• Title/Summary/Keyword: Phylogenetic analyses

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Morphological and Molecular Characterization of Podosphaera Powdery Mildew on Fatoua villosa in Korea

  • In-Young Choi;Lamiya Abasova;Joon-Ho Choi;Chong-Kyu Lee;Hyeon-Dong Shin
    • The Korean Journal of Mycology
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    • v.50 no.3
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    • pp.243-248
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    • 2022
  • In Japan and China, Podosphaera pseudofusca causes powdery mildew in Fatoua villosa. During a taxonomic revision of Korean powdery mildew fungi, isolates newly collected from F. villosa were studied. Through morphological examination and molecular phylogenetic analyses of the internal transcribed spacer region and large subunit gene of rDNA, the powdery mildew fungus was identified as Podosphaera xanthii. In this study, we propose the merging of P. pseudofusca sensu Braun into the P. xanthii complex. To the best of our knowledge, this is the first report of Podosphaera powdery mildew on F. villosa in Korea.

Isolation and Characterization of Previously Undescribed Seventeen Fungal Species Belonging to the order Hypocreales in Korea

  • Jaeduk Goh;Yoosun Oh;Young-Hwan Park;Hye Yeon Mun;Sangkyu Park;Wonsu Cheon
    • The Korean Journal of Mycology
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    • v.50 no.1
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    • pp.1-29
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    • 2022
  • Hypocreales is one of the largest orders within the class Sordariomycetes in Ascomycota. Several species of this order are cosmopolitan and have a broad range of habitats. Here, we isolated several fungal strains from environmental samples, including freshwater sediment and plant litter. The strains were identified via molecular and phylogenetic analyses of rDNA and other DNA markers, such as TUB, RPB2, and EF1. The morphological characteristics of the fungi were investigated using microscopy, and culture characteristics were assessed from their growth on several media. We identified 17 species previously unrecorded in Korea: Dactylonectria hordeicola, Flavocillium bifurcatum, Fusarium luffae, Ilyonectria ilicicola, Ilyonectria qitaiheensis, Ilyonectria robusta, Lecanicillium aphanocladii, Nectria ulmicola, Neonectria lugdunensis, Ovicillium oosporum, Pseudonectria foliicola, Sarocladium spinificis, Scolecofusarium ciliatum, Trichoderma appalachiense, Trichoderma subviride, Trichoderma taiwanense, and Trichoderma tsugarense.

Erysiphe quercicola Causing Powdery Mildew on Quercus rubra in Korea

  • Young-Joon Choi;Jun Hyuk Park;In-Young Choi;Lamiya Abasova;Joon-Ho Choi;HyeonDong Shin
    • The Korean Journal of Mycology
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    • v.50 no.2
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    • pp.137-141
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    • 2022
  • In Korea, powdery mildew has been observed on Quercus rubra, commonly called the northern red oak tree. Based on its morphological and molecular phylogenetic analyses, the fungal agent was identified as Erysiphe quercicola, but it was distinct from the other four Erysiphe species, specialized to Quercus species. This is the first confirmed report on the identity of powdery mildew found on Q. rubra in Korea. This finding can help understand the host expansion of E. quercicola and the biodiversity of powdery mildew on Quercus species.

Erysiphe convolvuli, a Powdery Mildew Occurring on Convolvulus arvensis in Korea

  • In-Young Choi;Young-Eun Na;Lamiya Abasova;Joon-Ho Choi;Hyeon-Dong Shin
    • The Korean Journal of Mycology
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    • v.50 no.1
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    • pp.55-59
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    • 2022
  • Anamorph of a powdery mildew was collected from Convolvulus arvensis (Convolvulaceae) in 2021 in Korea. Based on the morphological examination and molecular phylogenetic analyses of the internal transcribed spacer and large subunit rDNA gene, the powdery mildew was identified as Erysiphe convolvuli. This powdery mildew species is commonly found in Europe and North America, but rarely in East Asia. The holomorph of this powdery mildew was first recorded on Calystegia hederacea in Korea. Conclusively, this is the first report of E. convolvuli on C. arvensis and the second record of this powdery mildew species in Korea.

First Report of Anthracnose Disease Caused by Colletotrichum gloeosporioides in Stonecrop

  • Jeon, Chang Wook;Kwak, Youn-Sig
    • Journal of agriculture & life science
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    • v.50 no.5
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    • pp.251-255
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    • 2016
  • In year of 2013, anthracnose disease symptoms were observed on stem of stonecrop in a plant resource field, Southern Forest Resource Research Center, Jinju, South Korea. The disease symptoms were appeared 2-5 cm smudged irregular black spot color on the plant stems. Suspected pathogen was isolated from the lesion with surface sterilization method and identified it as Colletotrichum gloeosporioides by morphological characteristics and phylogenetic analyses. Artificially inoculated the isolated pathogen led to the similar disease symptom as originally observed in the field. The fungal pathogen was re-isolated from the inoculated lesion and it exhibited the same characteristics compared to the original isolate. This is the first report of anthracnose of stonecrop grown in open fields, caused by Colletotrichum gloeosporioides in Korea.

