• Title/Summary/Keyword: Restriction pattern

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Characterization of Cucumber mosaic virus Isolated from Water Chickweed(Stellaria aquatica)

  • Park, Gug-Seoun;Kim, Jae-Hyun;Kim, Jeong-Soo;Park, Jang-Kyung
    • The Plant Pathology Journal
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    • v.20 no.2
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    • pp.131-134
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    • 2004
  • A strain of Cucumber mosaic virus (CMV) was isolated from a weed, water chickweed (Stellaria aquatica), growing in the pepper field in Chunchon, Korea. This isolate, CMV-Sa, was differentiated from other CMVs based on biological properties and nucleotide sequence analysis of the coat protein (CP) gene. CMV-Sa showed different reactions to all the tested plants, except Capsicum annuum and Cucumis sativus, when compar-ed with those of CMV-Mf (subgroup I) and CMV-PaFM (subgroup II). Remarkably, in Nicotiana tabacum cvs. Samsun, Xanthi-nc and Ky-57, CMV-Sa induced local necrotic ring spots on the inoculated leaves and venal wave pattern and mosaic on the upper leaves. RNA analysis, serology, and RT-PCR of CP gene showed that CMV-Sa belonged to subgroup I of CMV. However, restriction enzyme analysis of the cDNA using AluI, HhaI, HincII, HindIII, HinfI and MspI showed that CMV-Sa was distinct from that of CMV-Mf. Based on comparison of the nucleotide of CP gene and deduced amino acid sequences between other CMV strains, CMV-Sa was closely related to CMV-Mf with 93.7% and 97.2 % identity, respectively.

Assicuation between Genetic Variation of the Insulin Receptor Gene and Essential Hypertension in the Korean Population

  • Kang, Byung-Yong;Kim, Ki-Tae;Eo, Hyun-Seon;Lee, Kyung-Ho;Hong, Sung-Soo;Shin, Jung-Hee;Lee, Chung-Choo
    • Animal cells and systems
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    • v.4 no.1
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    • pp.87-90
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    • 2000
  • Essential hypertension is a multifactorial disease, and has been shown to be associated with insulin resistance. The relationship between the genetic variation of the insulin receptor (INSR) gene and essential hypertension In Korean population was investigated by the Nsi 1 restriction fragment length polymorphism (RFLP) pattern of this gene. The observed genotype frequencies of INSR gene were not deviated from those expected for the Hardy-Weinberg equilibrium (HWE), but a significant association was observed between essential hypertension and N1 allele of Nsi 1 RFLP at the INSR gene ($X^2$-test; P<0.05). Moreover, the frequency of N1 allele was significantly different between normotensives and essential hypertensives in subgroups that were not obese ($X^2$-test; P<0.05). These data suggest that the Nsil RFLP of INSR gene may be a useful genetic marker for essential hypertension in Korean population.

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A Study on perceived Self-esteem and maternal Caretaking Behavior of College Students (대학생이 인지한 자아존중감과 어머니의 양육행동에 관한 연구)

  • Kim, Young-Hae;Kim, Soon-Goo
    • Korean Parent-Child Health Journal
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    • v.5 no.1
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    • pp.24-37
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    • 2002
  • The purpose of this study is to investigate the level of perceived self-esteem and maternal caretaking behaviors of college students. Data were collected through self-report questionnaires in which maternal caretaking behaviors and self-esteem were included. This study chose 293 students studying at universities and a college in Busan and a college in Taebaek as subjects. The data were analyzed by the SPSS program. The results were as follows ; 1. The mean score of the subjects on self-esteem was 29.6(Range=10-40). 2. The mean score of the subjects on maternal caretaking behaviors was 82.7(Range=22-110). The mean scores of subsets on the maternal caretaking behaviors were as follows ; achievement(4.03), affection(3.86), rational direction(3.79), active participation (3.60), consistent restriction(3.59), authoritative control(3.49) and over-protection(3.28). 3. The level of maternal caretaking behavior revealed some difference according to the students' gender and their mothers' academic career. 4. The level of self-esteem was positively correlated to the level of maternal caretaking behaviors in subjects. In conclusion, the above findings indicate that mothers' positive pattern of maternal caretaking behaviors are closely related to the students' higher self-esteem.

