from Iran and perhaps other Middle East countries played a role in the origin of T. gesneriana, which is likely a tulip species hybrid of unclear origin. In conclusion, due to the high genetic variability of wild tulips, they can be used in tulip breeding programs as a source of useful alleles related to resistance against stresses.

Outage Performance of Cooperative Cognitive Wireless Relay Networks with Delayed CSI (CSI 지연이 있는 상황 인지 무선 협동 릴레이 네트워크의 오수신율)

  • Kim, Nam-Soo
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.46 no.6
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    • pp.19-25
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    • 2009
  • The performance of a cognitive radio system with cooperative diversity which includes the direct and indirect path is analysed. The selection relay cooperation which selects the best relay, the relay with the best received signal-to-noise ratio(SNR) in destination node, is considered and derived the performance degradation caused by the CSI(Channel State Information) delay analytically. Numerical examples show that the cooperative diversity which have the direct and the indirect paths effectively improves the system performance in Rayleigh fading; the performance improves 4.4 dB with 1/10 of SNR of the indirect path. And the system performance is more degraded with the less frequency acquisition probability and with the high CSI delay.

Genetic Diversity and Population Structure of Glehnia littoralis (Umbelliferae) in Korea

  • Huh Man Kyu;Choi Joo Soo;Huh Hong Wook;Choi Yung Hyun;Choi Byung Tae
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.17 no.6
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    • pp.1519-1523
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    • 2003
  • Glehnia littoralis Fr. Schmidt (Umbelliferae) is a short-lived herbaceous species that are mostly distributed throughout East Asia. Although G. littoralis has been regarded as ecologically important one, there is no report on population structure in Korea. Starch gel electrophoresis was used to investigate the allozyme variation and genetic structure of Korean populations of this species. A high level of genetic variation was found in G. littoral is populations. Nine enzymes revealed 18 loci, of which 12 were polymorphic (66.7%). Genetic diversity at the species and population levels were 0.159 and 0.129, respectively. The sexual and asexual reproduction, high fecundity, and colonization process are proposed as possible factors contributing to genetic diversity. An indirect estimate of the number of migrants per generation (Nm = 1.45) indicated that gene flow was not extensive among Korean populations of this species. It is suggested that the ability of vegetation and artificial selection may have played roles in shaping the population structure of this species. we recommend that a desirable conservation population should be included at least 30 plants per population and especially those with high variation.

Random beamforming applying codebook rotation (다중 코드북을 이용한 랜덤 빔 형성 기법)

  • Kang, Ji-Won;Yoo, Byung-Wook;Seo, Jeong-Tae;Lee, Chung-Yong
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.46 no.7
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    • pp.1-5
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    • 2009
  • Random beanforming exploits multiuser diversity gain in static channels. Since the gain is restricted by the user population, some extended works have been proposed. Among them, a codebook-based opportunistic beamforming technique forms multiple random beams with small pilots. The technique however has difficulty in designing beams flexibly by the channel statistics. In this paper, we propose a technique forming the multiple random beams by rotating codebooks. The proposed technique enables the flexible design of beams so that multiuser diversity and beam selection diversity are exploited simultaneously with small pilots robust to the channel statistics.

Integer Frequency Offset Estimation by Pilot Subset Selection for DRM+ Systems with CDD (순환 지연 다이버시티를 갖는 DRM+ 시스템에서 파일럿 집합 선택을 이용한 정수배 주파수 오차 추정 기법)

  • Kwon, Ki-Won;Cho, Yong-Soo
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.36 no.7C
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    • pp.481-487
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    • 2011
  • Cyclic delay diversity (CDD) is a simple transmit diversity technique for an OFDM system using multiple transmit antennas. However, the performance of post-FFT estimation, i.e., integer frequency offset (lFO) is deteriorated by high frequency selectivity introduced by CDD. In this paper, the IFO estimation scheme is proposed for OFDM-based DRM+ system with CDD. Based on the pilot subset partitioning, the proposed IFO estimation scheme reduces the effect of performance degradation caused by frequency selectivity in OFDM systems with CDD . The simulation results show that the performance of the proposed IFO estimator is significantly improved when compared to that of the conventional IFO estimator.

