• 한국미생물·생명공학회지
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• 제44권4호
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• pp.563-570
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• 2016

S. griseus wild type에서 dasA 유전자의 과발현에 의해 유도된 기저균사의 ectopic sporulation 관련 유전자를 알아보기 위해서, empty vector가 삽입된 균주와 dasA가 과발현된 균주의 전사체를 DNA microarray법으로 비교하였다. DNA microarray 결과를 토대로 dasA 유전자 과발현 균주에서 2배이상 발현량이 증가되었으며 p-value가 0.05 미만(p-value < 0.05)인 유전자들 중에서 false positive 를 제외시키는 작업을 통하여 최종적으로 4개의 유전자(SGR794, SGR2469, SGR3656, SGR3657)와 3개의 cluster (SGR795-797, SGR2377-2378, SGR6997-6998)를 선발하였다. 이들의 전사량은 low resolution Sl nuclease mapping 법을 통하여 dasA 유전자 과발현 균주에서 증가된 것을 확인하였다.

• Journal of Microbiology and Biotechnology
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• 제1권4호
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• pp.256-260
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• 1991

In B. subtilis, $\alpha$-amylase synthesis is regulated by amyR located directly on the upstream of amyE. Three different amyR alleles have been reported, amyR1, amyR2 and amyR3. Strains bearing the gra-10 mutation which confers derepression for catabolite repression has GlongrightarrowA transition mutation at ＋5 of amyR1. S1 nuclease mapping demonstrated that transcription initiated at 8 bases downstream from the -10 region of putative E$\sigma^{A}$ promoter P1 in amyR1 and gra-10. In amyR2, the major transcription initiatd at the same place and the minor, 10 bases downstream from -10 of P2. The transcript from P2 contributed approximately 15-20% of total amyE mRNA. S1 nuclease protection experiment indicated that amyE mRNA levels corresponded to the rate of synthesis assumed by specific activities of $\alpha$-amylase in culture supernatants, suggesting that $\alpha$-amylase synthesis is regulated at the level of transcription.n.

• Journal of Microbiology and Biotechnology
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• 제25권8호
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• pp.1241-1245
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• 2015

The aim of the present work was to examine the putative promoter region of the operon ansPAB and to determine the general elements required for the regulation of transcriptional activity. The transcriptional start site of the ansPAB promoter was determined by using highresolution S1-nuclease mapping. Sequence analysis of this region showed -10 and -35 elements, which were consistent with consensus sequences for R. etli promoters that are recognized by the major form of RNA polymerase containing the σ⁷⁰ transcription factor. Mutation studies affecting several regions located upstream of the transcriptional start site confirmed the importance of these elements on transcriptional expression.

• Journal of Microbiology and Biotechnology
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• 제3권4호
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• pp.224-231
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• 1993

The nucleotide sequence of the xylanase gene (xynY) from alkalophilic Bacillus sp. YC-335 was determined and analyzed. An open reading frame of 1, 062 base pairs for xynY gene was observed and encoded for a protein of 354 amino acids with a molecular weight of 38, 915. S1 nuclease mapping showed that the transcription initiation sites of the xynY gene were different in Bacillus sp. YC-335 and Escherichia coli HB101 (pYS55). S1 mapping also showed that -10 region of the xynY gene recognized by RNA polymerases of E. coli and Bacillus sp. YC-335 were TACAGT and TATGAT , respectively. A ribosome binding site sequence with the free energy of -17.0 Kcal/mol was observed 9 base pairs upstream from the unusual initiation codon, TTG. The proposed signal sequence consisted of 27 amino acids, 2 of which were basic amino acid residues and 21 were hydrophobic amino acid residues. When the amino acid sequences of xylanases were compared, Bacillus sp. YC-335 xylanase showed more than 50% homology with xylanases from B. pumilus, B. subtilis, and B. circulans.

