• Journal of Plant Biotechnology
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• 제44권4호
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• pp.349-355
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• 2017

The amino acid composition of rice is a major concern of rice breeders because amino acids are among the most important nutrient components in rice. In this study, a genetic map was constructed with a population of 134 recombinant inbred lines (RILs) from a cross between Dasanbyeo (Tongil-type indica) and TR22183 (temperate japonica), as a means to detect the main and epistatic effect quantitative trait loci (QTLs) for the amino acid content (AAC). Using a linkage map which covered a total of 1458 cM based on 239 molecular marker loci, a total of six main-effect QTLs (M-QTLs) was identified for the content of six amino acids that were mapped onto chromosome 3. For all the M-QTLs, the TR22183 allele increased the trait values. The QTL cluster (flanked by id3015453 and id3016090) on chromosome 3 was associated with the content of five amino acids. The phenotypic variation, explained by the individual QTLs located in this cluster, ranged from 10.2 to 12.4%. In addition, 26 epistatic QTLs (Ep-QTLs) were detected and the 25 loci involved in this interaction were distributed on all nine chromosomes. Both the M-QTLs and Ep-QTLs detected in this study will be useful in breeding programs which target the development of rice with improved amino acid composition.

• Journal of Crop Science and Biotechnology
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• 제11권3호
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• pp.171-176
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• 2008

The agronomic traits, such as days to flowering and maturity, plant height, 100-seed weight and seed filling period, are quantitatively inherited and important characters in soybean(Glycine max L. Merr.). A total of 126 $F_5$ recombinant inbred lines(RILs) developed from the cross of PI 171451$\times$Hwaeomputkong were used to identify quantitative trait loci(QTLs) for days to flowering(FD), days to maturity(MD), plant height(PH), 100-seed weight(SW), number of branches(NB) and seed filling period(FP). A total of 136 simple sequence repeat(SSR) markers segregated in a RIL population were distributed over 20 linkage groups(LGs), covering 1073.9 cM of the soybean genome with the average distance between adjacent markers of 7.9 cM. Five independent QTLs were identified for FD, three for MD, two for PH, three for SW, one for NB and one for FP. Of these, three QTLs were related to more than two traits of FD, MD, PH, NB and FP and mapped near the same positions on LGs H and O. Thus, these traits could be correlated with biologically controlled major QTLs in this soybean RIL population.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.146-146
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• 2017

The pod shattering or dehiscence is essential for the propagation of pod-bearing plant species in the wild, but it causes significant yield losses during harvest of domesticated crop plants. Identifying novel molecular makers, which are linked to seed-shattering genes, is needed to employ the molecular marker-assisted selection for efficiently developing shattering-resistant soybean varieties. In this study, a genetic linkage map was constructed using 115 recombinant inbred lines (RILs) developed from crosses between the pod shattering susceptible variety, Keunol, and resistant variety, Sinpaldal. A 180 K Axiom(R) SoyaSNPs data and pod shattering data from two environments in 2001 and 2015 were used to identify quantitative trait loci (QTL) for pod shattering. A major QTL was identified between two flanking single nucleotide polymorphism (SNP) markers, AX-90320801 and AX-90306327 on chromosome 16 with 1.3 cM interval, 857 kb of physical range. In sequence, genotype distribution analysis was conducted using extreme phenotype RILs. This could narrow down the QTL down to 153 kb on the physical map and was designated as qPDH1-KS with 6 annotated gene models. All exons within qPDH1-KS were sequenced and the 6 polymorphic SNPs affecting the amino acid sequence were identified. To develop universally available molecular markers, 38 Korean soybean cultivars were investigated by the association study using the 6 identified SNPs. Only two SNPswere strongly associated with the pod shattering. These two identified SNPs will help to identify the pod shattering responsible gene and to develop pod shattering-resistant soybean plants using marker-assisted selection.