Didymella gigantis sp. nov. Causing Leaf Spot in Korean Angelica

  • Gyo-Bin Lee;Ki Deok Kim;Weon-Dae Cho;Wan-Gyu Kim
    • Mycobiology
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    • v.51 no.6
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    • pp.393-400
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    • 2023
  • During a disease survey in October 2019, leaf spot symptoms with a yellow halo were observed on Korean angelica (Anglica gigas) plants grown in fields in Pyeongchang, Gangwon Province, Korea. Incidence of diseased leaves of the plants in the investigated fields ranged from 10% to 60%. Morphological and cultural characteristics of two single-spore isolates from the leaf lesions indicated that they belonged to the genus Didymella. Molecular phylogenetic analyses using combined sequences of LSU, ITS, TUB2, and RPB2 regions showed distinct clustering of the isolates from other Didymella species. In addition, the morphological and cultural characteristics of the isolates were somewhat different from those of closely related Didymella spp. Therefore, the novelty of the isolates was proved based on the investigations. Pathogenicity of the novel Didymella species isolates was confirmed on leaves of Korean angelica plants via artificial inoculation. This study reveals that Didymella gigantis sp. nov. causes leaf spot in Korean angelica.

Two Previously Unrecorded Fungal Species Isolated from Muui Island in Korea

  • Soobin Shin;Hosung Jeon;Sieun Kim;Hyun-Ju Noh;Jong Won Jo;Kyunghun Min;Hokyoung Son
    • Mycobiology
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    • v.51 no.6
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    • pp.410-416
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    • 2023
  • Fungi are cosmopolitan and they occupy diverse niches as consumers, producers, and decomposers. They play critical roles in the environment by enabling nutrient cycling and generating a plethora of secondary metabolites. This study aimed to identify and characterize fungal strains isolated from diverse sources on Muui Island, Republic of Korea. In 2023, a total of 86 fungal strains were collected and examined. Investigation of the morphological features and phylogenetic analyses of multiple barcode loci identified one putative novel species and two species previously unrecorded in the Republic of Korea: Colletotrichum sp., Colletotrichum guizhouense, and Fusarium brachygibbosum. This study provides a comprehensive description of their molecular phylogenies and morphological characteristics. These findings will contribute to the existing knowledge about fungal species in the Republic of Korea and future research on the fungal diversity on Muui Island.

Didymella acutilobae sp. nov. Causing Leaf Spot and Stem Rot in Angelica acutiloba

  • Gyo-Bin Lee;Ki Deok Kim;Weon-Dae Cho;Wan-Gyu Kim
    • Mycobiology
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    • v.51 no.5
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    • pp.313-319
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    • 2023
  • During disease surveys of Angelica acutiloba plants in Korea, leaf spot symptoms were observed in a field in Andong in July 2019, and stem rot symptoms in vinyl greenhouses in Yangpyeong in April 2020. Incidence of leaf spot and stem rot of the plants ranged from 10 to 20% and 5 to 30%, respectively. Morphological and cultural characteristics of fungal isolates from the leaf spot and stem rot symptoms fitted into those of the genus Phoma. Molecular phylogenetic analyses of two single-spore isolates from the symptoms using concatenated sequences of LSU, ITS, TUB2, and RPB2 genes authenticated an independent cluster from other Didymella (anamorph: Phoma) species. Moreover, the isolates showed different morphological and cultural characteristics in comparison to closely related Didymella species. These discoveries confirmed the novelty of the isolates. Pathogenicity of the novel Didymella species isolates was substantiated on leaves and stems of A. acutiloba through artificial inoculation. Thus, this study reveals that Didymella acutilobae sp. nov. causes leaf spot and stem rot in Angelica acutiloba.

Characterization of Ascomycetous Yeast Species Wickerhamomyces sp. GW1-4 and Archaeorhizomyces sp. YB4-103 isolated from Soil (토양에서 분리한 자낭균 효모 Wickerhamomyces sp. GW1-4와 Archaeorhizomyces sp. YB4-103의 특성)

  • Ji Yun Son;Myung Kyum Kim
    • The Korean Journal of Mycology
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    • v.51 no.4
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    • pp.361-371
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    • 2023
  • The study was undertaken to isolate and characterize wild yeast strains from soil samples collected in Seoul, Korea. Among the 19 yeast strains obtained, 17 were previously recorded species. The remaining two strains, Wickerhamomyces sp. GW1-4 and Archaeorhizomyces sp. YB4-103 were new species candidates. The genomic and microbiological characteristics of GW1-4 and YB4-103 were investigated. Phylogenetic analyses based on the 26S rRNA gene sequences and internal transcribed sequences, GW1-4 and YB4-103, represent a distinct lineage within the family Phaffomycetaceae and Archaeorhizomycetaceae, respectively. The GW1-4 and YB4-103 strains had the highest sequence homology with Wickerhamomyces xylosivorus NBRC 111553T (88.97%) and Archaeorhizomyces finlayi CBS 128710T (87.55%), respectively.

Three new records of mushroom species from Hangyeong-Andeok Gotjawal, South Korea

  • Seung-Hak Lee;Dae-Ju Oh;Weon-Jong Yoon;Yong-Hwan Jung
    • The Korean Journal of Mycology
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    • v.51 no.3
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    • pp.191-204
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    • 2023
  • This study introduces one specimen each of the genera Gymnopilus, Marasmius, and Mycena as an unrecorded species found in the Hwasun Gotjawal and Jeju Gotjawal Provincial Park of the Hangyeong-Andeok terrain, South Korea. Morphological analyses of macroscopic and microscopic features, and molecular analysis of the nuclear ribosomal internal transcribed spacer region were conducted to identify the specimens. Our results indicated that the newly identified specimens were Gymnopilus dilepis, Marasmius tenuissimus, and Mycena seminau. Here, we describe these newly identified mushroom species and provide baseline data on their diversity in Gotjawal, South Korea.