• Journal of Life Science
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• v.22 no.2
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• pp.266-280
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• 2012

Agar is a cell wall component of macro red algae that can be hydrolyzed by agarase. Agarases are classified into ${\alpha}$-agarase (E.C. 3.2.1.158) and ${\beta}$-agarase (E.C. 3.2.1.81), in accordance with their cleavage pattern, and can be grouped in the glycoside hydrolase (GH)-16, -58, -86, -96, and -118 family according to the amino acid sequences of the proteins. Many agarases and/or their genes have been detected, isolated, and recombinantly expressed from bacteria, and metagenomes have their origins in sea and terrestrial environments. Products of agarases, agarooligosaccharides and neoagarooligosaccharides, represent wide functions such as antitumor, immune stimulation, antioxidation, prebiotic, hepa-protective, antibacterial, whitening, and moisturizing effects; hence, broad applications would be possible in the food industry, cosmetics, and medical fields. In addition, agarases are also used as a tool enzyme for research. This paper reviews the sources, purifications and detection methods, and application fields of agarases. The role of agarases in agar metabolism and the function of their enzymatic products are also surveyed.

• Mycobiology
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• v.48 no.3
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• pp.195-203
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• 2020

Marine yeasts have tremendous potential in industrial applications but have received less attention than terrestrial yeasts and marine filamentous fungi. In this study, we have screened marine yeasts for amylolytic activity and identified an amylase-producing strain PH-Gra1 isolated from sea algae. PH-Gra1 formed as a coral-red colony on yeast-peptone-dextrose (YPD) agar; the maximum radial growth was observed at 22 ℃, pH 6.5 without addition of NaCl to the media. Based on the morphology and phylogenetic analyses derived from sequences of internal transcribed spacer (ITS) and a D1/D2 domain of large subunit of ribosomal DNA, PH-Gra1 was designated Sporidiobolus pararoseus. S. pararoseus is frequently isolated from marine environments and known to produce lipids, carotenoids, and several enzymes. However, its amylolytic activity, particularly the optimum conditions for enzyme activity and stability, has not been previously characterized in detail. The extracellular crude enzyme of PH-Gra1 displayed its maximum amylolytic activity at 55 ℃, pH 6.5, and 0%-3.0% (w/v) NaCl under the tested conditions, and the activity increased with time over the 180-min incubation period. In addition, the crude enzyme hydrolyzed potato starch more actively than corn and wheat starch, and was stable at temperatures ranging from 15 ℃ to 45 ℃ for 2 h. This report provides a basis for additional studies of marine yeasts that will facilitate industrial applications.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.5 no.3
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• pp.233-237
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• 2000

The complete postembryonic development of nauplius stages of Paramphiascella vararensis T. Scotf (Copepoda: Harpacticoida) is described and illustrated based on specimens cultured in laboratory. The nauplii of P. vararensis feed on powder of a green algae, Ulva perusa. This species is metamorphosed to the stages of nauplius. Development from the nauplius stage to the nauplius stage take about 12 days under culture conditions of 33-34 ppt of salinity, 22-23$^{\circ}$C of temperature and feed on the algal powder. In the nauplius stages of P. vararensis, the rudiment of maxillule appeares at the third nauplius stage, and maxilla appeares at the fifth nauplius stage.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.48 no.5
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• pp.768-775
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• 2015

