• 제목/요약/키워드: RNA quality control

검색결과 107건 처리시간 0.02초

Correlation between Heart-type Fatty Acid-binding Protein Gene Polymorphism and mRNA Expression with Intramuscular Fat in Baicheng-oil Chicken

  • Wang, Yong;He, Jianzhong;Yang, Wenxuan;Muhantay, Gemenggul;Chen, Ying;Xing, Jinming;Liu, Jianzhu
    • Asian-Australasian Journal of Animal Sciences
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    • 제28권10호
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    • pp.1380-1387
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    • 2015
  • This study aims to determine the polymorphism and mRNA expression pattern of the heart-type fatty acid-binding protein (H-FABP) gene and their association with intramuscular fat (IMF) content in the breast and leg muscles of Baicheng oil chicken (BOC). A total of 720 chickens, including 240 black Baicheng oil chicken (BBOC), 240 silky Baicheng oil chicken (SBOC), and 240 white Baicheng oil chicken (WBOC) were raised. Three genotypes of H-FABP gene second extron following AA, AB, and BB were detected by polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) strategy. The G939A site created AA genotype and G956A site created BB genotype. The content of IMF in AA genotype in breast muscle of BBOC was significantly higher than that of AB (p = 0.0176) and the genotype in leg muscle of WBOC was significantly higher than that of AB (p = 0.0145). The G939A site could be taken as genetic marker for higher IMF content selecting for breast muscle of BBOC and leg muscle of WBOC. The relative mRNA expression of H-FABP was measured by real-time PCR at 30, 60, 90, and 120 d. The IMF content significantly increased with age in both muscles. The mRNA expression level of H-FABP significantly decreased with age in both muscles of the three types of chickens. Moreover, a significant negative correlation between H-FABP abundance and IMF content in the leg muscles of WBOC (p = 0.035) was observed. The mRNA expression of H-FABP negatively correlated with the IMF content in both breast and leg muscles of BOC sat slaughter time.

한우 c-fos 유전자의 염기서열 및 발현분석 (Sequence and Expression Analysis of c-fos Proto-oncogene in Korean Cattle (HANWOO))

  • 유성란;정행진;정기철;이준헌;조규완;최재관;나기준;상병찬
    • Journal of Animal Science and Technology
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    • 제45권6호
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    • pp.891-900
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    • 2003
  • c-fos 유전자는 전사조절인자로서 주로 c-jun family와 결합하여 heterodimers를 형성하며 AP-1 조절 부위를 가지는 유전자들의 전사를 조절하는 것으로 알려져 있다. 이 유전자의 발현은 myoblasts를 비롯한 여러 세포의 분화와 성장을 조절하며 최근 돼지에서 육질에 영향을 미치는 근섬유와 관련된다는 보고가 있다. 본 연구는 소에서 육질과 c-fos 유전자와의 관계를 알아보기 위한 기초자료로서 총 1,443 bp의 mRNA 염기서열을 최초로 소에서 밝혔으며 여러 조직과 기관에서의 발현양상도 살펴보았다. 한우의 c-fos 유전자의 염기서열을 사람, 돼지 및 쥐와 비교하여 본 결과 각각 89.8%, 93.5%와 87.0%의 높은 상동성을 보였다. 이 유전자의 발현은 근육중 갈비에서 가장 많은 발현량을 보였고, 조직에서는 비장에서 가장 많은 발현량을 보이는 것을 알 수 있었다. 이 연구에서 밝혀진 c-fos 유전자는 SNP의 추가분석에 의해 한우에서 육질의 향상과 관련이 있는 후보유전자로 쓰일 수 있을 것으로 사료된다.

Effects of enzymolysis and fermentation of Chinese herbal medicines on serum component, egg production, and hormone receptor expression in laying hens