• 미생물학회지
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• 제36권1호
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• pp.1-7
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• 2000

발광 박테리아인 Photobacterium 종들의 lux 오페론 하부 영역에서 riboflavin 생합성에 관여하는 유전자들(ribⅠ,Ⅱ,Ⅲ,Ⅳ)이 발견되었다. Photobacterium phosphoreum의 lux 유전자와 rib 유전자를 포함하는 intergenic 영역의 단일사슬 DNA가 P. phosphoreum의 mRNA에 의하여 S1 nuclease digestion에서 손상받지 않았으며, ribⅠ에 의하여 암호화되는 P. phosphoreum의 riboflavin synthase의 활성도가 lux-specific한 효소들인 luciferase 혹은 fatty acid reductase 활성도와 같이 bioluminescence intensity의 발현과 함께 대수기 말기에서 증가하는 박테리아 발광반응의 특이한 조절 체계인 'autoinduction' 양상을 보였다. 또한 P. leiognathi의 luxB로부터 ribⅡ까지 포함하는 DNA를 강력한 lux 프로모터와 reporter(chloramphenicol acetyl transferase, CAT) 유전자 사이에 삽입하고 접합(conjugation)의 방법으로 P. leiognathi에 유전자 전이(gene transfer)시켜 CAT reporter 유전자의 발현을 P. leiognathi에서 조사한 바, 그 유전자의 발현 정도에 큰 차이가 없었을 뿐만 아니라 이 구조에서 lux 프로모터를 제거하게 되면 CAT reporter 유전자의 발현이 전혀 나타나지 않았다. 이들 실험 결과들은 lux 유전자와 rib 유전자의 intergenic영역에 lux 오페론의 전사 종결 구조(transcriptional terminator)가 존재하지 않으며 ribflavin 생합성 유전자들이 그들 고유의 프로모터에 의하여 전사되는 것이 아니라 lux 오페론의 프로모터에 의하여 발현됨을 나타내는 것으로, 이는 Photobacterium 종들에서 lux 유전자와 rib 유전자들은 공동의 발현 조절 체계를 갖는 것으로 요약된다.

• Journal of Microbiology and Biotechnology
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• 제3권3호
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• pp.139-145
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• 1993

The nucleotide sequence of the xylanase gene (xynS) from alkali-tolerant Bacillus sp. YA.14 was determined and analyzed. A 639 base pairs open reading frame for xynS gene was observed and encoded for a protein of 213 amino acids with a molecular weight of 23, 339. S1 nuclease mapping showed that the transcription initiation site of the xynS gene did not exist in the cloned DNA. Ribosome binding site sequence with the free energy of -18.8 Kcal/mol was observed 8 base pairs upstream from the initiation codon, ATG. The proposed signal sequence consisted of 28 amino acids, of which 3 were basic amino acid residues and 21 were hydrophobic amino acid residues. When the amino acid sequences of xylanases were compared, Bacillus sp. YA-14 xylanase showed 48% homology with Bacillus sp. YC-335 xylanase and 96% homology with xylanases from B. subtilis and B. circulans.

• Journal of Microbiology
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• 제34권1호
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• pp.15-22
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• 1996

The cloned X-bacterial gene (groEx) which is analogous to groE of E. Coli strongly expressed in E. coli when grown at the temperature 27.deg. C or higher without having to add any inducers. By S1-nuclease mapping, primer extension analysis and site directed mutagenesis, we found 4 promoters in the gene. Among them two promoters located at 5'-extended region of the gene are homologous to the promoters found in groE family of heat-shock genes ; they are , .sigma.$^{32}$ factor-dependent P1 promotor and .delta$^{70}$factor-dependet P2 promoter. The other two promoters found within the coding region of groESx were P3, 5'-TTGGCG-(18 bases)-AATACT-3' and P4, 5'-TTGGCA-(19 bases)-TAAGT which overlapped within 49 bases. These unique intragenic .delta.$^{70}$-dependent promoters are the first to be cloned and characterized in groE analogous heat-shock genes so far. These P3 and P4 promoters appeared to be responsible for the strong expression of GroElx in X-bacteria in vivo.

