• Bulletin of the Korean Chemical Society
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• 제10권2호
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• pp.161-167
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• 1989

The results of ab initio(MP2/6-31G) molecular orbital calculations of the dipole moment derivatives and gas phase IR intensities in chloromethanes are reported. The theoretical polar tensors are analyzed into the net charge, charge-flux, and overlap contributions. The charge-flux contribution was found to be dominant in the Cl atom polar tensor, while the net charge effect was the most prominent contribution for the H atom polar tensor. The Cl atom polar tensor appeared, in a good approximation, to be transferable among various chloro molecules. On the other hand, for the prediction of IR spectra of complex hydrocarbons containing chlorine atoms, some empirical adjustment of the H-atom polar tensor seemed to be made depending on the number of Cl atoms bound to the certain carbon atom.

• Applied Biological Chemistry
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• 제26권2호
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• pp.125-131
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• 1983

Dimethyl-2,2-dichlorovinylphosphate (DDVP) 분자를 정량적으로 이해하기 위한 시도의 일환으로 분자궤도함수를 계산하여 구성 원자의 알짜 전하, 결합차수, 원자 궤도계수, 에너지 성분 분석 및 형태 둥의 결과로 부터 분자의 안정성과 반응성을 검토하였다. 또한 DDVP분자의 가수분해 반응 메카니즘을 제안하기 위하여 가수분해 반응 생성물을 분석한 결과 주 생성물은 2,2-dichlorovinylphosphate와 dimethylphosphate임을 재확인하여 염기성 용액중에서의 가수분해 반응속도와 pH에 대한 변화로 부터 유도된 반응 속도식은 다음과 같다. ${\therefore}\;k_{obs}=k_{OH}[OH-]{\cdot}kw/[H_3O^+]$ $=2.10{\times}10^{-11}/[H_3O^*]$ 이상과 같은 사실로 부터 DDVP분자의 가수분해 반응 메카니즘은 다음과 같이 설명된다. 즉, 단일 결합성인 $C_2({\alpha})-O_3$를 회전축으로 나타낸 가장 안정한 형태는 staggered conformation $({\mu}=4.90debye)$이였으며, 전하의 분리가 크게 이루워진 $C_1({\beta})=C_2({\alpha})$결합의 양하전이 큰 평면상의 $C_2({\alpha})$원자에 강한 친핵체인 OH-이온이 수직으로 첨가하여 파이-반결합궤도$({\pi}^*)$를 가지는 $C_2({\alpha})-O_3$의 단일결합이 불균형 분해하여 2,2-dichloroacetaldehyde와 dimethylphosphate를 생성하는 일련의 복잡한 전형적인 Michael형의 친핵성 첨가반응 매카니즘을 제안하였다.

• 한국표면공학회:학술대회논문집
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• 한국표면공학회 2017년도 춘계학술대회 논문집
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• pp.126-126
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• 2017

Using first principles calculations we unveil fundamental mechanism of hydrolysis reactions of two hazardous chemicals $PCl_3$ and $POCl_3$ with molecular water clusters nearby. It is found that the water molecules play a key role as a catalyst significantly lowing the activation barriers by transferring its protons to the reaction intermediates. Interestingly, torsional angles of molecular complexes at transition states are identified as a vital descriptor on the reaction rate. Analysis of charge distribution over the complexes further reinforces the finding with atomic level correlation between the torsional angle and variation of the orbital hybridization state of P in the complex. Electronic charge separation (or polarization) enhances thermodynamic stability of the activated complex at transition state and reduces the activation energy through hydrogen bonding network with water molecules nearby. Calculated potential energy surfaces (PES) for the hydrolysis reactions of $PCl_3$ and $POCl_3$ depict their two contrastingly different profiles of double- and triple-deep wells, respectively. It is ascribed to the unique double-bonding O=P in the $POCl_3$. Our results on the activation free energy show well agreements with previous experimental data within $7kcalmol^{-1}$ deviation.

• Bulletin of the Korean Chemical Society
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• 제28권6호
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• pp.959-964
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• 2007

The benzene complexes with dimethyl sulfur (DMS) and fluorinated DMS (FDMS) have been investigated using ab initio calculations. The natural bond orbital (NBO) charge population on S atom varies remarkably for different conformations of DMS and FDMS, which determines the possible binding modes for their benzene complexes. The electronegative substituent at the methyl group of DMS causes a significant change in the molecular electrostatic potential around the sulfur atom and changes the interaction mode with aromatic ring. It was found that the sulfur…π interaction mode does not occur in the DMS-benzene complex, while it does in the FDMS-benzene complex. Both B3LYP and MP2 methods provide reliable structures, while the interaction energy obtained by B3LYP is unreliable.

• 대한화학회지
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• 제36권4호
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• pp.477-484
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• 1992

Y123 초전도체 및 Y124 초전도체 결정 구조에서 사슬과 층에 존재하는 구리의 화학결합 및 전자 성질을 반경험적 분자 궤도론인 ASED-MO로 계산하여 VEP(valence electron population), DOS(density of state) 및 COOP(crystal orbital overlap population)로써 고찰하였다. 또한 구리 원자의 환경 효과를 알아보기 위하여 하전 덩어리 모델에 수소의 점전하가 있는 경우와 점전하가 없는 경우를 도입하였다. ASED-MO 계산 결과로 부터, Y123 초전도체 및 Y124 초전도체의 사슬에 존재하는 구리 원자는 전자 받게 역할을 하며, 층에 존재하는 구리 원자는 전자 주게 역할을 한다는 것을 알 수 있었다. 점전하가 없는 Y123 초전도체 및 Y124 초전도체의 사슬에 존재하는 구리의 산화 상태는 층에 존재하는 구리의 산화 상태보다도 더 크다. Y123 초전도체의 층에 존재하는 구리 원자의 산화 상태는 Y124 초전도체의 층에 존재하는 구리 원자의 산화 상태보다도 더 크다. 그리고 Y123 초전도체의 사슬과 층에 존재하는 구리 원자는 주위 환경에 크게 영향을 받지 않으며, Y124 초전도체의 사슬과 층에 존재하는 구리 원자의 경우 Y123 초전도체와 다르게 주위 환경에 크게 영향을 받는다는 것을 알 수 있었다. 또한 Cu1-O4, Cu2-O4의 전자분포와 결합성은 Y123 초전도체와 Y124 초전도체가 다르게 나타났다.