  • Mei Hong Jiang;Tao Zhang;Qing Ming Wang;Jin Shan Ge;Lu Lu Sun;Meng Qi Li;Qi Yuan Miao;Yuan Zhao Zhu
    • Animal Bioscience
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    • 제37권1호
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    • pp.95-104
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    • 2024
  • Objective: In the present study, we aimed to investigate the effects of enzymolysis fermentation of Chinese herbal medicines (CHMs) on egg production performance, egg quality, lipid metabolism, serum reproductive hormone levels, and the mRNA expression of the ovarian hormone receptor of laying hens in the late-laying stage. Methods: A total of 360 Hy-Line Brown laying hens (age, 390 days) were randomly categorized into four groups. Hens in the control (C) group were fed a basic diet devoid of CHMs, the crushed CHM (CT), fermented CHM (FC), and enzymatically fermented CHM (EFT) groups received diets containing 2% crushed CHM, 2% fermented CHM, and 2% enzymatically fermented CHM, respectively. Results: Compared with crushed CHM, the acid detergent fiber, total flavonoids, and total saponins contents of fermented CHM showed improvement (p<0.05); furthermore, the neutral and acid detergent fiber, total flavonoids, and total saponins contents of enzymatically fermented CHM improved (p<0.05). At 5 to 8 weeks, hens in the FC and EFT groups showed increased laying rates, haugh unit, albumin height, yolk color, shell thickness, and shell strength compared with those in the C group (p<0.05). Compared with the FC group, the laying rate, albumin height, and Shell thickness in the EFT group was increased (p<0.05). Compared with the C, CT, and FC groups, the EFT group showed reduced serum total cholesterol and increased serum luteinizing hormone levels and mRNA expressions of follicle stimulating hormone receptor and luteinizing hormone receptor (p<0.05). Conclusion: These results indicated that the ETF group improved the laying rate and egg quality and regulated the lipid metabolism in aged hens. The mechanism underlying this effect was likely related to cell wall degradation of CHM and increased serum levels of luteinizing hormone and mRNA expression of the ovarian hormone receptor.

마늘발효액의 첨가 급여가 산란계의 산란말기 생산성, 계란 품질 및 혈액성상에 미치는 영향 (Effect of Dietary Fermented Garlic Solution on Performance, Egg Quality and Blood Composition in Finishing Period of Laying Hens)

  • 임천익;강창원;천현수;최호성;류경선
    • 한국가금학회지
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    • 제45권3호
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    • pp.201-207
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    • 2018
  • 본 연구는 산란 후기사료에 마늘발효액을 수준별로 첨가 급여시 산란계의 생산성, 계란품질 및 혈액성상에 미치는 영향을 구명하고자 실시하였다. 79주령 로만브라운 산란계를 4개 처리구 6반복으로 반복 당 18수씩 총 432수를 배치하였고, 각 처리구에 마늘발효액을 0%, 0.05%, 0.10% 및 0.20%로 4주간 급여하였다. 산란 수와 난중은 매일 조사하였고, 계란품질, 난황지방산 및 혈액성상은 사양실험 종료 후 분석하였다. 본 연구결과, 산란율과 사료요구율은 마늘발효액 급여구에서 대조구에 비하여 수치적으로 개선되었지만, 처리구간에 통계적 차이가 없었고, 난각강도와 두께도 마늘발효액 첨가수준에 따른 유의성이 없었다. 계란의 난백 높이와 호우유닛은 마늘발효액 첨가수준에 따라 일관적으로 증가하여 0.20%급여구에서 제일 높게 나타났으며, 대조구에 비하여 통계적으로 차이를 보였다(P<0.05). 난황지방산은 마늘발효액의 0.10%와 0.20% 첨가구에서 포화지방산은 감소되었고, 단일불포화지방산과 전체 불포화지방산은 현저하게 증가하였다(P<0.05). 혈중 알부민, AST 및 ALT은 처리구간에 차이가 없었지만, 중성지방과 콜레스테롤은 0.20% 급여구에서 대조구에 비해 매우 감소하였다(P<0.05). 또한 HDL콜레스테롤은 마늘발효액 0.10%와 0.20% 급여구에서 대조구에 비하여 유의적으로 증가하였고(P<0.05), 세포성 면역능 지표인 IL-2 mRNA와 CD4+CD8+의 비율도 0.10%와 0.20% 급여구에서 다른 처리구에 비하여 통계적으로 높게 나타났다(P<0.01). 본 실험 결과, 산란 말기 사료에 마늘발효액 0.20% 수준의 급여로 대조구에 비하여 계란품질과 건강 및 혈중 면역인자는 개선되었다.