Seasonal variability in the marine seaweed community structure was examined in the intertidal zones at nine study sites in Hallyeohaesang National Park, on the southern coast of Korea from March to October 2014. A total of 145 seaweeds were indentified, comprising 15 green, 41 brown and 89 red algae. Coarsely branched seaweeds were the dominant functional group, comprising 58.95% in species number, whereas filamentous, sheet, thick leathery, crustose and jointed calcareous forms comprised 2.63-17.72% each. The seaweed biomass averaged 358.00 g dry wt/m² and it was maximal at Somaemuldo (847.64 g dry wt/m²) and minimal at Gamam (56.51 g dry wt/m²). Based on biomass, the dominant and subdominant seaweeds were Ulva australis at Gamam, Sargassum thunbergii at Sangju, Ulva australis and S.fulvellum at Neukdo, S.horneri at Dala-Bijindo-Somaemuldo, S. thunbergii at Dapo, and Corallina pilulifera at Songdo. Community indices were as follows: dominance index (DI), 0.43-0.71; richness index (R), 8.26-16.50; evenness index (J'), 0.36-0.54; and diversity index (H'), 1.57-2.19. In conclusion, we found that both biomass and the community structure of seaweeds in Hallyeohaesang National Park were similar to those in other studies of the Southern Sea along the Korean peninsula, and that Hallyeohaesang National Park is a relatively favorable habitat for seaweeds. Future studies should examine the changes in seaweed composition and biomass as they relate to climate change and environmental pollution.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.47 no.5
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• pp.522-526
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• 2014

Pyropia, economic red algae species, have been cultivated in Korea (referred to as 'gim'), Japan ('nori'), and China ('zicai') for over 300 years. Vegetable seaweed Pyropia species are sold in the public markets in various forms as commercial seafoods. In Korea, two kinds of Pyropia seafood made with species of Pyropia and Ulva (sea lettuce, referred to as 'parae') are also sold. These are referred to as 'parae-gim' (with Pyropia spp. and U. linza) and 'gamtaegim' (with Pyropia spp. and U. prolifera). There is currently no method for identifying the seaweed species that comprise Pyropia seafood products. Therefore, we developed novel molecular markers to identify Ulva species in commercial Pyropia seafoods. Based on rbcL molecular markers, we identified informative characteristics to discriminate U. linza and U. prolifera as seafood ingredients. Moreover, PCR with 3'-end mismatch primers successfully isolated the specific rbcL sequences of U. linza and U. prolifera from Pyropia seafoods. Therefore, our novel molecular markers will be useful for identifying the ingredient species of commercial seafoods.

• Microbiology and Biotechnology Letters
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• v.45 no.3
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• pp.243-249
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• 2017

An agar-degrading bacterium, designated as the GNUM08123 strain, was isolated from samples of red algae collected from the Yongil Bay near East Sea, Korea. The isolated GNUM08123 strain was gram-negative, aerobic, motile, and beige-pigmented, with $C_{16:0}$ (25.9%) and summed feature 3 (comprising $C_{16:1}{\omega}7c/iso-C_{15:0}2-OH$, 34.4%) as its major cellular fatty acids. A similarity search based on the 16S rRNA gene sequence revealed that it belonged to class Gammaproteobacteria and shared 97.7% similarity with the type strain Vibrio chagasii $R-3712^T$. The DNA G+C content of strain $GNUM08123^T$ was 46.9 mol%. The major isoprenoid quinone was ubiquinone-8. The results of DNA-DNA relatedness and 16S rRNA sequence similarity analyses, in addition to its phenotypic and chemotaxonomic characteristics, suggest that strain GNUM08123 is a novel species within genus Vibrio, designated as Vibrio sp. GNUM08123. Agarase production by strain GNUM08123 was induced by agar and sucrose, but was repressed probably owing to carbon catabolite repression by glucose and maltose.

• Ocean and Polar Research
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• v.35 no.4
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• pp.415-425
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• 2013

In order to understand phytoplankton and bacterial distribution in tropical coral reef ecosystems in relation to the mangrove community, their biomass and activities were measured in the sea waters of the Chuuk and the Kosrae lagoons located in Micronesia. Chlorophyll a and bacterial abundance showed maximal values in the seawater near the mangrove forests, and then steeply decreased as the distance increased from the mangrove forests, indicating that environmental conditions for these microorganisms changed greatly in lagoon waters. Together with chlorophyll a, abundance of Synechococcus and phototrophic picoeukaryotes and a variety of indicator pigments for dinoflagellates, diatoms, green algae and cryptophytes also showed similar spatial distribution patterns, suggesting that phytoplankton assemblages respond to the environmental gradient by changing community compositions. In addition, primary production and bacterial production were also highest in the bay surrounded by mangrove forest and lowest outside of the lagoon. These results suggest that mangrove waters play an important role in energy production and nutrient cycling in tropical coasts, undoubtedly receiving large inputs of organic matter from shore vegetation such as mangroves. However, the steep decrease of biomass and production of phytoplankton and heterotrophic bacteria within a short distance from the bay to the level of oligotrophic waters indicates that the effect of mangrove waters does not extend far away.

