• Title/Summary/Keyword: Redundancy analysis

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Influence of Peanut Cultivars and Environmental Conditions on the Diversity and Community Composition of Pod Rot Soil Fungi in China

  • Wang, Mian;Chen, Mingna;Yang, Zhen;Chen, Na;Chi, Xiaoyuan;Pan, Lijuan;Wang, Tong;Yu, Shanlin;Guo, Xingqi
    • Mycobiology
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    • v.45 no.4
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    • pp.392-400
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    • 2017
  • Peanut yield and quality are seriously affected by pod rot pathogens worldwide, especially in China in recent years. The goals of this study are to analyze the structure of fungal communities of peanut pod rot in soil in three peanut cultivars and the correlation of pod rot with environmental variables using 454 pyrosequencing. A total of 46,723 internal transcribed spacer high-quality sequences were obtained and grouped into 1,706 operational taxonomic units at the 97% similarity cut-off level. The coverage, rank abundance, and the Chao 1 and Shannon diversity indices of the operational taxonomic units were analyzed. Members of the phylum Ascomycota were dominant, such as Fusarium, Chaetomium, Alternaria, and Sordariomycetes, followed by Basidiomycota. The results of the heatmap and redundancy analysis revealed significant variation in the composition of the fungal community among the three cultivar samples. The environmental conditions in different peanut cultivars may also influence on the structure of the fungal community. The results of this study suggest that the causal agent of peanut pod rot may be more complex, and cultivars and environmental conditions are both important contributors to the community structure of peanut pod rot fungi.

A Study on Human Recognition Experiments with Handwritten Digit for Machine Recognition of Handwritten Digit (필기 숫자의 기계 인식을 위한 인간의 필기 숫자 인식 실험에 대한 고찰)

  • Yoon, Sung-Soo;Chung, Hyun-Sook;Yi, Kwang-Oh;Lee, Yill-Byeong;Lee, Sang-Ho
    • Journal of the Korean Institute of Intelligent Systems
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    • v.18 no.3
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    • pp.373-380
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    • 2008
  • So far there have been many researches on machine-based recognition of handwritten digit. But we have not yet attained the level of performance that can be satisfactory to men. The dissatisfaction with the performance of machine comes from not only the low accuracy of recognition but also the dissimilarity of the recognition results between man and machine. To reduce the difference of machine from man we first made an experiment with the human recognition of handwritten digits and then inquiry into the way of the human recognition that makes the results of men different from that of machine. We found out the attributes that play an important role in the human recognition process through the analysis of the experimental results like uni- and bi-directional confused pairs of digits, several ones unmixed up with another and the redundancy of mis-recognition, and proposed the approach direction to be able to improve the accuracy of the machine-based recognition, and furthermore the similarity in the recognition results of men and machine on the basis of the found facts above.

Building an Ontology-Based Diagnosis Process of Crohn's Disease Using the Differentiation Rule (감별 규칙을 이용한 온톨로지 기반 크론병 진단 프로세스 정의)

  • Yoo, Dong Yeon;Park, Ye-Seul;Lee, Jung-Won
    • KIPS Transactions on Software and Data Engineering
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    • v.7 no.11
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    • pp.443-450
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    • 2018
  • Crohn's disease, which is recently increasing in Korea, may be seen throughout the gastrointestinal tract and cause various symptoms. In particular, Crohn's disease is especially difficult to diagnose with several symptoms similar to other ulcerative colonic diseases. Thus, some studies are underway to distinguish two or more similar diseases. However, the previous studies have not described the procedural diagnosis process of it, which may lead to over-examination in the process. Therefore, we propose a diagnosis process of Crohn's disease based on the analysis of redundancy, sequential linkage and decision point in the diagnosis of Crohn's disease, so that it enables to identify ulcerative colonic diseases with symptoms similar to Crohn's disease. Finally, we can distinguish the colon diseases that have symptoms similar to Crohn's disease and help diagnose Crohn's disease effectively by defining the proposed process-oriented association as an ontology. Applying the proposed ontology to 5 cases showed that more accurate diagnosis was possible and in one case it could be diagnosed even with fewer tests.

A CPU-GPU Hybrid System of Environment Perception and 3D Terrain Reconstruction for Unmanned Ground Vehicle

  • Song, Wei;Zou, Shuanghui;Tian, Yifei;Sun, Su;Fong, Simon;Cho, Kyungeun;Qiu, Lvyang
    • Journal of Information Processing Systems
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    • v.14 no.6
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    • pp.1445-1456
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    • 2018
  • Environment perception and three-dimensional (3D) reconstruction tasks are used to provide unmanned ground vehicle (UGV) with driving awareness interfaces. The speed of obstacle segmentation and surrounding terrain reconstruction crucially influences decision making in UGVs. To increase the processing speed of environment information analysis, we develop a CPU-GPU hybrid system of automatic environment perception and 3D terrain reconstruction based on the integration of multiple sensors. The system consists of three functional modules, namely, multi-sensor data collection and pre-processing, environment perception, and 3D reconstruction. To integrate individual datasets collected from different sensors, the pre-processing function registers the sensed LiDAR (light detection and ranging) point clouds, video sequences, and motion information into a global terrain model after filtering redundant and noise data according to the redundancy removal principle. In the environment perception module, the registered discrete points are clustered into ground surface and individual objects by using a ground segmentation method and a connected component labeling algorithm. The estimated ground surface and non-ground objects indicate the terrain to be traversed and obstacles in the environment, thus creating driving awareness. The 3D reconstruction module calibrates the projection matrix between the mounted LiDAR and cameras to map the local point clouds onto the captured video images. Texture meshes and color particle models are used to reconstruct the ground surface and objects of the 3D terrain model, respectively. To accelerate the proposed system, we apply the GPU parallel computation method to implement the applied computer graphics and image processing algorithms in parallel.

