• 한국미생물·생명공학회지
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• 제41권2호
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• pp.153-159
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• 2013

Sinorhizobium meliloti 1021 (KCTC 2353) 유전체로부터 mannitol dehydrogenase (SmMDH)로 추정되는 유전자를 클로닝하고, 대장균에서 대량 발현하였다. 이 유전자는 494개의 아미노산(약 54 kDa)을 암호화하는 1,485 bp의 염기로 구성되며, 기존에 보고된 long-chain dehydrogenase/reductase 계열 MDH 효소들과 약 35-55%의 아미노산 서열상동성을 나타내었다. 재조합 SmMDH의 최적 반응온도는 $40^{\circ}C$이며, pH 7.0의 조건에서 최대의 D-fructose 환원활성, 그리고 pH 9.0에서 최대의 D-mannitol 산화활성을 보였다. 특히, 이 효소는 $NAD^+/NADH$ 조효소의 존재 하에서 산화 환원 활성을 나타내며, $NAD^+/NADPH$는 조효소로 이용하지 못하였다. 결론적으로 SmMDH는 전형적인 $NAD^+/NADH$-의존형 mannitol dehydrogenase (EC 1.1.1.67)임을 확인하였다.

• 한국식품영양과학회지
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• 제26권4호
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• pp.682-688
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• 1997

본 논문에서는 당뇨에 의한 CYP2El의 유도와 이에 따른 지질과 산화의 증가에 비타민 C가 미치는 영향을 간 소포체와 미토콘드리아에서 알아보고자 하였다. Cy-tochrome P450의 함량은 간 소포체와 미토콘드리아 모두에서 정상과 당뇨간에 차이를 보이지 않았고, 비타민 C의 공급은 영향이 없었다. Superoxide anion에 의한 지질과 산화에 가장 큰 영향을 끼친다는 CYP2El에 대하여 immunoblotting으로 그 함량을 알아본 결과, 간 소포체 CYP2El이 당뇨에서 증가하고 비타민 C의 보강은 50mg/d의 공급으로도 현저한 감소를 보여 간 소포체 P450의 함량과는 다른 결과를 나타냈다. 간 미토콘드리아의 경우 소포체와 동량(20$\mu\textrm{g}$)의 단백질을 loading하였는데 CYP2El의 발현을 볼 수 없었다. 간 소포체와 미토콘드리아 NDMA demethylase의 활성이 정상군과 당뇨군에서 유의적인 차이를 보이지 않았으나, 250mg/d의 비타민 C 공급시 간 소포체에서는 유의적으로, 간 미토콘드리아에서는 유의적이지는 않으나 감소하였다. NDMA demethylase의 활성은 CYP1El의 함량을 반영한다고 알려져 있는데 본 연구에서는 동일한 pattern으로 진행되지는 않은 듯하다. NADPH-cyto-chrome c reductase의 활성은 NDMA demethylase의 활성과 양의 상관관계를 보였다. 따라서, 비타민 C의 공 급은 당뇨에 의한 CYP2El의 유도를 감소시키고 NDMA demethylase, NADPH-cyto-chrome c reductase와 같은 약물대사계 효소의 활성을 감소시켜 지질과 산화를 낮출 것으로 사료된다 그러나, 비타민 C의 공급량에 따라 조금씩 다른 결과를 보여 당뇨에 있어 가장 좋은 효과를 보일 수 있는 최적의 비타민 C 보강량을 결정하는 연구가 요구된다. 당뇨군에서 지질과 산화의 지표인 thiobar-bituric acid reactive substances(TBARS)의 함량이 간 소포체에서 유의적으로 증가하였고, 비타민 C의 공급랑에 의존하여 TBARS의 함량이 감소하였다. TBARS의 함량은 NDMA demethylase의 활성과 양의 상관관계를 보여 CYP2E1이 당뇨의 지질과 산화에 영향을 끼친다고 생각된다. 이러한 비타민 C의 항산화 효과는 비타민 C 자체의 항산화 능력, 비타민 E와 glutathione 같은 다른 항산화제의 절약 효과, CYP2El의 유도 저하를 통하는 것으로 생각되며 그중 어떤 것에 가장 큰 영향을 받는 지는 아직 알려지지 않았고 더욱 많은 연구가 요구된다.

