• Title/Summary/Keyword: Molecular Simulation

Search Result 837, Processing Time 0.026 seconds

Sensitivity Test of the Parameterization Methods of Cloud Droplet Activation Process in Model Simulation of Cloud Formation (구름방울 활성화 과정 모수화 방법에 따른 구름 형성의 민감도 실험)

  • Kim, Ah-Hyun;Yum, Seong Soo;Chang, Dong Yeong
    • Atmosphere
    • /
    • v.28 no.2
    • /
    • pp.211-222
    • /
    • 2018
  • Cloud droplet activation process is well described by $K{\ddot{o}}hler$ theory and several parameterizations based on $K{\ddot{o}}hler$ theory are used in a wide range of models to represent this process. Here, we test the two different method of calculating the solute effect in the $K{\ddot{o}}hler$ equation, i.e., osmotic coefficient method (OSM) and ${\kappa}-K{\ddot{o}}hler$ method (KK). To do that, each method is implemented in the cloud droplet activation parameterization module of WRF-CHEM (Weather Research and Forecasting model coupled with Chemistry) model. It is assumed that aerosols are composed of five major components (i.e., sulfate, organic matter, black carbon, mineral dust, and sea salt). Both methods calculate similar representative hygroscopicity parameter values of 0.2~0.3 over the land, and 0.6~0.7 over the ocean, which are close to estimated values in previous studies. Simulated precipitation, and meteorological variables (i.e., specific heat and temperature) show good agreement with reanalysis. Spatial patterns of precipitation and liquid water path from model results and satellite data show similarity in general, but on regional scale spatial patterns and intensity show some discrepancy. However, meteorological variables, precipitation, and liquid water path do not show significant differences between OSM and KK simulations. So we suggest that the relatively simple KK method can be a good alternative to the OSM method that requires various information of density, molecular weight and dissociation number of each individual species in calculating the solute effect.

Characterization of Thickness and Thermoelastic Properties of Interphase in Polymer Nanocomposites using Multiscale Analysis (멀티스케일 해석을 통한 고분자 나노복합재의 계면 상 두께와 열탄성 물성 도출)

  • Choi, Joonmyung;Cho, Maenghyo
    • Journal of the Computational Structural Engineering Institute of Korea
    • /
    • v.29 no.6
    • /
    • pp.577-582
    • /
    • 2016
  • In this study, a multiscale method for solving a thermoelasticity problem for interphase in the polymeric nanocomposites is developed. Molecular dynamics simulation and finite element analysis were numerically combined to describe the geometrical boundaries and the local mechanical response of the interfacial region where the polymer networks were highly interacted with the nanoparticle surface. Also, the micrmechanical thermoelasticity equations were applied to the obtained equivalent continuum unit to compute the growth of interphase thickness according to the size of nanoparticles, as well as the thermal phase transition behavior at a wide range of temperatures. Accordingly, the equivalent continuum model obtained from the multiscale analysis provides a meaningful description of the thermoelastic behavior of interphase as well as its nanoparticle size effect on thermoelasticity at both below and above the glass transition temperature.

MD simulation of structural change of polyethylene induced by high energy ion bombardment

  • Kim, Chan-Soo;Ahmed, Sk. Faruque;Moon, Myoung-Woon;Lee, Kwang-Ryeol
    • Proceedings of the Korean Vacuum Society Conference
    • /
    • 2010.02a
    • /
    • pp.358-358
    • /
    • 2010
  • Ion beam bombardment at low energy forms nanosize patterns such as ripples, dots or wrinkles on the surface of polymers in ambient temperature and pressure. It has been known that the ion beam can alter the polymer surface that induces skins stiffer or the density higher by higher compressive stress or strain energies associated with chain scissions and crosslinks of the polymer. Atomic scale structure evolution in polymers is essential to understand a stress generation mechanism during the ion beam bombardment, which governs the nanoscale surface structure evolution. In this work, Molecular Dynamics (MD) simulations are employed to characterize the phenomenon occurred in bombardment between the ion beam and polymers that forms nanosize patterns. We investigate the structure evolution of Low Density Polyethylene (LDPE) at 300 K as the polymer is bombarded with Argon ions having various kinetic energies ranging from 100 eV to 1 KeV with 50 eV intervals having the fluence of $1.45\;{\times}\;1014 #/cm2$. These simulations use the Reactive Force Field (ReaxFF), which can mimic chemical covalent bonds and includes van der Waals potentials for describing the intermolecular interactions. The results show the details of the structural evolution of LDPE by the low energy Ar ion bombardment. Analyses through kinetic and potential energy, number of crosslinks and chain scissions, level of local densification and motions of atoms support that the residual strain energies on the surface is strongly associated with the number of crosslinks or scissored chains. Also, we could find an optimal Ar ion beam energy to make crosslinks well.