Genetic Variation and Conservation of the Endangered Species Cotoneaster wilsonii (Rosaceae) from Ulleung Island

  • Park, Jiwon;Lee, Junsoo;So, Soonku;Kim, Muyeol
    • Korean Journal of Plant Taxonomy
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    • v.39 no.3
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    • pp.125-129
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    • 2009
  • The genetic diversity plays a significant role in determining a species' survival and perseverance. Endangered species often lack genetic variation, which makes them vulnerable to numerous dangers of extinction including selection, genetic drifts and human interference. Knowing an endangered species' genetic background greatly enhances conservation efforts since it reveals why, what and how to conserve that species. Cotoneaster wilsonii is an endangered plant species endemic to Ulleung island, but not enough genetic research has been done on this taxon for its effective conservation plans. In this study, three populations of C. wilsonii in Ulleung island underwent allozyme analysis through starch gel electrophoresis. 10 loci were analyzed and F-statistics was calculated. Overall data indicated that C. wilsonii possessed low genetic diversity with intense inbreeding, heterozygote deficiency and low differentiation among populations. These results implied that C. wilsonii was recently introduced to the Ulleung island from ancestor species, and did not have much time to differentiate. Current status of C. wilsonii habitats is very fragile and vulnerable, with increasing tourism constantly threatening the species' survival. It is very likely that C. wilsonii will become extinct in near future unless organized conservation protects its populations and genetic diversity.

Assessment of Genetic Diversity and Population Structure on Kenyan Sunflower (Helianthus annus L.) Breeding Lines by SSR Markers

  • Mwangi, Esther W.;Marzougui, Salem;Sung, Jung Suk;Bwalya, Ernest C.;Choi, Yu-Mi;Lee, Myung-Chul
    • Korean Journal of Plant Resources
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    • v.32 no.3
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    • pp.244-253
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    • 2019
  • In crop breeding program, information about genetic dissimilarity on breeding resources is very important to corroborate genealogical relationships and to predict the most heterozygotic hybrid combinations and inbred breeding. This study aimed to evaluate the genetic variation in Kenyan sunflower breeding lines based on simple sequence repeat (SSR). A total of 83 alleles were detected at 32 SSR loci. The allele number per locus ranged from 2 to 7 with an average of 2.7 alleles per locus detected from the 24 sunflower accessions and the average value of polymorphic information contents (PIC) were 0.384. A cluster analysis based on the genetic similarity coefficients was conducted and the 24 sunflower breeding resources were classified into three groups. The principal coordinates (PCoA) revealed 34% and 13.38% respectively, and 47.38% of total variation. It was found that the genetic diversity within the Kenyan sunflower breeding resources was narrower than that in other sunflower germplasm resources, suggesting the importance and feasibility of introducing elite genotypes from different origins for selection of breeding lines with broader genetic base in Kenyan sunflower breeding program.

A Study on the Clothing Modesty of New Generation in 1990s (1990년대 신세대의 의복 정숙성에 관한 연구)

  • 강경자
    • Journal of the Korean Society of Costume
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    • v.51 no.3
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    • pp.141-153
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    • 2001
  • The Purpose of this research is to compare the feminine modesties expressed in the clothes of women's college students in 1980s and 1990s, and to find out the social cause of the change of modesty by reference data. Korean women's college students in 1980s considered feminine modesty very important in the selection of clothes but students in 1990's had quite different attitudes. The major cause of this change may be due to the fact that the traditional conservative values in clothes were diminished in 1990's. The main cause of different values in 1980s and 1990s is the rapid social change of korean society in this Period. The concrete factors of changes were the change of authoritarian aesthetic values and the Positive orientation to diversity individuality sensibility and sexuality.

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DSM Hybrid Technique Using Antenna Array (배열안테나 기반의 DSM 하이브리드 방식)

  • Ryu, Kil-Hyen;Kim, Kwang-Tae
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.47 no.7
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    • pp.80-84
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    • 2010
  • A novel hybrid antenna array system for the code division multiple access (CDMA) using the diversity and beamforming technique has been proposed which is called as a dynamic selection method (DSM). Through the derived outage probability analysis, we have shown that the proposed DSM technique can give benefit over the conventional diversity-only or beamforming-only system.