• Title/Summary/Keyword: Resonance structures

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Binding Structures of Diatomic Molecules to Co-Porphyrins on Au(111) Studied by Scanning Tunneling Microscopy

  • Lee, Soon-Hyeong;Kim, Ho-Won;Jeon, Jeong-Heum;Jang, Won-Jun;Kahng, Se-Jong
    • Proceedings of the Korean Vacuum Society Conference
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    • 2012.02a
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    • pp.130-130
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    • 2012
  • Axial bindings of diatomic molecules to metalloporphyrins involve in the dynamic processes of biological functions such as respiration, neurotransmission, and photosynthesis. The binding reactions are also useful in sensor applications and in control of molecular spins in metalloporphyrins for spintronic applications. Here, we present the binding structures of diatomic molecules to surface- supported Co-porphyrins studied using scanning tunneling microscopy. Upon gasexposure, three-lobed structures of Co-porphyrins transformed to bright ring shapes on Au(111), whereas H2-porphyrins of dark rings remained intact. The bright rings are explained by the structures of reaction complexes where a diatomic ligand, tilted away from the axis normal to the porphyrin plane, is under precession. Our results are consistent with previous bulk experiments using X-ray diffraction and nuclear magnetic resonance spectroscopy.

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Solution Structure of a GSK 3$\beta$ Binding Motif, A $AXIN^{pep}$

  • Kim, Yong-Chul;Jung, JIn-Won;Park, Hee-Yong;Kim, Hyun-Yi;Lee, Weon-tae
    • Journal of the Korean Magnetic Resonance Society
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    • v.9 no.1
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    • pp.38-47
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    • 2005
  • Axin is a scaffold protein of the APC/axin/GSK complex, binding to all of the other signalling components. Axin interacts with Glycogen synthase kinase 3$\beta$ (GSK 3$\beta$) and functions as a negative regulator of Wnt signalling pathways. To determine the solution structure of the GSK3$\beta$ binding regions of the axin, we initiated NMR study of axin fragment comprising residues 3$Val^{388} - Arg^{401}$using circular dichroism (CD) and two-dimensional NMR spectroscopy. The CD spectra of 3$axin^{pep}$ in the presence of 30% TFE displayed a standard 3$\alpha$-helical conformation, exhibiting the bound structure of 3$axin^{pep}$ to GSK3$\bata$. On the basis of experimental restraints including $NOE_s$, and $^3J_{HN\alpha} $ coupling constants, the solution conformation of $axin^{pep}$ was determined with program CNS. The 20 lowest energy structures were selected out of 50 final simulated-annealing structures in both water and TFE environment, respectively. The $RMSD_s$ for the 20 structures in TFE solution were 0.086 nm for backbone atoms and 0.195 nm for all heavy atoms, respectively. The Ramachandran plot indicates that the $\varphi$, $\psi$ angles of the 20 final structures is properly distributed in energetically acceptable regions. $Axin^pep$ in aqueous solutions consists of a stable $\alpha$-helix spanning residues form $Glu^{391}$ to $Val^{391} $, which is an interacting motif with GSK3$\beta$.

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Some Considerations on Cyclopentadiene by the Extended Huckel Method (Cyclopentadiene의 電子狀態와 反應性 (Extended Huckel Method에 依한))

  • Pack, Byung-Kak
    • Journal of the Korean Chemical Society
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    • v.12 no.3
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    • pp.85-88
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    • 1968
  • The resonance parameter value between the saturated carbon and unsaturated carbon atom in cyclopentadiene has been evaluated. And then cyclopentadiene has been investigated on the correlations between it's electronic structures and reactivities by means of the extended Huckel method proposed by R. Hoffmann.

