• Journal of KIISE:Databases
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• v.30 no.6
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• pp.573-584
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• 2003

Recent massive data generation by genomics and proteomics requires bioinformatic tools to extract the biological meaning from the massive results. Here we introduce ROSPath, a database system to deal with information on reactive oxygen species (ROS)-mediated cell signaling pathways. It provides a structured repository for handling pathway related data and tools for querying, displaying, and analyzing pathways. ROSPath data model provides the extensibility for representing incomplete knowledge and the accessibility for linking the existing biochemical databases via the Internet. For flexibility and efficient retrieval, hierarchically structured data model is defined by using the object-oriented model. There are two major data types in ROSPath data model: ‘bio entity’ and ‘interaction’. Bio entity represents a single biochemical entity: a protein or protein state involved in ROS cell-signaling pathways. Interaction, characterized by a list of inputs and outputs, describes various types of relationship among bio entities. Typical interactions are protein state transitions, chemical reactions, and protein-protein interactions. A complex network can be constructed from ROSPath data model and thus provides a foundation for describing and analyzing various biochemical processes.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.17 no.9
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• pp.2082-2090
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• 2013

As rehabilitation psychology analysis system which manages examination information becoming more popular, interoperability, portability and security are becoming major concerns of modern computing. We propose a security model on the type information based access control system for rehabilitation psychology analysis that can enhance both security and availability by separating the functions delivered from object-oriented databases to solve these problems. We apply the access control model specifically to enhancement of security system and also perform a test to verify the security and availability of our model.

• Journal of KIISE:Software and Applications
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• v.26 no.3
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• pp.365-379
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• 1999

본 논문에서는 객체지향 데이터베이스의 클래스 계층에 대한 색인기법으로 이차원 색인구조를 이용하여 조율 가능한 이차원 클래스 색인기법인 2D-CHI를 제안한다. 2D-CHI 에서는 색인된 속성의 키값 도메인과 클래스 식별자 도메인으로 구성된 이차원 도메인상의 색인엔트리들에 대한 클러스터링 문제를 다룬다. 클러스터링 특성이 하나의 속성에 의해서 독점되는 B+-Tree 와 같은 일차원 색인구조를 이용하는 기존의 클래스 색인기법들은 특정 형태의 질의에 대해서만 적합한 색인기법들로서 다양한 형태의 질의들로 구성된 질의 패턴에 대해서 적절하게 대응하지 못한다. 2D-CHI에서는 질의 피턴에 따라 키값 도메인과 클래스 식별자 도메인 사이에서 색이 엔트리들의 클러스터링 정도를 조정함으로써 질의처리의 성능을 향상시킨다. 2D-CHI 의 성능평가를 위하여, 먼저 데이터의 균일 분포를 가정으로 비용 모델을 정립하여 기존의 색인기법들과 색인의 성능을 비교한다. 그리고, 계층 그리드 파일을 이용하여 구현한 2D-CHI의 실험으로 비용 모델을 검증하며, 다양한 실험을 통하여 데이터의 분포와 주어진 질의 형태에 따라 최적의 이차원 클래스 계층 색인구조를 구성할 수 있음을 보인다.

• The KIPS Transactions:PartD
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• v.18D no.1
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• pp.57-66
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• 2011

Recently, the necessity of new methods of spatial data integration and analysis in CRM has been increased since it is acknowledged that about eighty percent of all data stored in corporate databases has a spatial component. But conventional CRM systems are either incapable of managing spatial data or are not user-friendly when doing so. This paper has designed and implemented spatially-enabled integration management system that can manage consistently both enterprise and spatial data through a legacy CRM system and object-oriented database and additionally support spatial analysis and map visualization for a gCRM. Through implementation, it is demonstrated that the proposed system can facilitate effectively spatial data management and analysis in a legacy CRM system.

• Proceedings of the KSRS Conference
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• 2004.10a
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• pp.99-102
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• 2004

Recently according to developing of bioinformatics techniques, there are a lot of researches about large amount of biological data. And a variety of files and databases are being used to manage these data efficiently. However, because of the deficiency of standardization there are a lot of problems to manage the data and transform one into the other among heterogeneous formats. We are interested in integrating. saving, and managing gene and protein sequence data generated through sequencing. Accordingly, in this paper the goal of our research is to implement the system to manage sequence data and transform a sequence file format into other format. To satisfy these requirements, we adopt BSML (Bioinformatics Sequence Markup Language) as the standard to manage the bioinformatics data. And then we integrate and store the heterogeneous 리at file formats using BSML schema based DTD. And we developed the system to apply the characteristics of object-oriented database and to process XPath query, one of the efficient structural query. that saves and manages XML documents easily.