  • PDF

Force Fields and Elastic Properties of Syndiotactic Isoregic Poly(viny1 fluoride) Crystal (Syndiotactic isoregic 폴리비닐플로라이드 결정의 Force Fields 및 Elastic Properties)

  • Geo, G;Lee, Jeong-Gu;Hong, Jin-Hu
    • Korean Journal of Materials Research
    • /
    • v.4 no.7
    • /
    • pp.792-797
    • /
    • 1994
  • Force fields of syndiotactic isoregic PVF crystal have been extracted by optimizing a structure of 2,4,6-trifluoroheptane with ab initio Quantum mechanical method with 6-31G * * basis set, and applied to calculate the structure parameters and elastic constants of the material. The cell parameters turned out to be 5.205$\AA$, of a axis(chain axis), 8.457$\AA$, of b axis and 4.621$\AA$ of c axis. These parameters are in fair agreement with those of the atactic X-ray structure(5.04$\AA$, 8.57$\AA$, and 4.95$\AA$,respectively). The young's modulus of defect free syndiotactic PVF crystal was computed to be 267 GPa comparable to those of polyvinilidene fluoride(277-293 GPa) and polyethylene(264-337 GPa) crystals. Bulk modulus value obtained at optimum geometry is more than twice greater than that obtained at experimental geometry due to large difference of elastic compliance constant (especially Sgj element) at these two different geometries.

  • PDF

MULTI-SCALE MODELING AND ANALYSIS OF CONVECTIVE BOILING: TOWARDS THE PREDICTION OF CHF IN ROD BUNDLES

  • Niceno, B.;Sato, Y.;Badillo, A.;Andreani, M.
    • Nuclear Engineering and Technology
    • /
    • v.42 no.6
    • /
    • pp.620-635
    • /
    • 2010
  • In this paper we describe current activities on the project Multi-Scale Modeling and Analysis of convective boiling (MSMA), conducted jointly by the Paul Scherrer Institute (PSI) and the Swiss Nuclear Utilities (Swissnuclear). The long-term aim of the MSMA project is to formulate improved closure laws for Computational Fluid Dynamics (CFD) simulations for prediction of convective boiling and eventually of the Critical Heat Flux (CHF). As boiling is controlled by the competition of numerous phenomena at various length and time scales, a multi-scale approach is employed to tackle the problem at different scales. In the MSMA project, the scales on which we focus range from the CFD scale (macro-scale), bubble size scale (meso-scale), liquid micro-layer and triple interline scale (micro-scale), and molecular scale (nano-scale). The current focus of the project is on micro- and meso-scales modeling. The numerical framework comprises a highly efficient, parallel DNS solver, the PSI-BOIL code. The code has incorporated an Immersed Boundary Method (IBM) to tackle complex geometries. For simulation of meso-scales (bubbles), we use the Constrained Interpolation Profile method: Conservative Semi-Lagrangian $2^{nd}$ order (CIP-CSL2). The phase change is described either by applying conventional jump conditions at the interface, or by using the Phase Field (PF) approach. In this work, we present selected results for flows in complex geometry using the IBM, selected bubbly flow simulations using the CIP-CSL2 method and results for phase change using the PF approach. In the subsequent stage of the project, the importance of effects of nano-scale processes on the global boiling heat transfer will be evaluated. To validate the models, more experimental information will be needed in the future, so it is expected that the MSMA project will become the seed for a long-term, combined theoretical and experimental program.

MCRO-ECP: Mutation Chemical Reaction Optimization based Energy Efficient Clustering Protocol for Wireless Sensor Networks

  • Daniel, Ravuri;Rao, Kuda Nageswara
    • KSII Transactions on Internet and Information Systems (TIIS)
    • /
    • v.13 no.7
    • /
    • pp.3494-3510
    • /
    • 2019
  • Wireless sensor networks encounter energy saving as a major issue as the sensor nodes having no rechargeable batteries and also the resources are limited. Clustering of sensors play a pivotal role in energy saving of the deployed sensor nodes. However, in the cluster based wireless sensor network, the cluster heads tend to consume more energy for additional functions such as reception of data, aggregation and transmission of the received data to the base station. So, careful selection of cluster head and formation of cluster plays vital role in energy conservation and enhancement of lifetime of the wireless sensor networks. This study proposes a new mutation chemical reaction optimization (MCRO) which is an algorithm based energy efficient clustering protocol termed as MCRO-ECP, for wireless sensor networks. The proposed protocol is extensively developed with effective methods such as potential energy function and molecular structure encoding for cluster head selection and cluster formation. While developing potential functions for energy conservation, the following parameters are taken into account: neighbor node distance, base station distance, ratio of energy, intra-cluster distance, and CH node degree to make the MCRO-ECP protocol to be potential energy conserver. The proposed protocol is studied extensively and tested elaborately on NS2.35 Simulator under various senarios like varying the number of sensor nodes and CHs. A comparative study between the simulation results derived from the proposed MCRO-ECP protocol and the results of the already existing protocol, shows that MCRO-ECP protocol produces significantly better results in energy conservation, increase network life time, packets received by the BS and the convergence rate.