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A Study on Evaluation of Floor Response Spectrum for Seismic Design of Non-Structural Components (비구조요소의 내진 설계를 위한 기존 층응답스펙트럼의 평가)

  • Choi, Kyung Suk;Yi, Waon Ho;Yang, Won-Jik;Kim, Hyung Joon
    • Journal of the Earthquake Engineering Society of Korea
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    • v.17 no.6
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    • pp.279-291
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    • 2013
  • The seismic damage of non-structural components, such as communication facilities, causes direct economic losses as well as indirect losses which result from social chaos occurring with downtime of communication and financial management network systems. The current Korean seismic code, KBC2009, prescribes the design criteria and requirements of non-structural components based on their elastic response. However, it is difficult for KBC to reflect the dynamic characteristics of structures where non-structural components exist. In this study, both linear and nonlinear time history analyses of structures with various analysis parameters were carried out and floor acceleration spectra obtained from analyses were compared with both ground acceleration spectra used for input records of the analyses and the design floor acceleration spectrum proposed by National Radio Research Agency. Also, this study investigates to find out the influence of structural dynamic characteristics on the floor acceleration spectra. The analysis results show that the acceleration amplification is observed due to the resonance phenomenon and such amplification increases with the increase of building heights and with the decrease of structure's energy dissipation capacities.

Self-Diffusion Coefficients of Colloidal Association Structures in ADS/OTAC Mixed Aqueous Solutions by Pulsed (Field) Gradient Spin Echo-NMR (Pulsed (Field) Gradient Spin Echo (PGSE) NMR에 의한 ADS/OTAC 혼합 수용액에서의 콜로이드 회합체의 자가 확산 계수)

  • Kim, Hong-Un;Lim, Kyung-Hee;Kim, Eun-Hee;Cheong, Chae-Joon
    • Journal of the Korean Applied Science and Technology
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    • v.19 no.4
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    • pp.339-348
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    • 2002
  • Self-diffusion coefficients of colloidal ass9Ciation structures in the aqueous solutions of anionic ammonium dodecyl sulfate (ADS) and cationic octadecyltrimethylammonium chloride (OTAC) surfactants were measured by pulsed-gradient spin echo NMR. The results were interpreted on the basis of the ADS/OTAC/water phase diagram. Crossing the phase boundaries, significant changes in self diffusion coefficients were observed and well correlated to the phase diagram. For the micelles their apparent radii were obtained from Stokes-Einstein equation. Their values were 15 for the ADS micelles and 54 ${{\AA}}$ for the OTAC micelles, respectively. For vesicles which were formed spontaneously at different relative amounts of the surfactants and total surfactant concentrations, the radius was measured as 50 to 200 nm. This result is in fair agreement with those by TEM and light scattering.

A Study of Natural Frequency in Steel Wind Turbine Tower according to the RNA Model (강재 풍력 터빈 타워의 상부구조 모델링 방법에 따른 고유진동수 특성에 대한 고찰)

  • Lee, Yun-Woo;Choi, Jun-Ho;Kang, Sung-Yong;Kang, Young-Jong
    • Journal of the Korean Society for Advanced Composite Structures
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    • v.5 no.3
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    • pp.37-42
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    • 2014
  • Wind turbine tower has a very important role in wind turbine system as one of the renewable energy that has been attracting attention worldwide recently. Due to the growth of wind power market, advance and development of offshore wind system and getting huger capacity is inevitable. As a result, the vibration is generated at wind turbine tower by receiving constantly dynamic loads such as wind load and wave load. Among these dynamic loads, the mechanical load caused by the rotation of the blade is able to make relatively periodic load to the wind turbine tower. So natural frequency of the wind turbine tower should be designed to avoid the rotation frequency of the rotor according to the design criteria to avoid resonance. Currently research of the wind turbine tower, the precise research does not be carried out because of simplifying the structure of the other upper and lower. In this study, the effect of blade modeling differences are to be analyzed in natural frequency of wind turbine tower.