• Journal of Species Research
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• v.7 no.2
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• pp.104-113
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• 2018

In order to investigate indigenous prokaryotic species diversity in Korea, various environmental samples from diverse ecosystems were examined. Isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibiting at least 98.7% sequence similarity with known bacterial species, but not reported in Korea, were selected as unrecorded species. 28 unrecorded bacterial species belonging to the phylum Bacteroidetes were discovered from various habitats including wastewater, freshwater, freshwater sediment, wet land, reclaimed land, plant root, bird feces, seawater, sea sand, tidal flat sediment, a scallop, marine algae, and seaweed. The unrecorded species were assigned to 18 different genera in five families: Flavobacterium, Epilithonimonas, Dokdonia, Gillisia, Flavicella, Chryseobacterium, Algibacter, Aquimarina, Lacinutrix, Gaetbulibacter, Cellulophaga, Tenacibaculum, and Maribacter of Flavobacteriaceae, Dyadobacter of Cytophagaceae, Draconibacterium of Draconibacterium_f, Sunxiuqinia of Prolixibacteraceae, and Fulvivirga of Fulvivirga_f. The selected isolates were subjected to further taxonomic characterization including analysis of Gram reaction, cellular and colonial morphology, biochemical activities, and phylogenetic trees. Descriptive information of the 28 unrecorded species is provided.

• Journal of Species Research
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• v.7 no.1
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• pp.50-59
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• 2018

During the course of investigation of indigenous prokaryotic species in Korea, a total of 30 bacterial strains belonging to the phylum Firmicutes were isolated from diverse environmental sites such as soil, avian feces, wastewater treatment plants, fermented vegetables, seawater, algae, sea cucumber, octopus and tidal flat sediment. Phylogenetic analysis based on 16S rRNA gene sequences revealed that each strain showed high sequence similarity (${\geq}98.7%$) to the closest type strain and formed a robust phylogenetic clade with the most closely related species in the phylum Firmicutes. To date, there is no official record of these 30 species in Korea. Therefore, we report 26 species of 12 genera in the order Bacillales and 4 species of 4 genera in the order Lactobacillales which have not been reported in Korea. Morphological and biochemical characteristics, isolation sources and NIBR deposit numbers are described in the species descriptions.

• Fisheries and Aquatic Sciences
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• v.14 no.4
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• pp.389-397
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• 2011

The benthic algal community structures of the seaweed biomass, vertical distribution of dominant seaweeds, and species composition were examined on the rocky shores of Ongdo, Jusamdo, and Woejodo Islands, Korea, in August 2006. A total of 68 seaweeds were identified, comprising 5 green, 11 brown, and 52 red algae from the three study sites. The number of species at Ongdo (32 species) was less than that at Jusamdo (45 species) and Woejodo (44 species). Jusamdo exhibited the maximum seaweed biomass (73.99 g dry $wt/m^2$), while the minimum value was found at Woejodo (36.90 g dry $wt/m^2$). On the three islands, coarsely branched forms were the most dominant functional group in terms of species number and biomass among benthic algal species. The dominant species were Gelidium amansii, Chondrus ocellatus, and Chrysymenia wrightii at Ongdo, Sargasum thunbergii, Ulva pertusa, and Sargassum fusiformis at Jusamdo, and U. pertusa, Undaria pinnatifida, and Corallina pilulifera at Woejodo. Perennial seaweeds were abundant at Ongdo (G. amansii and C. ocellatus) and Jusamdo (S. thunbergii and S. fusiformis), whereas the sheet form of U. pertusa was relatively abundant at Woejodo Island.