Catalytic Ability Improvement of Phenylalanine Hydroxylase from Chromobacterium violaceum by N-Terminal Truncation and Proline Introduction

  • Liu, Zhongmei;Cheng, Zhongyi;Ye, Shuangshuang;Zhou, Li;Zhou, Zhemin
    • Journal of Microbiology and Biotechnology
    • /
    • v.29 no.9
    • /
    • pp.1375-1382
    • /
    • 2019
  • Phenylalanine hydroxylase from Chromobacterium violaceum (CvPAH) is a monomeric enzyme that converts phenylalanine to tyrosine. It shares high amino acid identity and similar structure with a subunit of human phenylalanine hydroxylase that is a tetramer, resulting in the latent application in medications. In this study, semirational design was applied to CvPAH to improve the catalytic ability based on molecular dynamics simulation analyses. Four N-terminal truncated variants and one single point variant were constructed and characterized. The D267P variant showed a 2.1-fold increased thermal stability compared to the wild type, but lower specific activity was noted compared with the wild type. The specific activity of all truncated variants was a greater than 25% increase compared to the wild type, and these variants showed similar or slightly decreased thermostability with the exception of the $N-{\Delta}9$ variant. Notably, the $N-{\Delta}9$ variant exhibited a 1.2-fold increased specific activity, a 1.3-fold increased thermostability and considerably increased catalytic activity under the neutral environment compared with the wild type. These properties of the $N-{\Delta}9$ variant could advance medical and pharmaceutical applications of CvPAH. Our findings indicate that the N-terminus might modulate substrate binding, and are directives for further modification and functional research of PAH and other enzymes.

An Improved Decoding Scheme of Hamming Codes using Soft Values (소프트 값을 이용한 해밍 부호의 개선된 복호 방식)

  • Cheong, Ho-Young
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
    • /
    • v.12 no.1
    • /
    • pp.37-42
    • /
    • 2019
  • In this paper, we propose a syndrome decoding scheme that can correct two errors for single error correcting Hamming codes within a code length. The decoding scheme proposed in this paper has the advantage of significantly improving the error rate performance compared to the decoder complexity by correcting multiple errors without substantially increasing the decoding complexity. It is suitable for applications in which the energy use of encoder/decoder is extremely limited and the low error rate performance is required, such as IoT communications and molecular communications. In order to verify the improvement of the error rate performance of the Hamming code with the proposed decoding scheme, we performed simulation on Hamming codes with short code length in the AWGN and BPSK modulation environments. As a result, compared with the conventional decoding method, the proposed decoding scheme showed performance improvement of about 1.1 ~ 1.2[dB] regardless of the code length of the Hamming code.

Particle Dispersion Model Speed Improvement and Evaluation for Quick Reaction to Pollutant Accidents (신속한 오염사고 대응을 위한 입자 분산 모형의 속도 개선 및 평가)

  • Shin, Jaehyun;Seong, Hoje;Park, Inhwan;Rhee, Dong Sop
    • The Journal of the Korea Contents Association
    • /
    • v.20 no.12
    • /
    • pp.537-546
    • /
    • 2020
  • This study deals with the development and improvement of a particle dispersion model for quick response to water pollutant accidents. The developed model is based on the shear dispersion theory where vertical mixing is done by step by step mixing by vertical and molecular diffusion algorithm. For the quick response to chemical accidents, an algorithm for multi-core modeling for the particle dispersion model is applied. After the application of multi-core operation using OpenMP directives to the model, the relation for the calculation time and particle size were determined along with the number of cores used for parallel programming to determine the model time for chemical accident responses. The results showed the adequate conditions for the modeling of chemical accidents for quick response and to increase the applicability of the model.

Large cylindrical deflection analysis of FG carbon nanotube-reinforced plates in thermal environment using a simple integral HSDT

  • Djilali, Nassira;Bousahla, Abdelmoumen Anis;Kaci, Abdelhakim;Selim, Mahmoud M.;Bourada, Fouad;Tounsi, Abdeldjebbar;Tounsi, Abdelouahed;Benrahou, Kouider Halim;Mahmoud, S.R.
    • Steel and Composite Structures
    • /
    • v.42 no.6
    • /
    • pp.779-789
    • /
    • 2022
  • This work presents a non-linear cylindrical bending analysis of functionally graded plate reinforced by single-walled carbon nanotubes (SWCNTs) in thermal environment using a simple integral higher-order shear deformation theory (HSDT). This theory does not require shear correction factors and the transverse shear stresses vary parabolically through the thickness. The material properties of SWCNTs are assumed to be temperature-dependent and are obtained from molecular dynamics simulations. The material properties of functionally graded carbon nanotube-reinforced composites (FG-CNTCRs) are considered to be graded in the thickness direction, and are estimated through a micromechanical model. The non-linear strain-displacement relations in the Von Karman sense are used to study the effect of geometric non-linearity and the solution is obtained by minimization of the total potential energy. The numerical illustrations concern the nonlinear bending response of FG-CNTRC plates under different sets of thermal environmental conditions, from which results for uniformly distributed CNTRC plates are obtained as benchmarks.