Light modulates the transcriptomic accumulation of anthocyanin biosynthetic pathway genes in red and white grapes

  • Puspa Raj Poudel ;Kazuya Koyama ;Nami Goto-Yamamoto
    • Journal of Plant Biotechnology
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    • 제49권4호
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    • pp.292-2999
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    • 2022
  • Anthocyanin, an important component in the grape berry skin, strongly affects grape quality. The transcription factors VvMYBA1 and VvMYBA2 (VvMYBA1/2) control anthocyanin biosynthesis. In addition, cultivation and environmental factors, such as light, influence anthocyanin accumulation. The present study aimed to clarify the effect of shading (reduced light condition) on the transcriptomic regulation of anthocyanin biosynthesis using a red-wine grape cultivar, Vitis vinifera 'Pinot Noir', and its white mutant, 'Pinot Blanc', caused by the deletion of the red allele of VvMYBA1/2. The grape berry skins were analyzed for anthocyanin content and global gene transcription accumulation. The microarray data were later validated by quantitative real-time PCR. A decisive influence of VvMYBA1/2 on the expression of an anthocyanin-specific gene, UDP glucose: flavonoid 3-O-glucosyltransferase, was observed as expected. In contrast, upstream genes of the pathway, which are shared by other flavonoids, were also expressed in 'Pinot Blanc', and the mRNA levels of some of these genes decreased in both cultivars on shading. Thus, the involvement of light-sensitive transcription factor(s) other than VvMYBA1/2 was suggested for the expression control of the upstream genes of the anthocyanin biosynthetic pathway. Furthermore, it was suggested that the effects of these factors are different among isogenes.

길항미생물 Bacillus subtilis GG95를 이용한 상추 균핵병의 생물학적 방제 (Biological Control of Lettuce Sclerotinia Rot by Bacillus subtilis GG95)

  • 이현주;김진영;이진구;홍순성
    • 한국균학회지
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    • 제42권3호
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    • pp.225-230
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    • 2014
  • 상추재배시 문제가 되고 있는 균핵병과 시들음병에 대한 미생물 방제제 개발을 위하여 병해가 발생된 상추 포장에서 미생물을 분리하고, 길항미생물을 선발하여 균의 특성을 조사하고 균핵병에 대한 예방효과를 검정한 결과는 다음과 같다. 경기도 주요 상추 재배지에서 균핵병은 10월부터 발생하여 다음해 5월까지 발생하였으며, 12월에는 최대 40%까지 발생하여 피해를 주고 있었다. 균핵병과 시들음병에 모두 억제효과가 있는 균주를 대치배양을 통해 선발하였다. 선발됨 균주는 Vitek 2의 BCL카드를 이용한 생화학적반응과 형태적 확인, 16s rRNA 분석을 통해 동정한 결과 Bacillus subtilis로 동정되었고 B. subtilis GG95로 명명하였다. B. subtilis GG95의 배양특성을 조사한 결과 온도 $25{\sim}30^{\circ}C$, 산도 7의 배양조건에서 배양이 잘 되었으며, 배양에 적정한 영양원은 탄소원 전분, 질소원 tryptone과 yeast extract를 무기염류 $MgCl_2$를 사용하였을 때 가장 잘 되었다. 영양원에 따라 균핵병과 시들음병에 대한 길항효과가 좋은 탄소원은 fructose, maltose였고 질소원은 peptone였으며, 무기염류는 균핵병은 $CaCl_2$, $K_2HPO_4$, 시들음병은 $MgSO_47H_2O$로 병원균에 대한 길항효과가 차이가 있었다. 상추 균핵병에 대한 B. subtilis GG95의 포장검정 결과 $1{\times}10^8cfu/mL$ 농도의 길항미생물 배양액을 포기당 10 mL씩 3회 관주하고 균핵병원균을 접종한 후 균핵병의 발병정도를 조사한 결과 88% 방제효과가 나타났다.

Effects of Dietary Thiazolidinedione Supplementation on Growth Performance, Intramuscular Fat and Related Genes mRNA Abundance in the Longissimus Dorsi Muscle of Finishing Pigs

