• 제목/요약/키워드: Population heterogeneity

검색결과 137건 처리시간 0.023초

Single cell heterogeneity in human pluripotent stem cells

  • Yang, Seungbok;Cho, Yoonjae;Jang, Jiwon
    • BMB Reports
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    • 제54권10호
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    • pp.505-515
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    • 2021
  • Human pluripotent stem cells (hPSCs) include human embryonic stem cells (hESCs) derived from blastocysts and human induced pluripotent stem cells (hiPSCs) generated from somatic cell reprogramming. Due to their self-renewal ability and pluripotent differentiation potential, hPSCs serve as an excellent experimental platform for human development, disease modeling, drug screening, and cell therapy. Traditionally, hPSCs were considered to form a homogenous population. However, recent advances in single cell technologies revealed a high degree of variability between individual cells within a hPSC population. Different types of heterogeneity can arise by genetic and epigenetic abnormalities associated with long-term in vitro culture and somatic cell reprogramming. These variations initially appear in a rare population of cells. However, some cancer-related variations can confer growth advantages to the affected cells and alter cellular phenotypes, which raises significant concerns in hPSC applications. In contrast, other types of heterogeneity are related to intrinsic features of hPSCs such as asynchronous cell cycle and spatial asymmetry in cell adhesion. A growing body of evidence suggests that hPSCs exploit the intrinsic heterogeneity to produce multiple lineages during differentiation. This idea offers a new concept of pluripotency with single cell heterogeneity as an integral element. Collectively, single cell heterogeneity is Janus-faced in hPSC function and application. Harmful heterogeneity has to be minimized by improving culture conditions and screening methods. However, other heterogeneity that is integral for pluripotency can be utilized to control hPSC proliferation and differentiation.

소척추동물군집에서 개체군 변동과 생물다양성 유지를 위한 서식지 이질성의 기능 (Function of Habitat Heterogeneity for the Biodiversity and Demography of Population in Small Mammal Community)

  • Lee, Sang Don
    • The Korean Journal of Ecology
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    • 제18권4호
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    • pp.512-523
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    • 1995
  • The central theme of Habital heterogeneity is to provide animals with habital complexity or structural diversity and to allow resource partitioning among individuals. In turn, the leads to population stability because prey can escape more easily with more hiding places causing less population fluctuation. Species diversity is characterized due to more potential niches both horizontally and verticall. Empirically, in homogeneous habitats population was less abundant, reproduction and survival were lower, spacing behavior, competition and dispersal were higher than in heterogeneous habitats. The results imply that diversity and conservation of species can be maintained through providing heterogeneous habitats.

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소척추동물군집에서 개체군 변동과 생물다양성 유지를 위한 서식지 이질성의 기능 (Function of Habitat Heterogeneity for the Biodiversity and Demography of Population in Small Mammal Community)

  • 이상돈
    • The Korean Journal of Ecology
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    • 제18권4호
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    • pp.513-513
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    • 1995
  • 분리된 자원을 공급한다. 소척추동물과 포식자의 관계에서 동질로화된 서식지는 소척추동물의 생태적 지위를 단일화시켰으며, 숨을 곳의 급격한 감소로 인해 소척추동물의 군집 밀도를 큰 규모로 변동시킨다. 동질화된 서식지는 또한 서식지 구조의 복잡성을 사라지게 함으로써 종의 다양성이 감소된다는 연구결과를 검토하였다. 실험적연구에서 동질화된 서식지는 소척추동물의 서식밀도와 안정성의 감소, 세력권의 증가로 인한 종간경쟁, 분산의 증가로 특징지워졌다. 따라서 서식지의 이질성 유지는 종의 다양성과 보존의 기능을 높여주는데 기여함을 알게 되었다.

Variation in Germination and Seedling Growth of Taraxacum officinale Seeds Harvested from Different Seasons

  • Yang, Hyo-Sik
    • The Korean Journal of Ecology
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    • 제24권6호
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    • pp.353-357
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    • 2001
  • Differential response of genotypes to temporal environmental heterogeneity may contribute to the long-term persistence of these genotypes within a population. In this experiment, we experimentally tested whether groups by season interactions for germination and seedling growth can explain genetic variability within the population. To determine whether seeds collected during the four seasons respond differentially to temperature treatments, two-way ANOVA was performed. This study indicates that seasonal environments have large effects on demography. Groups within populations respond differentially to seasonal environments by influencing population growth that may in turn influence community composition. Most importantly, the study showed that temporal heterogeneity in the environment might functions as a mechanism that maintains within-population genetic diversity.

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Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing

  • Choi, Yoon Ha;Kim, Jong Kyoung
    • Molecules and Cells
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    • 제42권3호
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    • pp.189-199
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    • 2019
  • Cell-to-cell variability in gene expression exists even in a homogeneous population of cells. Dissecting such cellular heterogeneity within a biological system is a prerequisite for understanding how a biological system is developed, homeostatically regulated, and responds to external perturbations. Single-cell RNA sequencing (scRNA-seq) allows the quantitative and unbiased characterization of cellular heterogeneity by providing genome-wide molecular profiles from tens of thousands of individual cells. A major question in analyzing scRNA-seq data is how to account for the observed cell-to-cell variability. In this review, we provide an overview of scRNA-seq protocols, computational approaches for dissecting cellular heterogeneity, and future directions of single-cell transcriptomic analysis.