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Effect of Inlet Geometries on the Two-Phase Flow Distribution at Header-Channel Junction (헤더-채널 분기관에서의 헤더 입구 형상이 2상 유동 분배에 미치는 영향에 대한 실험적 연구)

  • Lee, Jun Kyoung
    • Korean Journal of Air-Conditioning and Refrigeration Engineering
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    • v.25 no.6
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    • pp.324-330
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    • 2013
  • The main objective of this work is to experimentally investigate the effect of inlet geometries on the distribution of two-phase annular flow at header-channel junctions simulating the corresponding parts of compact heat exchangers. The cross-section of the header and the channels were fixed to $16mm{\times}16mm$ and $12mm{\times}1.8mm$, respectively. Experiments were performed for the mass flux and the mass quality ranges of $30{\sim}140kg/m^2s$ and 0.3~0.7, respectively. Air and water were used as the test fluids. Three different inlet geometries of the header were tested:no restriction (case A), a single 8 mm hole at the center (case B), and nine 2 mm holes around the center (case C) at the inlet, respectively. The tendencies of the two-phase flow distribution were different, in each case. For cases B and C (flow resistance exists), more uniform flow distribution results were seen, compared with case A(no flow resistance), due to the flow pattern change to mist flow from annular flow at the inlet, and the flow recirculation near the end plate of the header.

Genome Snapshot of Paenibacillus polymyxa ATCC $842^T$

  • Jeong, Hae-Young;Kim, Ji-Hyun;Park, Yon-Kyoung;Kim, Seong-Bin;Kim, Chang-Hoon;Park, Seung-Hwan
    • Journal of Microbiology and Biotechnology
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    • v.16 no.10
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    • pp.1650-1655
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    • 2006
  • Bacteria belonging to the genus Paenibacillus are facultatively anaerobic endospore formers and are attracting growing ecological and agricultural interest, yet their genome information is very limited. The present study surveyed the genomic features of P. polymyxa ATCC $842^T$ using pulse-field gel electrophoresis of restriction fragments and sample genome sequencing of 1,747 reads (approximately 17.5% coverage of the genome). Putative functions were assigned to more than 60% of the sequences. Functional classification of the sequences showed a similar pattern to that of B. subtilis. Sequence analysis suggests nitrogen fixation and antibiotic production by P. polymyxa ATCC $842^T$, which may explain its plant growth-promoting effects.

In Silico Signature Prediction Modeling in Cytolethal Distending Toxin-Producing Escherichia coli Strains

  • Javadi, Maryam;Oloomi, Mana;Bouzari, Saeid
    • Genomics & Informatics
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    • v.15 no.2
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    • pp.69-80
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    • 2017
  • In this study, cytolethal distending toxin (CDT) producer isolates genome were compared with genome of pathogenic and commensal Escherichia coli strains. Conserved genomic signatures among different types of CDT producer E. coli strains were assessed. It was shown that they could be used as biomarkers for research purposes and clinical diagnosis by polymerase chain reaction, or in vaccine development. cdt genes and several other genetic biomarkers were identified as signature sequences in CDT producer strains. The identified signatures include several individual phage proteins (holins, nucleases, and terminases, and transferases) and multiple members of different protein families (the lambda family, phage-integrase family, phage-tail tape protein family, putative membrane proteins, regulatory proteins, restriction-modification system proteins, tail fiber-assembly proteins, base plate-assembly proteins, and other prophage tail-related proteins). In this study, a sporadic phylogenic pattern was demonstrated in the CDT-producing strains. In conclusion, conserved signature proteins in a wide range of pathogenic bacterial strains can potentially be used in modern vaccine-design strategies.

Diversity of Denitrifying Bacteria Isolated from Daejeon Sewage Treatment Plant

  • Lim Young-Woon;Lee Soon-Ae;Kim Seung Bum;Yong Hae-Young;Yeon Seon-Hee;Park Yong-Keun;Jeong Dong-Woo;Park Jin-Sook
    • Journal of Microbiology
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    • v.43 no.5
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    • pp.383-390
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    • 2005
  • The diversity of the denitrifying bacterial populations in Daejeon Sewage Treatment Plant was examined using a culture-dependent approach. Of the three hundred and seventy six bacterial colonies selected randomly from agar plates, thirty-nine strains that showed denitrifying activity were selected and subjected to further analysis. According to the morphological and biochemical properties, the thirty nine isolates were divided into seven groups. This grouping was supported by an unweighted pair group method, using an arithmetic mean (UPGMA) analysis with fatty acid profiles. Restriction pattern analysis of 16S rDNA with four endonucleases (AluI, BstUI, MspI and RsaI) again revealed seven distinct groups, consistent with those defined from the morphological and biochemical properties and fatty acid profiles. Through the phylogenetic analysis using the 16S rDNA partial sequences, the main denitrifying microbial populations were found to be members of the phylum, Proteobacteria; in particular, classes Gammaproteobacteria (Aeromonas, Klebsiella and Enterobacter) and Betaproteobacteria (Acidovorax, Burkholderia and Comamonas), with Firmicutes, represented by Bacillus, also comprised a major group.