  • Chen, X.;Feng, Y.;Yang, W.J.;Shu, G.;Jiang, Q.Y.;Wang, X.Q.
    • Asian-Australasian Journal of Animal Sciences
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    • 제26권7호
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    • pp.1012-1020
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    • 2013
  • The objective of this study was to investigate the effect of dietary supplementation with thiazolidinedione (TZD) on growth performance and meat quality of finishing pigs. In Experiment 1, 80 castrated finishing pigs (Large White${\times}$Landrace, BW = 54.34 kg) were randomly assigned to 2 treatments with 5 replicates of 8 pigs each. The experimental pigs in the 2 groups were respectively fed with a diet with or without a TZD supplementation (15 mg/kg). In Experiment 2, 80 castrated finishing pigs (Large White${\times}$Landrace, BW = 71.46 kg) were divided into 2 treatments as designed in Experiment 1, moreover, carcass evaluations were performed. The results from Experiment 1 showed that TZD supplementation could significantly decreased the average daily feed intake (ADFI) (p<0.05) during 0 to 28 d, without impairing the average daily gain (ADG) (p>0.05). In Experiment 2, the ADG was significantly increased by TZD supplementation during 14 to 28 d and 0 to 28 d (p<0.05) and the feed:gain ratio (F:G) was significantly decreased by TZD supplementation during 0 to 28 d (p<0.05). Compared with the control group, TZD group had significantly higher serum triglyceride (TG) concentration at 28h and serum high-density lipoprotein (HDL) levels at 14 d (p<0.05). Moreover, there was an apparent improvement in the marbling score (p<0.10) and intramuscular fat (IMF) content (p<0.10) of the longissimus dorsi muscle in pigs treated by TZD supplementation. Real-time RT-PCR analyses demonstrated that pigs of TZD group had higher mRNA abundance of $PPAR{\gamma}$ coactivator 1 (PGC-1) (p<0.05) and fatty acid-binding protein 3 (FABP3) (p<0.05) than pigs of control group. Taken together, these results suggested that dietary TZD supplementation could improve growth performance and increase the IMF content of finishing pigs through regulating the serum parameters and genes mRNA abundance involved in fat metabolism.

Effect of dietary supplementation with Spirulina on the expressions of AANAT, ADRB3, BTG2 and FASN genes in the subcutaneous adipose and Longissimus dorsi muscle tissues of purebred and crossbred Australian sheep

  • Kashani, Arash;Holman, Benjamin William Behrens;Nichols, Peter David;Malau-Aduli, Aduli Enoch Othniel
    • Journal of Animal Science and Technology
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    • 제57권3호
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    • pp.8.1-8.8
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    • 2015
  • Background: The demand for healthy, lean and consistent meat products containing low saturated fatty acid content and high quality polyunsaturated fatty acids (PUFA), especially long-chain (${\geq}C_{20}$) omega-3 PUFA, has increased in recent times. Fat deposition is altered by both the genetic background and dietary supplements, and this study aimed to assess the effect of dietary Spirulina supplementation levels on the mRNA expression patterns of genes controlling lipid metabolism in the subcutaneous adipose tissue (SAT) and Longissimus dorsi (ld) muscle of Australian crossbred sheep. Methods: Twenty-four weaned lambs belonging to four breeds under the same management conditions were maintained on ryegrass pasture and fed three levels of Spirulina supplement (control, low and high). In terms of nutrient composition, Spirulina is a nutrient-rich supplement that contains all essential amino acids, vitamins and minerals. It also is a rich source of carotenoids and fatty acids, especially gamma-linolenic acid (GLA) that infer health benefits. After slaughter, subcutaneous adipose tissue (SAT) and ld samples were subjected to mRNA extraction and reverse transcription using quantitative polymerase chain reaction (RT-qPCR) to assess the mRNA expression levels of the Aralkylamine N-acetyltransferase (AANAT), Adrenergic beta-3 receptor (ADRB3), B-cell translocation gene 2 (BTG2) and Fatty acid synthase (FASN) genes, which are associated with lipid metabolism. Results: Both low and high Spirulina supplementation levels strongly up-regulated the transcription of all the selected genes in both SAT and ld tissues (mostly in the subcutaneous adipose), but sheep breed and sex did not influence the gene expression patterns in these tissues. Conclusions: The evidence indicates that high Spirulina supplementation level resulted in a decrease in intramuscular fat content in Australian purebred and crossbred sheep due to the enhanced production of melatonin in sheep muscle tissues and strong up-regulation of mRNA expression of BTG2 in SAT which negatively affected fat deposition. In contrast, low Spirulina supplementation level strongly up-regulated the ADRB3 and FASN genes responsible for fat production. These findings are consistent with the observed phenotypic data suggesting that low Spirulina supplementation level can increase lamb production, with higher long-chain PUFA content.