Heterogeneous Habitat for Increasing Biological Diversity

  • Lee, Sang-Don
    • 환경생물
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    • 제21권4호
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    • pp.337-341
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    • 2003
  • Habitat heterogeneity can enhance biological diversity by providing variation in structural diversity. This paper reviewed heterogeneous habitat serves as a population stability and superior demographic performance (e.g., high density, survivorship, reproductive rate) can be observed compared with organisms with inferior demographic performance. The idea of habitat variation has been further developed in modelling. Furthermore the size and configuration (distribution) of a patch (of a particular habitat type) become effective for the stability of population through hiding places and food resources. Species diversity is related to habitat complexity that provides structural diversity to ground -dwelling organisms. Finally coarse woody debris can enhance habitat complexity thus stabilizing population fluctuation and increasing survivorship.

Identification of ERBB pathway-activated cells in triple-negative breast cancer

  • Cho, Soo Young
    • Genomics & Informatics
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    • 제17권1호
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    • pp.3.1-3.4
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    • 2019
  • Intratumor heterogeneity within a single tumor mass is one of the hallmarks of malignancy and has been reported in various tumor types. The molecular characterization of intratumor heterogeneity in breast cancer is a significant challenge for effective treatment. Using single-cell RNA sequencing (RNA-seq) data from a public resource, an ERBB pathway activated triple-negative cell population was identified. The differential expression of three subtyping marker genes (ERBB2, ESR1, and PGR) was not changed in the bulk RNA-seq data, but the single-cell transcriptomes showed intratumor heterogeneity. This result shows that ERBB signaling is activated using an indirect route and that the molecular subtype is changed on a single-cell level. Our data propose a different view on breast cancer subtypes, clarifying much confusion in this field and contributing to precision medicine.

크기가 1인 표본들로 구성된 집단에 기반한 모평균의 차이를 검정하기 위한 최소 조합 t-검정 방법 (A minimum combination t-test method for testing differences in population means based on a group of samples of size one)

  • 허미영;임창원
    • 응용통계연구
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    • 제30권2호
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    • pp.301-309
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    • 2017
  • 일반적으로 각 N개의 모집단에서 2개 이상의 표본이 추출되었을 때, $H_0:{\mu}_1={\cdots}={\mu}_N$의 가설에 대하여 검정할 수 있지만 각 모집단으로부터 표본이 한 개씩 추출된다면 ${\bar{X}}$가 존재하지 않으므로 모평균의 차이 검정은 불가능하다. 하지만 하나씩 추출된 표본으로 구성된 집단을 두 집단으로 나누어 임의의 평균을 생성함으로써 평균의 차이를 비교한다면 표본들 사이에 존재할 수 있는 이질성을 파악할 수 있다. 따라서 우리는 두 집단으로 나눌 수 있는 조합의 수만큼 평균 차이를 검정할 수 있는 최소 조합 t-검정 방법을 제안하고자 한다. 최종적으로 본 논문에서는 한 개씩 추출된 표본들 사이의 이질성을 확인하기 위하여 평균 차이를 검정할 수 있는 방법을 제안하였고 모의실험 연구를 통해 성능을 확인하였고 실제 자료 분석을 통해 결과를 도출하였다.

유행성 출혈형 폐염양 질환의 병원체에 관한 연구 (Comparative Analysis of Leptospira Isolated in Korea and Leptospira from ATCC)

  • 김주덕;이태윤;이원영;이봉기
    • 대한미생물학회지
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    • 제21권2호
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    • pp.191-204
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    • 1986
  • Leptospira isolated from the patients with so called epidemic pulmonary hemorrhagic fever were comparatively studied with standard strains obtained from ATCC. The specific aim of this study was to clarify the morphologic heterogeneity of the isolates, i. e., coexistence of spiral forms in both handness, right and left, rod and spherical forms in their population by comparing them with those of the ATCC strains. No differences between our strains and ATCC strains were noticed in their growth characteristics, responses to the culture media, temperature, antibiotics and antifungal agents. Furthermore, the morphologic heterogeneity had been repeatedly observed even in cultures of standard ATCC strains, which had been noticed in the cultures of bacteria isolated in this laboratory. The serologic analysis of our isolates demonstrated that the bacteria reacted with L. icterohaemorrhagiae and L. australis regardless their differences in time of isolation(1984, 1985). Thus, it was concluded that the spiral bacteria isolated in this laboratory are Leptospira of a new serovar which still remained to be determined. And the previous reports on the morphology of the Leptospira, which described that the Leprospira population has only spiral forms with right. handed coils might be reconsidered.

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Exploring the Relationship between Place and Crime Using Spatial Econometrics Model

  • Lee, Soochang;Kim, Daechan
    • International Journal of Advanced Culture Technology
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    • 제9권2호
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    • pp.32-38
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    • 2021
  • The purpose of this study is to examine the spatial characteristics of violent and burglary crimes in South Korea. Violent crimes and burglary crimes depend on a spatial setting with good conditions for their criminal purposes. This study defines population density, racial heterogeneity, types of houses, and density of commercial facilities as variables of place affecting crime in cities and counties. The study collects data from 229 cities in Korea to analyze the effect of spatial characteristics on crime. We conduct additional analyses to meet the statistical requisites of the spatial econometrics model using the open-source software R and GeoDa 1.12.1.129. From the analytical result, population density, racial heterogeneity, apartments, and commercial areas relate to crime occurrence. We suggest the implication of the theoretical and practical contributions to the relationship between place and crime.