Isolation of Nine Bacteriophages Shown Effective against Erwinia amylovora in Korea

  • Park, Jungkum;Kim, Byeori;Song, Sujin;Lee, Yong Whan;Roh, Eunjung
    • The Plant Pathology Journal
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    • v.38 no.3
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    • pp.248-253
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    • 2022
  • Erwinia amylovora is a devastating bacterial plant pathogen that infects Rosaceae including apple and pear and causes fire blight. Bacteriophages have been considered as a biological control agent for preventing bacterial infections of plants. In this study, nine bacteriophages (ΦFifi011, ΦFifi044, ΦFifi051, ΦFifi067, ΦFifi106, ΦFifi287, ΦFifi318, ΦFifi450, and ΦFifi451) were isolated from soil and water samples in seven orchards with fire blight in Korea. The genetic diversity of bacteriophage isolates was confirmed through restriction fragment length polymorphism pattern analysis. Host range of the nine phages was tested against 45 E. amylovora strains and 14 E. pyrifoliae strains and nine other bacterial strains. Among the nine phages, ΦFifi044 and ΦFifi451 infected and lysed E. amylovora only. And the remaining seven phages infected both E. amylovora and E. pyrifoliae. The results suggest that the isolated phages were different from each other and effective to control E. amylovora, providing a basis to develop biological agents and utilizing phage cocktails.

Behavioral Strategies for Weight Loss Maintenance (체중감량 이후 장기적인 유지를 위한 다양한 행동전략)

  • Young Hye Cho
    • Archives of Obesity and Metabolism
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    • v.2 no.1
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    • pp.6-10
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    • 2023
  • Compensatory changes in energy consumption and neuro-hormonal changes following weight loss make it difficult to maintain the reduced weight and may cause weight regain. Therefore, establishing a long-term weight control plan and strategy starting from the initial weight loss period is necessary. Both the patient and doctor should know that weight loss cannot occur continuously, and that maintaining weight after the weight loss period is the basic course of obesity treatment. No single dietary pattern is effective for weight maintenance, and a variety of dietary control methods - such as calorie restriction and healthy proportions of carbohydrates, proteins, fats, and meal replacements - should be used to target an integrated and healthy dietary habit. An increase in physical activity is needed for weight loss and maintenance; however, rather than recommending an excessive amount of exercise, it is better to set realistic and long-term achievable goals. It is necessary to reset the goal according to the patient's weight maintenance stage and continuously apply behavioral therapies, such as self-monitoring and stress management. In previous studies, since the degree of weight loss and changes in behavioral patterns over the course of one year were important factors in maintaining long-term weight loss, obesity therapists should closely examine patient data and behavioral patterns across a period of one year and actively intervene when needed.

A study on the determination of the number of mobility cluster (적정 이동군집수 결정에 관한 연구)

  • ;Ham, Sung Hun
    • Journal of the Korean Geographical Society
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    • v.30 no.2
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    • pp.120-131
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    • 1995
  • To analyze mobility patterns, this study used three Constraint (Capability Constraint, Coupling Constraint, Authority Constraint) models which were proposed in Dr. Hagerstrand's Time-space theory. This paper shows that three constraint models have some effects upon mobility by age. In this study, Capability Constraint means a certain special constraint that is what we can't do during proceeding basic natural urges like sleep, fare, etc. Coupling constraint is a physical one. Each person limits the action range for staying on a special place in special time. For instance, students have to stay in school so that they have mobility constraints. Authority Constraint is a social one. When we use urban facilities or traffic, we may be controlled by mobility sphere by an agreement or a social position. It is social agreement that the opening hour of a store, the time table of mass-transportation and a social positional control that the personal income, the standard of education. In this study it has been in a process of determination of the cluster number that degree of influences a social constraint to mobility. Considering the mobility constraint of characteristics of space divides urban and rural, people in urban area have higher mobility rate than in rural area. Resuets of determination of the cluster, show similar mobility pattern. People in urban area are connected verity of mobility which related to urban space structures with determination of cluste-number. That is to say, mobility patterns can be changed by space charactcristics. Constraints by sex and age are also social constraints and they are influenced by mobility patterns. For instance, females at the age of twenties have similar mobility pattern to the same age male but they have sudden changes after thirty's age. Male entertains a similar pattern without restriction of age. That is to say, management by sex as a social constraint affects mobility. To establish more realistic traffie policy, mobility formation should be reflected to the space in a view of social-behavioral science. To embody this, some problems should be investigated as follows. 1. As a problem of methodology, if sufficient samples ensured, we could subdivide clusters and could open up a new method of analyzing the mobility clusters by using the neuro-network. 2. Extracting actions connected with mobility and finding life cycle which is classified by daily cluste-characteristics, suitable counterproposal could be presented to the traific policy.

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