Gaseous Structures in Barred Galaxies: Effects of the Bar Strength

  • Kim, Woong-Tae;Seo, Woo-Young;Kim, Yonghwi
    • The Bulletin of The Korean Astronomical Society
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    • v.37 no.2
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    • pp.73.1-73.1
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    • 2012
  • We use hydrodynamic simulations to study the physical properties of gaseous structures in barred galaxies and their relationships with the bar strength. We vary the bar mass fbar relative to the spheroidal component as well as its aspect ratio. We derive expressions for the bar strength Qb and the radius where the maximum bar torque occurs. When applied to observations, these expressions suggest that bars in real galaxies are most likely to have fbar = 0.25-0.5. Dust lanes approximately follow one of x1-orbits and tend to be more straight under a stronger and more elongated bar. A nuclear ring of a conventional x2 type forms only when the bar is not so massive or elongated. The radius of an x2-type ring is generally smaller than the inner Lindblad resonance, decreases systematically with increasing Qb, evidencing that the ring position is not determined by the resonance but by the bar strength. Nuclear spirals exist only when the ring is of the x2-type and sufficiently large in size. Unlike the other features, nuclear spirals are transient in that they start out as being tightly-wound and weak, and then due to the nonlinear effect unwind and become stronger until turning into shocks, with an unwinding rate higher for larger Qb.

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1H, 15N and 13C Backbone Assignments and Secondary Structures of C-ter100 Domain of Vibrio Extracellular Metalloprotease Derived from Vibrio vulnificus

  • Yun, Ji-Hye;Kim, Hee-Youn;Park, Jung-Eun;Cheong, Hae-Kap;Cheong, Chae-Joon;Lee, Jung-Sup;Lee, Weon-Tae
    • Bulletin of the Korean Chemical Society
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    • v.33 no.10
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    • pp.3248-3252
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    • 2012
  • Vibrio extracellular metalloprotease (vEP), secreted from Vibrio vulnificus, shows various proteolytic function such as prothrombin activation and fibrinolytic activities. Premature form of vEP has an N-terminal (nPP) and a C-terminal (C-ter100) region. The nPP and C-ter100 regions are autocleaved for the matured metalloprotease activity. It has been proposed that two regions play a key role in regulating enzymatic activity of vEP. Especially, C-ter100 has a regulatory function on proteolytic activity of vEP. C-ter100 domain has been cloned into the E. coli expression vectors, pET32a and pGEX 4T-1 with TEV protease cleavage site and purified using gel-filtration chromatography followed by affinity chromatography. To understand how C-ter100 modulates proteolytic activity of vEP, structural studies were performed by heteronuclar multi-dimensional NMR spectroscopy. Backbone $^1H$, $^{15}N$ and $^{13}C$ resonances were assigned by data from standard triple resonance and HCCH-TOCSY experiments. The secondary structures of vEP C-ter100 were determined by TALOS+ and CSI software based on hydrogen/deuterium exchange. NMR data show that C-ter100 of vEP forms a ${\beta}$-barrel structure consisting of eight ${\beta}$-strands.

Magnetic Resonance Findings of a Canine Benign Uveal Melanocytoma

  • Yoon, Hyounglok;Yu, Jin;An, Taegeon;Lee, Hanbin;Kim, Hakhyun;Kim, Dongwook;Chang, Jinhwa;Kang, Ji-Houn;Kim, Gonhyung;Chang, Dongwoo
    • Journal of Veterinary Clinics
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    • v.35 no.5
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    • pp.233-236
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    • 2018
  • A 13-year-old spayed female Beagle dog was referred with high intraocular pressure, hyperemia, and exophthalmos of the left eye and underwent ultrasound, which revealed a mass in the ciliary body of the left eye. Magnetic resonance (MR) imaging was ordered to evaluate invasion of surrounding structures and metastasis to the brain via the optic nerve. On MR imaging, a single, well-defined, smoothly marginated, triangular-to-oval-shaped mass was found. The mass was hyperintense on T1-weighted images and hypointense on T2-weighted images, similar to a previous case of ocular melanoma. The mass originated from the ciliary body and extended from the anterior chamber to the posterior chamber. Slight enhancement was observed in the mass. There was no evidence of invasion into surrounding structures or the optic nerve, and no sign of metastasis to the brain. The mass was histopathologically diagnosed as benign uveal melanocytoma.