Chronic persistent post-surgical pain following staging laparotomy for carcinoma of ovary and its relationship to signal transduction genes

  • Saxena, Ashok Kumar;Chilkoti, Geetanjali T;Chopra, Anand K;Banerjee, Basu Dev;Sharma, Tusha
    • The Korean Journal of Pain
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    • 제29권4호
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    • pp.239-248
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    • 2016
  • Background: The present study was undertaken to evaluate the incidence of chronic persistent post-surgical pain (CPPP) and the role of signal transduction genes in patients undergoing staging laparotomy for carcinoma ovary. Methods: The present observational study was undertaken following institutional ethical committee approval and informed consent from all the participants. A total 21 patients of ASA grade I to III with age 20-70 years, scheduled for elective staging laparotomy for carcinoma ovary were included. Patients were excluded if had other causes of pain, cognitive dysfunction or chronic neurological disorders. Statistical analysis of pool data was done using SPSS version-17. For various scales like GPE, PDQ, NPSI, the visual analogue scale (VAS), global perceived effect (GPE), the pain DETECT questionnaire (PDQ), and neuropathic pain symptoms inventory (NPSI), one factor repaeted measure ANOVA applied with simple contrast with baseline as on post-operative day 1 (considered as reference and compared with subsequent time-interval), and the P values were adjusted according to "Bonferroni adjustments". In patients with CPPP, the ${\Delta}ct$ values of mRNA expressions of genes at the end of postoperative day 90 were compared with the baseline control values by one factor repeated ANOVA. P value < 0.005 significant. Results: The present study demonstrates 38.1% (8 out of 21 patients) incidence of CPPP. The functional status and quality of life as were observed to be significantly diminished in all patients with chronic pain. An up-regulation in the mRNA expression of signal transduction and a positive correlation was noted between the mRNA expression of signal transduction genes and VAS score in all patients with CPPP at the end of postoperative day 90. Conclusions: The reported incidence of CPPP in patients with carcinoma ovary was 38.1%. An up-regulation and positive correlation between mRNA expression of signal transduction genes and VAS score depicts its potential role in the pathogenesis of CPPP.

Inhibition of mitoNEET induces Pink1-Parkin-mediated mitophagy

  • Lee, Seunghee;Lee, Sangguk;Lee, Seon-Jin;Chung, Su Wol
    • BMB Reports
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    • 제55권7호
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    • pp.354-359
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    • 2022
  • MitoNEET, a mitochondrial outer membrane protein containing the Asn-Glu-Glu-Thr (NEET) sequence, controls the formation of intermitochondrial junctions and confers autophagy resistance. Moreover, mitoNEET as a mitochondrial substrate undergoes ubiquitination by activated Parkin during the initiation of mitophagy. Therefore, mitoNEET is linked to the regulation of autophagy and mitophagy. Mitophagy is the selective removal of the damaged or unnecessary mitochondria, which is crucial to sustaining mitochondrial quality control. In numerous human diseases, the accumulation of damaged mitochondria by impaired mitophagy has been observed. However, the therapeutic strategy targeting of mitoNEET as a mitophagy-enhancing mediator requires further research. Herein, we confirmed that mitophagy is indeed activated by mitoNEET inhibition. CCCP (carbonyl cyanide m-chlorophenyl hydrazone), which leads to mitochondrial depolarization, induces mitochondrial dysfunction and superoxide production. This, in turn, contributes to the induction of mitophagy; mitoNEET protein levels were initially increased before an increase in LC3-II protein following CCCP treatment. Pharmacological inhibition of mitoNEET using mitoNEET Ligand-1 (NL-1) promoted accumulation of Pink1 and Parkin, which are mitophagy-associated proteins, and activation of mitochondria-lysosome crosstalk, in comparison to CCCP alone. Inhibition of mitoNEET using NL-1, or mitoNEET shRNA transfected into RAW264.7 cells, abrogated CCCP-induced ROS and mitochondrial cell death; additionally, it activated the expression of PGC-1α and SOD2, regulators of oxidative metabolism. In particular, the increase in PGC-1α, which is a major regulator of mitochondrial biogenesis, promotes mitochondrial quality control. These results indicated that mitoNEET is a potential therapeutic target in numerous human diseases to enhance mitophagy and protect cells by maintaining a network of healthy mitochondria.