• 한국작물학회지
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• 제40권4호
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• pp.504-511
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• 1995

SOD(superoxide dismutase)는 유해 활성산소에 의한 생리적 장해를 방지하는 방어기작의 한 구성요소이다. 들깨잎 SOD의 특성을 알아보기 위한 NBT(nitro blue tetrazolium) 환원법 을 이용하여 들깨와 자소잎의 SOD동위효소의 종류와 활성 및 이들의 항산화 활성을 Fe$^{2+}$/ascorbate, Fe$^{3+}$ -ADP/NADPH첨가제를 처리하여 조사하였다. 들깨잎에는 품종에 따라 3~4개의 주요 SOD동위효소가 있었다. SOD는 함유하고 있는 금속조효소에 따라 3종류로 분류되는데, 들깨잎에는 두개의 Cu/ZnSOD와 두개의 FeSOD을 함유하고 있었으나, 자소잎은 단지 Cu/ZnSOD만을 함유하고 있었다. Cu/ZnSOD는 들깨 품종에 따른 차이가 없었으나, FeSOD는 분자량이 다른 두개의 FeSOD동위효소의 존재 양상이 품종에 따라 차이를 나타내었으며, SOD활성 및 항산화 활성도 품종에 따라 비교적 큰 차이를 보였다. 비효소적인 Fe$^{2+}$/ascorbate첨가 및 Fe$^{3+}$ -ADP/NADPH첨가에 의해 유도된 지질 과산화의 억제에 미치는 영향을 조사한 결과 공시재료중 밀양 2호가 가장 강한 항산화 활성을 가지고 있는 것으로 확인되었다. 자소 잎의 경우는 SOD활성과 유사하게 항산화 활성 정도 가장 낮아서 들깨잎과는 뚜렷 이 구별되었다.

• 대한약침학회지
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• 제4권1호
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• pp.123-124
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• 2001

Purpose. Free radicals are implicated in the pathophysiology of aging, ischemic injury and neurodegenerative disorders. To deform]no whether Hominis Placenta extract prevents $H_2O_2$-induced apoptosis, we have performed morphological and biochemical analyses for the detection of apoptotic phenomena in the pineal tumor cell line $PGT-{\beta}$ We have also peformed cytochemical and immunocytochemical analyses for the detection of changes in nitric oxide synthase (NOS) activity and estimated the expression . of apoptotic genes using reverse transcription-polymerase chain reaction (RT-PCR) Methods. $PGT-{\beta}\;cells$ were pretreated with Hominis Placenta extracts $(0,\;10^{-2}\;{\mu}g/ml)$ for 2 hours and then exposed to $H_2O_2\;(0,\;50\;{\mu}M)$ for 3 hours. Appearance of apoptotic characteristics were monitored using 4, 6-diamidino-2-phenylindole dihydrochloride (DAPI) staining assay, terminal deoxynucleotidyl transferase-mediated dUTP-digoxigenin nick end labeling (TUNEL) assay and flow cytometric analysis. NOS activity was measured by NADPH-diaphorase cytochemistry. Expression of inducible NOS (iNOS) and nuclear factor kappa B (NF k B) was assessed via immunocytochemistry. The expression of apoptotic genes was examined by RT-PCR. Results. After 3 flours of exposure to $H_2O_2$, it was shown that $PGT-{\beta}\;cells$ treated with $H_2O_2(50\;{\mu}M)$ exhibit classical apoptotic features and increases in NOS activity and caspase-3 expression. Treatment with Hominis Placenta extract resulted in a reduced occurrence of apoptotic features. DAPI staining, TUNEL and flow cytometric assays revealed decreases in the occurrence of nuclear fragmentation and in the sub-Gl fraction in the $PGT-{\beta}\;cells$ treated with Hominis Placenta extract. Cells treated with Hominis Placenta extract also showed lower activity of NADPH-diaphorase and immunoreactivities of both iNOS and NF k B than those of $H_2O_2$-treated cells which were not treated with Hominis Placenta extract. By RT-PCR, it was shown that the level of caspase-3 mRNA was derreased In the cells treated with Hominis Placenta . extract. Conclusions. This study shows that Hominis Placenta extract prevents $H_2O_2$-induced apoptosis in $PGT-{\beta}\;cells$; inhibitions of iNOS and caspnse-3 are possible mechanisms of the protection against apoptosis.