• 한국미생물생명공학회:학술대회논문집
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• 한국미생물생명공학회 1986년도 추계학술대회
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• pp.512.1-512
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• 1986

The cdd gene of Bacillus subtilis, encoding the deoxycytidinecytidine deaminase of pyrimidine nucleotide biosynthesis has been cloned into the EcoRl site of pBR322. The recombinant plasmid, pSol, promoted the synthesis of 100-140 fold elevated levels of the enzyme. A comparison of the polypeptides encoded by cdd complementing and non-complementing plasmids in the mini cell showed the gene product to have a molecular mass of approximately 14 kDa. The nucleotide sequence of the gene and 460 base pairs upstream from the coding region was determined. An open-reading frame, encoding a protein with a calculated molecular mass of 14337 Da, was deduced to be the coding region for cdd. However, the enzyme has an apparent molecular mass of 54 kDa as determined by gel filteration, whereas sucrose density gradient centrifugation shows 58 kDa. It means that the enzyme could be forming a tetramer in a physiological state. About 28 amino acids of the N-tetramer in a physiological state. About 28 amino acids of the N-terminal presumably form a signal for membrane translocation and six cystein residues are contained in the structure. S1 nuclease mapping indicated that transcription of cdd is initiated 17 base pairs upstream from the translational start. The structural characterization of the odd gene was performed.

• 미생물학회지
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• 제27권1호
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• pp.1-9
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• 1989

SV40 바이러스가 원숭이 세포(CVIP)에 감염한 후기에 생기는 poly A(-) 19S RNA의 5'끝과 splicing 유형을 알아보기 위하여 primer extension 및 그 변형방법을 행하였다. 이 RNA의 5' 끝은 SV40 후가 RNA들이 가장 많이 사용하는 cap 자리 인 잔기 325 위치임이 밝혀졌다. 또한 splicing 유형도 세포질의 polyA(+)인 19S RNA와 같은 잔기 373에서 잔기 5581까지의 intron이 제거된 형태이었다. Sl 뉴클리아제에 의한 분석결과 이 RNA의 3' 끝은 polyadenylation 위치로부터 상위로 약11kb에 걸쳐 다양하게 존재함을 알았다. 정상적인 cap 자리와 splicing 형태를 지닌 이 RNA가 왜 핵에 축적되는지의 이유를 조사하였다. 이 RNA상에 사용되지 못한채로 남아있는 3' splice 부위가 핵내 편재를 유발했는지의 여부를 알아보기 위하여, 3' splice 부위를 결손시킨 돌연변이 SV 40 pNA를 세포에 도입시켰다.. 그 결과 3'splice 자리가 없는 RNA는 세포질에 많이 축적됨을 관찰하였다. 이 결손 RNA의 세포질내 축적은 결손으로 인해 RNA의 안정성이 증가함으로써 비롯된 것이 아니라는 것을 actinomycin D 추적실험을 통해 밝혔다. 따라서 정상적인 19S spliced RNA가 세포질로 이동되는 과정을 방해하는 것은 사용되지 않은 3' splice 부위에 형성된 pre-splicing 복합체 때문인 것으로 여겨진다.

• Journal of Microbiology and Biotechnology
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• 제3권3호
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• pp.146-155
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• 1993

A DNA fragment from an alkali-tolerent Bacillus sp., conferring strong promoter activity, was subcloned into the promoter probe plasmid pPL703 and the nucleotide sequence of this promoter region was determined. The sequence analysis suggested that this highly efficient promoter region containing the complex clustered promoters comprised three kinds of promoters (P1, P2 and P3), which are transcribed by $\sigma^B (formerly \sigma^{37}), \sigma^E(formerly \sigma^{29}) and \sigma^A (formerly \sigma^{43})$ RNA polymerase holoenzymes which play major rules at the onset of endospore formation, during sporulation and at the vegetative phase of growth, respectively. S1 nuclease mapping experiments showed that all three promoters had staggered transcription initiation points. The results of chloramphenicol acetyltransferase assay after the subcloning experiments also indicated that the expression of these clustered promoters was correlated with the programs of growth and endospore development. Promoter P1, P2 and P3 were preceded by 75% AT, 79% AT and 81% AT regions, respectively, and a partial deletion of AT-rich region prevented transcription from promoter P1 in vivo. Two sets of 5 -AGTGTT-3 sequences and inverted repeat sequences located around the promoter P1 were speculated as the possible cis acting sites for the catabolite repression in B. subtilis. In vivo transcripts from these sequence regions may be able to form a secondary structure, however, the possibility that a regulatory protein induced by the excess amount of glucose could be bound to such a domain for crucial action remains to be determined.