• 한국작물학회지
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• 제49권3호
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• pp.160-166
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• 2004

벼 M/G RIL 162 계통에 대한 초기급속등숙율에 대한 이화학적특성 및 색차색도특성 변이에 대한 주성분분석 및 유전력분석의 결과를 요약하면 다음과 같다. 1. 초기급속등숙율이 41％ 이하인 계통군은 164계통중 74계통이었으며, 41∼60％의 계통군에는 32계통이 있었다. 또한, 초기급속등숙율이 빠른 계통군에 속하는 61∼80％사이에는 24계통이 있었으며, 초기급속등숙율이 매우 빠른 계통군으로 분류되는 81％ 이상인 계통은 32계통이 있었다. 2. 벼 M/G RIL 164계통에 대한 품종군별 이화학적특성을 보면, 초기급속등숙을이 40％ 이하인 계통군이 단백질 함량이 9.1％로 가장 높았으며, 지방산함량은 초기급속등숙율이 61∼80％의 계통군에서 26.5KOHmg/100g으로 가장 높게 나타났다. 또한, 곡립형태에 있어서 현미길이는 41∼60％사이의 초기급속등숙율을 보인 계통군이 5.40mm로 가장 짧았으며, 81％ 이상인 계통군이 1.80mm로 현미두께가 가장 두꺼웠으며, 현미의 형태를 나타내는 현미 길이/넓이 비에 있어서는 41∼60％사이의 계통군이 2.18로 나타났다. 3. 호화온도와 깊은 관련이 있는 알카리붕괴도에 있어서는 초기급속등숙율이 61∼80％사이가 3.40으로 가장 붕괴가 되지않는 계통군으로 나봤으며, 81％이상인 계통군은 4.31로서 붕괴가 가장 잘 되는 것으로 나타나 81％의 계통군이 호화온도가 낮은 것으로 나타났다. 4. 화학적특성, 색차색도특성 및 알카리붕괴도를 이용한 벼M/G RIL 164 계통에 대한 주성분분석의 결과 제 1주성분은 약 3.6개의 형질을 포함하고 있었으며, 제 2주성분은 약 2.1개의 형질을 포함하고 있는 것으로 밝혀졌다. 또한, 제 1주성분은 전체 변동에 대한 기여율은 약 36％이었으며, 제 4주성분까지의 전체 변동에 대한 누적 기여율은 86.4％로서 설명이 가능함을 알 수 있었다. 5. 벼 M/G RIL 164 계통의 품질평가치, 단백질함량, 아밀로오스함량, 지방산함량, 명도, a-value, b-value, 채도, 색상 및 알카리붕괴도 등의 형질에 대한 유전력 검정의 결과, 품질평가치의 유전력은 87.89％로 가장 높은 유전력을 나타내었으며, 단백질함량 ＞ 알카리붕괴도 ＞ 지방산함량 ＞ 아밀로오스함량 ＞ 색상 ＞ 명도 ＞ a-value ＞ b-value의 순으로 나타났으며, 채도의 유전력은 30.62％로 가장 낮음을 알 수 있었다.

• 한국작물학회지
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• 제66권3호
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• pp.248-255
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• 2021

본 연구는 고품질의 들깨 신품종 육성을 위한 기초 자료로서 모본으로 종실용 품종인 '대실'과 부본으로 잎전용 품종인 '잎들깨1호'를 이용하여 교배된 재조합 집단(F₁)을 양성하였고, F₂세대부터 SSD법으로 계통을 전개한 고세대(F₇) RIL집단 277계통들에 대해서 농업적 형질과 종실의 품질특성을 비교하였다. 재조합 집단의 주요 농업적 형질의 변이를 분석한 결과 경장은 66~150 cm, 유효분지수는 5~23개, 화방군장은 5.1~10.5 cm, 화방군수는 17~131개 및 화방군당삭수는 23~39개 등으로 분포하였다. 종실의 품질 특성을 분석한 결과 주요 지방산인 리놀렌산(C18:3)은 54.2~64.1%, 기능 성분인 rosmarinic acid는 869.5~3,508.1 ㎍/g, luteolin은 47.4~864.3 ㎍/g 및 apigenin은 57.1~296.7 ㎍/g 등으로 분포하였다. 조사된 대부분의 농업적 형질이 변이의 폭이 크면서 정규곡선 양상을 보였으며, 양친의 특성보다 우월한 특성을 가진 후대들이 많이 나타나는 초월분리 현상을 확인하였다. 이러한 결과는 F₇ RIL 집단이 향후 QTL 분석뿐만 아니라 우수 품종 육성을 위한 중간 모본 양성에도 유용하게 활용될 수 있을 것으로 판단된다.