• 대한약침학회지
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• 제18권2호
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• pp.7-18
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• 2015

Objectives: Lawsone (1,4 naphthoquinone) is a non redox cycling compound that can be catalyzed by DT diaphorase (DTD) into 1,2,4-trihydroxynaphthalene (THN), which can generate reactive oxygen species by auto oxidation. The purpose of this study was to evaluate the toxicity of the phytomarker 1,4 naphthoquinone and its metabolite THN by using the molecular docking program AutoDock 4. Methods: The 3D structure of ligands such as hydrogen peroxide ($H_2O_2$), nitric oxide synthase (NOS), catalase (CAT), glutathione (GSH), glutathione reductase (GR), glucose 6-phosphate dehydrogenase (G6PDH) and nicotinamide adenine dinucleotide phosphate hydrogen (NADPH) were drawn using hyperchem drawing tools and minimizing the energy of all pdb files with the help of hyperchem by $MM^+$ followed by a semi-empirical (PM3) method. The docking process was studied with ligand molecules to identify suitable dockings at protein binding sites through annealing and genetic simulation algorithms. The program auto dock tools (ADT) was released as an extension suite to the python molecular viewer used to prepare proteins and ligands. Grids centered on active sites were obtained with spacings of $54{\times}55{\times}56$, and a grid spacing of 0.503 was calculated. Comparisons of Global and Local Search Methods in Drug Docking were adopted to determine parameters; a maximum number of 250,000 energy evaluations, a maximum number of generations of 27,000, and mutation and crossover rates of 0.02 and 0.8 were used. The number of docking runs was set to 10. Results: Lawsone and THN can be considered to efficiently bind with NOS, CAT, GSH, GR, G6PDH and NADPH, which has been confirmed through hydrogen bond affinity with the respective amino acids. Conclusion: Naphthoquinone derivatives of lawsone, which can be metabolized into THN by a catalyst DTD, were examined. Lawsone and THN were found to be identically potent molecules for their affinities for selected proteins.

• Molecules and Cells
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• 제28권4호
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• pp.321-329
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• 2009

Rapid production of nitric oxide (NO) and reactive oxygen species (ROS) has been implicated in the regulation of innate immunity in plants. A potato calcium-dependent protein kinase (StCDPK5) activates an NADPH oxidase StRBOHA to D by direct phosphorylation of N-terminal regions, and heterologous expression of StCDPK5 and StRBOHs in Nicotiana benthamiana results in oxidative burst. The transgenic potato plants that carry a constitutively active StCDPK5 driven by a pathogen-inducible promoter of the potato showed high resistance to late blight pathogen Phytophthora infestans accompanied by HR-like cell death and $H_2O_2$ accumulation in the attacked cells. In contrast, these plants showed high susceptibility to early blight necrotrophic pathogen Alternaria solani, suggesting that oxidative burst confers high resistance to biotrophic pathogen, but high susceptibility to necrotrophic pathogen. NO and ROS synergistically function in defense responses. Two MAPK cascades, MEK2-SIPK and cytokinesis-related MEK1-NTF6, are involved in the induction of NbRBOHB gene in N. benthamiana. On the other hand, NO burst is regulated by the MEK2-SIPK cascade. Conditional activation of SIPK in potato plants induces oxidative and NO bursts, and confers resistance to both biotrophic and necrotrophic pathogens, indicating the plants may have obtained during evolution the signaling pathway which regulates both NO and ROS production to adapt to wide-spectrum pathogens.

• Archives of Pharmacal Research
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• 제27권1호
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• pp.48-52
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• 2004

DA-11004 is a synthetic, potent NADP-dependent isocitrate dehydrogenase (IDPc) inhibitor where $IC_{50}$ for IDPc is 1.49 $\mu$M. The purpose of this study was to evaluate the effects of DA-11004 on the high fat high sucrose (HF)-induced obesity in male C57BL/6J mice. After completing a 8-week period of experimentation, the mice were sacrificed 1hr after the last DA-11004 treatment and their blood, liver, and adipose tissues (epididymal and retroperitoneal fat)were collected. There was a significant difference in the pattern of increasing body weight between the HF control and the DA-11004 group. In the DA-11004 (100 mg/kg) treated group the increase in body weight significantly declined and a content of epididymal fat and retroperitoneal fat was also significantly decreased as opposed to the HF control. DA-11004 (100 mg/kg) inhibited the IDPc activity, and thus, NADPH levels in plasma and the levels of free fatty acid (FFA) or glucose in plasma were less than the levels of the HF control group. In conclusion, DA-11004 inhibited the fatty acid synthesis in adipose tissues via IDPc inhibition, and it decreased the plasma glucose levels and FFA in HF diet-induced obesity of C57BL/6J mice.