Mass Occurrence of the Salp Salpa fusiformis during Spring 2017 in the Southern Waters of Korea and the Northern East China Sea (2017년 봄철 한국 남해와 북부동중국해의 살파 Salpa fusiformis 대량 출현)

  • Kang, Hyung-Ku;Kim, Garam;Kang, Jung-Hoon;Kim, Minju;Noh, Jae Hoon
    • Ocean and Polar Research
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    • v.41 no.3
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    • pp.135-145
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    • 2019
  • We investigated the mass occurrence of the salp Salpa fusiformis during spring in the southern waters of Korea and the northern East China Sea. Abundance of S. fusiformis and dominant taxonomic groups including copepods, ostracods, euphausiids, and appendicularian was examined along with environmental factors (e.g., temperature, salinity, and chlorophyll-a concentration). The abundance of S. fusiformis at 27 stations ranged from 0 to $183\;inds\;m^{-3}$. Both aggregate and solitary forms of S. fusiformis occurred with a mean abundance of $62\;inds\;m^{-3}$ and $4\;inds\;m^{-3}$, and mean body length of 6.5 mm and 15.4 mm, respectively. Redundancy analysis showed that the abundance of S. fusiformis was negatively correlated with chlorophyll-a concentration, indicating the intensive grazing impact of S. fusiformis on phytoplankton. While the abundance of S. fusiformis increased, the species diversity of zooplankton community decreased. The abundances of total copepods and the dominant copepod species (e.g., adults and/or copepodites of Paracalansus parvus s.l., Calanus sinicus, Oithona similis, and Corycaeus affinis) also decreased with the increase of S. fusiformis abundance. However, the abundance of ostracods, euphausiids, and appendicularians was not affected by the mass occurrence of the salps. These results suggest that the mass occurrence of S. fusiformis in spring could negatively affect ecosystem conditions by changing trophodynamics in the zooplankton community.

Collapse-resistant performance of a single-story frame assembly and multi-story sub-frame under an internal column-removal scenario

  • Zhong, Wei-hui;Tan, Zheng;Tian, Li-min;Meng, Bao;Zheng, Yu-hui;Daun, Shi-chao
    • Steel and Composite Structures
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    • v.41 no.5
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    • pp.663-679
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    • 2021
  • To elucidate the differences in the collapse behavior between a single-story beam-column assembly and multi-story frame, two 1/3-scale two-bay composite frames, including a single-story composite beam-column assembly and a three-story composite sub-frame, were designed and quasi-statically tested. The load-displacement responses, failure modes, and internal force development of the two frames were analyzed and compared in detail. Furthermore, the resistance mechanisms of the two specimens were explored, and the respective contributions of different load-resisting mechanisms to the total resistances were quantitatively separated to gain deeper insights. The experimental tests indicated that Vierendeel action was present in the two-dimensional multi-story frames, which led to an uneven internal force distribution among the three stories. The collapse resistance of TSDWA-3S in the flexural stage was not significantly increased by the structural redundancy provided by the additional story, as compared to that of TSDWA-1S. Although the development of the load response was similar in the two specimens at flexural stage, the collapse mechanisms of the multi-story composite frame were much more complicated than those of the single-story beam-column assembly, and the combined action between stories was critical in determining the internal force redistribution and rebalancing of the remaining structure.

Optimize KNN Algorithm for Cerebrospinal Fluid Cell Diseases

  • Soobia Saeed;Afnizanfaizal Abdullah;NZ Jhanjhi
    • International Journal of Computer Science & Network Security
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    • v.24 no.2
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    • pp.43-52
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    • 2024
  • Medical imaginings assume a important part in the analysis of tumors and cerebrospinal fluid (CSF) leak. Magnetic resonance imaging (MRI) is an image segmentation technology, which shows an angular sectional perspective of the body which provides convenience to medical specialists to examine the patients. The images generated by MRI are detailed, which enable medical specialists to identify affected areas to help them diagnose disease. MRI imaging is usually a basic part of diagnostic and treatment. In this research, we propose new techniques using the 4D-MRI image segmentation process to detect the brain tumor in the skull. We identify the issues related to the quality of cerebrum disease images or CSF leakage (discover fluid inside the brain). The aim of this research is to construct a framework that can identify cancer-damaged areas to be isolated from non-tumor. We use 4D image light field segmentation, which is followed by MATLAB modeling techniques, and measure the size of brain-damaged cells deep inside CSF. Data is usually collected from the support vector machine (SVM) tool using MATLAB's included K-Nearest Neighbor (KNN) algorithm. We propose a 4D light field tool (LFT) modulation method that can be used for the light editing field application. Depending on the input of the user, an objective evaluation of each ray is evaluated using the KNN to maintain the 4D frequency (redundancy). These light fields' approaches can help increase the efficiency of device segmentation and light field composite pipeline editing, as they minimize boundary artefacts.