• Journal of KIISE:Databases
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• v.28 no.1
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• pp.1-14
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• 2001

중대한 산업용 소프트웨어가 동작하는 공유된 객체지향 데이터베이스를 안전하게 변경하기 위해서는, 그 공유 데이터베이스를 변경할 동안 데이터베이스 위에서 작동하는 기존의 응용 프로그램이 지속적으로 작동되어야 한다. 데이터베이스 변경을 필요로 하는 새로운 요구사항은 새 응용 프로그램의 추가, 기존 응용 프로그램의 기능 확장, 초기 디자인 에러 수정 등으로 인하여 발생할 수 있다. 우리는 한 사람의 사용자가 다른 사용자에게 악영향을 주지 않고 데이터베이스 스키마를 변경할 수 있게 하여 이 문제를 해결하는 투명한 스키마 진화(TSE: Transparent Schema Evolution) 방법론을 소개한다. 이 방법론은 기존의 스키마를 직접 변경하는 대신 스키마 변경 연산의 의미를 반영하는 데이터베이스 큐를 공유 객체지향 데이터베이스 상에 생성하여 투명한 진화를 달성한다. 데이터베이스의 용량을 증가시키지 못하는 뷰 메카니즘의 한계를 극복하기 위하여 이 방법론은 데이터베이스 용량 증가 연산에 대하여 다음의 새 단계로 정렬된다. (1) 기저의 베이스 스키마는 데이터베이스 용량 증가를 위해 물리적으로 변호한다. (2) 데이터베이스 변경의 의미를 달성하는 목표 뷰가 위의 변화된 베이스 스키마로부터 생성된다. (3) 변화 이전의 베이스 스키마는 데이터베이스 뷰로서 재 구축된다. 이로써 기존의 다른 사용자가 정의한 데이터 인터페이스가 보존된다. 우리는 객체-지향 뷰 기술을 이용하여 스키마 변화 연산을 구현함으로써 TSE 방법론의 구현가능성(feasibility)을 확인하였다. 표준적인 객체-지향 뷰 모델이 정의되고 상용 객체-지향 데이터베이스인 잼스톤(Gemstone) 위에 구현되었다. 그 뷰 모델은 갱신 의미(semantic) 정의를 그 뷰가 베이스 스키마의 갱신 의미를 보존하도록 정의하였다. 그러한 뷰는 사용자가 그들이 실제로는 베이스 스키마가 아니라 뷰에서 작업하고 있다는 사실을 모르게 하기 위하여 TSE에서 필요하다.

• Journal of KIISE:Databases
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• v.29 no.2
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• pp.110-118
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• 2002

This paper presents a 3-D graphic database system based on XML that supports content-based retrievals of 3-D images, Most of graphics application systems are currently centered around the processing of 2-D images and research works on 3-D graphics are mainly concerned about the visualization aspects of 3-D image. They do not support the semantic modeling of 3-D objects and their spatial relations. In our data model, 3-D images are represented as compositions of 3-D graphic objects with associated spatial relations. Complex 3-D objects are mode]ed using a set of primitive 3-D objects rather than the lines and polygons that are found in traditional graphic systems. This model supports content-based retrievals of scenes containing a particular object or those satisfying certain spatial relations among the objects contained in them. 3-D images are stored in the database as XML documents using 3DGML DTD that are developed for modeling 3-D graphic data. Finally, this paper describes some examples of query executed in our Web-based prototype database system.

• Journal of KIISE:Databases
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• v.27 no.2
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• pp.227-237
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• 2000

A Web database System is a large-scaled multimedia application system that has multimedia processing facilities and cooperates with relational/Object-Oriented DBMS. Conventional hypertext modeling methods and DB gateway have limitations for Web database because of their restricted versatile presentation abilities and inefficient concurrency control caused by bottleneck in cooperation processing. Thus, we suggest a Dynamic Navigation Model & Virtual Graph Structure. The Dynamic Navigation Model supports implicit query processing and dynamic creation of navigation spaces, and introduce node-link creation rule considering navigation styles. We propose a mapping methodology between the suggested hypertext model and the relational data model, and suggest a dynamic allocation scheduling technique for query processing server based on weighted value. We show that the proposed technique enhances the retrieval performance of Web database systems in processing complex queries concurrently.

• Journal of KIISE:Databases
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• v.27 no.1
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• pp.113-128
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• 2000

The adaptation of spatial view is to update materialized view objects when apatial view is redefined. There are tow kinds of adaptation : incremental updates and recomputation. The incremental update changes related view objects and it is more efficient than the recomputation which evaluates redefined view defining query because spatial view is defined by spatial query including high cost spatial operator. This paper proposes the several incremental update methods according to the types of changing the definition of a spatial view. There are two kinds of incremental view adaptation : the method of using only the existing view objects and the view derivation relationship between view objects and their sources. This incremental update is achieved by updating the current materialized view objects or by inserting new materialized view objects. Spatial view adapter is implemented and tested on top of the object oriented geographic information system. This paper evaluates performance between the recomputation and incremental update method through real data.