• Plant Breeding and Biotechnology
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• 제1권1호
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• pp.1-8
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• 2013

Low-temperature stress is an important factor controlling the growth and development of rice (Oryza sativa L.) in temperate region. In this study, a molecular linkage map consisting of 136 SSR markers was employed to identify QTL associated with cold tolerance at the seedling stage. 80 recombinant inbred lines (RILs) from an intersubspecific cross between Milyang23 (O. sativa ssp. Indica) and Hapcheonaengmi3, a japonica weedy rice and the parents were evaluated for leaf discoloration and SAPD value of seedlings. Rice plants were grown for 15 days in the low-temperature condition (13/20℃ day/night) and the control condition (25/20℃ day/night) in the growth chamber. The degree of leaf discoloration showed a highly significant correlation with the SPAD value in the low-temperature plot (r = -0.708, P < 0.0001). A total of four QTLs for SPAD were identified and the phenotypic variance explained by each QTL ranged from 5.4 to 16.0%. Two QTLs detected in the control condition were located on chromosomes 2 and 5, respectively. Two QTL on chromosomes 1 and 4 were detected at the low-temperature condition and Hapcheonaengmi3 alleles increased the SPAD values at these loci. Substitution mapping was conducted to delimit the position of qSPA-4 using introgression lines derived from the same cross. Results indicated that qSPA-4 was located in a 810-Kb region flanked by RM16333 and RM16368. The results indicated that Hapcheonaengmi3 contains QTL alleles that are likely to improve cold tolerance of Indica rice.

• 생명과학회지
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• 제17권5호
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• pp.599-605
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• 2007

콩에서 종자의 수와 협의 수가 주된 수량구성요소이다. 그리고 육종의 주된 목표는 수량을 증가시키기 위한 요인들을 선발하는 것이다. 따라서 본 연구의 목적은 큰올콩과 신팔달콩의 $F_{10}$세대의 RIL계통을 이용하여 주당협수와 주당립수 및 협당립수를 조절하는 양적형질유전자좌(QTL)를 확인하는 것이다. 주당협수와 연관된 QTL은 개별 마커들과의 분산분석 결과, 연관군 F와 L에서 2개의 QTL을 탐색하였으며, 주당립수도 연관군 F와 L에서 2개의 QTL을 탐색하였다. 협당립수는 연관군 D1a와 D1b 및 F에서 3개의 QTL을 탐색하였다. 따라서 주당협수와 주당립수와 관련된 QTL 연관군 F와 L에서 공통으로 탐색되었는데, 이는 품종 육성과정에서 이들 형질과 관련한 선발 마커로서 활용 가치가 높은 것으로 판단된다.