Comparison of RNA Interference-mediated Gene Silencing and T-DNA Integration Techniques for Gene Function Analysis in Chinese Cabbage (RNA Interference 및 T-DNA Integration 방법에 의한 배추 기능유전자 Silencing 효과 비교)

  • Yu, Jae-Gyeong;Lee, Gi-Ho;Park, Young-Doo
    • Horticultural Science & Technology
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    • v.30 no.6
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    • pp.734-742
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    • 2012
  • To compare RNA interference-mediated gene silencing technique and T-DNA integration for gene function analysis in Chinese cabbage, BrSAMS-knockout (KO) line and BrSAMS-knockdown (KD) line were used. The KO line had lost the function of a Brassica rapa S-adenosylmethionine synthetase (BrSAMS) gene by T-DNA insertion and the KD line had shown down-regulated BrSAMS genes' expression by dsRNA cleavage. From microarray results of the KO and KD lines, genes linked to SAMS such as sterol, sucrose, homogalacturonan biosynthesis and glutaredoxin-related protein, serine/threonine protein kinase, and gibberellin-responsive protein showed distinct differences in their expression levels. Even though one BrSAMS gene in the KO line was broken by T-DNA insertion, gene expression pattern of that line did not show remarkable differences compared to wild type control. However, the KD line obtained by RNAi technique showed prominent difference in its gene expression. Besides, change of polyamine and ethylene synthesis genes directly associated with BrSAMS was displayed much more in the KD line. In the microarray analysis of the KO line, BrSAMS function could not be clearly defined because of BrSAMS redundancy due to the genome triplication events in Brassicaceae. In conclusion, we supposed that gene knock-down method by RNAi silencing is more effective than knock-out method by T-DNA insertion for gene function analysis of polyploidy crops such as Chinese cabbage.

A Study on the Ultimate Strength Behavior according to Modeling Range of the Stiffened Plate (선체보강판의 모델링범위에 따른 최종강도거동에 관한 연구)

  • Park, Joo-Shin;Ko, Jae-Yong;Park, Sung-Hyeon
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.10 no.2 s.21
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    • pp.35-39
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    • 2004
  • Ship structures are basically an assembly of plate elements and the load-carrying capacity or the ultimate strength is one of the most important criteria for safety assessment and economic design. Also, Structural elements making up ship plated structures do not work separately, resulting in high degree of redundancy and complexity, in contrast to those of steel framed structures. To enable the behavior of such structures to be analyzed simplifications or idealizations must essentially be made considering the accuracy needed and the degree of complexity of the analysis to be used On this study, to investigate effect of modeling range, the finite element method are used and their results are compared varying the analysis ranges. The model has been selected from bottom panels of merchant ship structures. For FHA, three types of structural modeling are adopted in terms of the extent of the analysis. The purpose of the present study is to numerically calculate the characteristics of ultimate strength behavior according to the analysis ranges of stiffened panels subject to uniaxial compressive loads.

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Development of a Framework for Evaluating Water Quality in Estuarine Reservoir Based on a Resilience Analysis Method (회복탄력성 분석 기반 담수호 수질 평가 프레임워크 개발)

  • Hwang, Soonho;Jun, Sang Min;Kim, Kyeung;Kim, Seok Hyun;Lee, Hyunji;Kwak, Jihae;Kang, Moon Seong
    • Journal of The Korean Society of Agricultural Engineers
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    • v.62 no.5
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    • pp.105-119
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    • 2020
  • Although there have been a lot of efforts to improve water quality in the estuarine reservoir, overall the water quality problems of the estuarine reservoirs remain. So, it is essential to establish water quality management plans under a comprehensive understanding of the environmental characteristics of the estuarine reservoir. Therefore, in this study, a resilience analysis framework for evaluating the estuarine reservoir's water quality was suggested for improving existing assessment method for water quality management plan. First, as a result of analyzing the static resilience to each scenario, it was found that from the S3 scenario in which dredging was conducted considerably, the resilience of about 30% more than the current estuarine reservoir system was restored. Second, as a result of analyzing the dynamic resilience, if cost and time are considered, there is no significant difference in robustness and resourcefulness, so it can be seen that the resilience of the estuarine reservoir can be efficiently improved by simply performing dredging up to the level of Scenario 3. Finally, as a result of comparing static and dynamic resilience, since static resilience is only presented as a single value, the differences and characteristics of the resilience capacity of the estuarine reservoir might be overlooked only by the static resilience analysis. However, in the aspect that it is possible to interpret the internal recovery capacity of the estuarine reservoir in multiple ways with various indicators (robustness, redundancy, resourcefulness, rapidity), evaluating water quality based on dynamic resilience analysis is useful.