• Journal of Microbiology and Biotechnology
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• 제27권5호
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• pp.956-964
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• 2017

Compactin and pravastatin are competitive cholesterol biosynthesis inhibitors of 3-hydroxy-3-methylglutaryl-CoA reductase and belong to the statin drugs; however, the latter shows superior pharmacokinetic characteristics. Previously, we reported that the bacterial P450, CYP105D7, from Streptomyces avermitilis can catalyze the hydroxylation of 1-deoxypentalenic acid, diclofenac, and naringenin. Here, we demonstrate that CYP105D7 could also catalyze compactin hydroxylation in vitro. In the presence of both bacterial and cyanobacterial redox partner systems with an NADPH regeneration system, the reaction produced two hydroxylated products, including pravastatin (hydroxylated at the C6 position). The steady-state kinetic parameters were measured using the redox partners of putidaredoxin and its reductase. The $k_m$ and $k_{cat}$ values for compactin were $39.1{\pm}8.8{\mu}M$ and $1.12{\pm}0.09min^{-1}$, respectively. The $k_{cat}/K_m$ value for compactin ($0.029min^{-1}{\cdot}{\mu}M^{-1}$) was lower than that for diclofenac ($0.114min^{-1}{\cdot}{\mu}M^{-1}$). Spectroscopic analysis showed that CYP105D7 binds to compactin with a $K_d$ value of $17.5{\pm}3.6{\mu}M$. Molecular docking analysis was performed to build a possible binding model of compactin. Comparisons of different substrates with CYP105D7 were conclusively illustrated for the first time.

• 한국식물학회:학술대회논문집
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• 한국식물학회 1999년도 Proceedings of the 17th Symposium on Plant Biology Environmental Stress and Photosynthesis
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• pp.83-90
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• 1999

Electron crystallography of two-dimensional crystalsand electron cryo-microscopy is becoming an established method for determining the structure and function of a variety of membrane proteins that are providing difficult to crystallize in three dimension. In this study this technique has been used to investigate the structure of a ~160 kDa reaction centre sub-core complex of photosystem II. Photosystem II is a photosynthetic membrane protein consisting of more than 25 subunits. It uses solar energy to split water releasing molecular oxygen into the atmosphere and creates electrochemical potential across the thylakoid membrane, which is eventually utilized to generate ATP and NADPH. Images were taken using Philips CM200 field emission gun electron microscope with an acceleration voltage of 200kW at liquid nitrogen temperature. In total, 79 images recorded dat tilt angles ranging from 0 to 67 degree yielded amplitudes and phases for a three-dimensional map with an in-plant resolution of 6$\AA$ and 11.4$\AA$ in the third dimension shows at least 23 transmembrane helices resolved in a monomeric complex, of which 18 were able to be assigned to the D1, D2, CP47 , and cytochrome b559 alfa beta-subunits with their associated pigments that ae active in electron transport (Rhee, 1998, Ph.D.thesis). The D1/D2 heterodimer is located in the central position within the complex and its helical scalffold is remarkably similar to that of the reaction centres not only in purple bacteria but also in plant photosystem I (PSI) , indicating a common evoluationary origin of all types of reaction centre in photosynthetic organism known today 9RHee et al. 1998). The structural homology is now extended to the inner antenna subunit, ascribed to CP47 in our map, where the 6 transmembrane helices show a striking structural similarity to the corresponding helices of the PSI reaction centre proteins. The overall arrangement of the chlorophylls in the D1 /D2 heterodimer, and in particular the distance between the central pair, is ocnsistent with the weak exciton coupling of P680 that distinguishes this reaction centre from bacterial counterpart. The map in most progress towards high resolution structure will be presented and discussed.

• Journal of Microbiology and Biotechnology
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• 제28권8호
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• pp.1346-1351
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• 2018

Oxidoreductases are effective biocatalysts, but their practical use is limited by the need for large quantities of NAD(P)H. In this study, a whole-cell biocatalyst for NAD(P)H cofactor regeneration was developed using the economical substrate glycerol. This cofactor regeneration system employs permeabilized Escherichia coli cells in which the glpD and gldA genes were deleted and the gpsA gene, which encodes $NAD(P)^+-dependent$ glycerol-3-phosphate dehydrogenase, was overexpressed. These manipulations were applied to block a side reaction (i.e., the conversion of glycerol to dihydroxyacetone) and to switch the glpD-encoding enzyme reaction to a gpsA-encoding enzyme reaction that generates both NADH and NADPH. We demonstrated the performance of the cofactor regeneration system using a lactate dehydrogenase reaction as a coupling reaction model. The developed biocatalyst involves an economical substrate, bifunctional regeneration of NAD(P)H, and simple reaction conditions as well as a stable environment for enzymes, and is thus applicable to a variety of oxidoreductase reactions requiring NAD(P)H regeneration.