• Molecules and Cells
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• 제26권2호
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• pp.146-151
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• 2008

The brown planthopper (BPH) is a major insect pest in rice, and damages these plants by sucking phloem-sap and transmitting viral diseases. Many BPH resistance genes have been identified in indica varieties and wild rice accessions, but none has yet been cloned. In the present study we report fine mapping of the region containing the Bph1 locus, which enabled us to perform marker-aided selection (MAS). We used 273 F8 recombinant inbred lines (RILs) derived from a cross between Cheongcheongbyeo, an indica type variety harboring Bph1 from Mudgo, and Hwayeongbyeo, a BPH susceptible japonica variety. By random amplification of polymorphic DNA (RAPD) analysis using 656 random 10-mer primers, three RAPD markers (OPH09, OPA10 and OPA15) linked to Bph1 were identified and converted to SCAR (sequence characterized amplified region) markers. These markers were found to be contained in two BAC clones derived from chromosome 12: OPH09 on OSJNBa0011B18, and both OPA10 and OPA15 on OSJNBa0040E10. By sequence analysis of ten additional BAC clones evenly distributed between OSJNBa0011B18 and OSJNBa0040E10, we developed 15 STS markers. Of these, pBPH4 and pBPH14 flanked Bph1 at distances of 0.2 cM and 0.8 cM, respectively. The STS markers pBPH9, pBPH19, pBPH20, and pBPH21 co-segregated with Bph1. These markers were shown to be very useful for marker-assisted selection (MAS) in breeding populations of 32 F6 RILs from a cross between Andabyeo and IR71190, and 32 F5 RILs from a cross between Andabyeo and Suwon452.

• Molecules and Cells
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• 제37권2호
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• pp.149-160
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• 2014

Plant breeders have focused on improving plant architecture as an effective means to increase crop yield. Here, we identify the main-effect quantitative trait loci (QTLs) for plant shape-related traits in rice (Oryza sativa) and find candidate genes by applying whole genome re-sequencing of two parental cultivars using next-generation sequencing. To identify QTLs influencing plant shape, we analyzed six traits: plant height, tiller number, panicle diameter, panicle length, flag leaf length, and flag leaf width. We performed QTL analysis with 178 $F_7$ recombinant inbred lines (RILs) from a cross of japonica rice line 'SNU-SG1' and indica rice line 'Milyang23'. Using 131 molecular markers, including 28 insertion/deletion markers, we identified 11 main- and 16 minor-effect QTLs for the six traits with a threshold LOD value > 2.8. Our sequence analysis identified fifty-four candidate genes for the main-effect QTLs. By further comparison of coding sequences and meta-expression profiles between japonica and indica rice varieties, we finally chose 15 strong candidate genes for the 11 main-effect QTLs. Our study shows that the whole-genome sequence data substantially enhanced the efficiency of polymorphic marker development for QTL fine-mapping and the identification of possible candidate genes. This yields useful genetic resources for breeding high-yielding rice cultivars with improved plant architecture.

• 한국작물학회지
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• 제49권5호
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• pp.429-433
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• 2004

A single recessive gene, rxp, controls the bacterial leaf pustule (BLP) resistance in soybean and in our previous article, it has been mapped on linkage group (LG) D2 of molecular genetic map of soybean. A total of 130 recombinant inbred lines (RILs) from a cross between BLP-resistant SS2-2 and BLP-susceptible Jangyeobkong were used to identify molecular markers linked to rxp. Fifteen simple sequence repeat (SSR) markers on LG D2 were screened to construct a genetic map of rxp locus. Only four SSR markers, Satt135, Satt372, Satt448, and Satt486, showed parental polymorphisms. Using these markers, genetic scaffold map was constructed covering 26.2cM. Based on the single analysis of variance, Satt372 among these four SSR markers was the most significantly associated with the resistance to BLP. To develop new amplified fragment length polymorphism (AFLP) marker linked to the resistance gene, bulked segregant analysis (BSA) was employed. Resistance and susceptible bulks were made by pooling equal amount of genomic DNAs from ten of each in the segregating population. A total of 192 primer combinations were used to identify specific bands to the resistance, selecting three putative AFLP markers. These AFLP markers produced the fragment present in SS2-2 and the resistant bulk, and not in Jangyeobkong and the susceptible bulk. Linkage analysis revealed that McctEact97 $(P=0.0004,\;R^2=14.67\%)$ was more significant than Satt372, previously reported as the most closely linked marker.