• 대한화학회지
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• 제41권6호
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• pp.277-283
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• 1997

질소를 포함한 평면형리간드가 배위된 백금(II)착물([$Pt(L)_2X_2$]; L=isoxazole(isox), 3,5-dimethylisoxazole(3,5-diMeisox), 3-methyl,5-phenylisoxazole(3-Me,5-Phisox), and 4-amino-3,5-dimethylisoxazole(4-ADI); X=Cl, Br)의 항암활성을 분자역학(MM2)법으로 최소에너지를 갖는 구조를 구한 후 확장분자궤도함수(Extended Huckel Molecular Orbital)법으로 조사하였다. X 원자의 알짜전하 값은 cis-, trans-이성체 모두 평면리간드의 N 원자보다 음의 값으로 크게 나타나서, N 원자보다 X 원자의 이탈이 용이함을 알 수가 있었고, ${\sigma}MO$에너지 준위로 비교한 결과도 $Pt(d_{x2-y2})-X(P_x)$의 ${\sigma}MO$에너지 준위$(E{\sigma}_{(Pt-X)})$가 $Pt(d_{x2-y2})-N(P_x)$의 ${\sigma}MO$에너지 준위$(E{\sigma}_{(Pt-N)})$보다 예외없이 높아서 Pt-N보다 Pt-X의 결합이 약함을 알 수 있었다. 또한 X 원자의 cis-, trans-이성체에서의 이탈 용이성을 비교하기 위하여 중심금속과 리간드사이의 ${\sigma}MO$에너지준위로 비교한 결과, trans-이성체에서 $Pt(d_{x2-y2})-N(P_x)$의 ${\sigma}MO$에너지준위$(E{\sigma}_{(Pt-X)})$가 cis-이성체에서 보다 예외없이 높아서 결합이 약함을 알 수 있었다. 아울러 같은 착물에서 cis-보다 trans-착물에서 Pt-X의 결합이 약함을 알 수 있었다, 따라서 $X^-$이온으로 떨어져 나가는 용이성과 그 구조변화가 항암활성과 관계가 있을 것으로 생각하였다. 즉, $E{\sigma}_{(P-N)}-E{\sigma}_{(P1-X)}$가 클수록 저해활성 계수 logIA값이 크게 나타나서 실험적 사실과 일치함을 알 수 있었다.

• Bulletin of the Korean Chemical Society
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• 제10권6호
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• pp.504-509
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• 1989

The effect of oxygen-deficiency on the charge distributions and orbital energies for small copper oxide clusters representing the superconducting materials $YBa_2Cu_3O_x (6{\leq}x{\leq}7)$ were investigated by the extended Huckel molecular orbital (EHMO) method with the tight-binding model. Our calculations show +3 oxidation state of Cu(1) in the $CuO_3$ chain and +2 or +1 of Cu(2) in the $CuO_2$ layers for $YBa_2Cu_3O_7$ with the nominal charge of $Cu_3$ = +7 (or +5), while for $YBa_2Cu_3O_6$ +1 oxidation state of Cu(1) and +3 (or +2) of Cu(2) in the $CuO_2$ layers with the nominal charge of $Cu_3$ = +7 (or +5). For $Cu_3O_{12}$ cluster representing $YBa_2Cu_3O_7$ with the nominal charge of $Cu_3$ = +7 the Cu(2) $d_{{x^2}-{y^2}}$ orbitals in the $CuO_2$ layers is a typical Jahn-Teller $d^9$ system with the partial hole and the Cu(1) $d_{{_z2}-{_y2}}$ orbital in the $CuO_3$ chain contains hole occupancy. For $Cu_3O_{10}$ cluster representing $YBa_2Cu_3O_6$ with the nominal charge of Cu = +5 the orbital character of the highest partially occupied MO (HPOMO) and the lowest completely unoccupied MO (LCUMO) of $Cu_3O_{12}$ representing $YBa_2Cu_3O_7$ with the nominal charge of $Cu_3$ = +7 is reversed, and the character of Cu(1) $d{{x^2}-{y^2}}$ orbital of LCUMO of the $Cu_3O_{12} $cluster is vanished. It is suggested that the local crystal field environment of Cu(1) by the oxygens in the Cu(1) chain may play a vital role in conductivity and superconductivity, either alone or through cooperative electronic coupling with the Cu(2) layers in $YBa_2Cu_3O_7.$.

• 한국전기전자재료학회논문지
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• 제17권7호
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• pp.691-696
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• 2004

The electronic state and chemical bonding of $\beta$-MnO$_2$ with transition metal dopants were theoretically investigated by DV-X$_{\alpha}$ (the discrete variational X$_{\alpha}$) method, which is a sort of the first principles molecular orbital method using the Hartree-Fock-Slater approximation. The calculations were performed with a $_Mn_{14}$ MO$_{56}$ )$^{-52}$ (M = transition metals) cluster model. The electron energy level, the density of states (DOS), the overlap population, the charge density distribution, and the net charges, were calculated. The energy level diagram of MnO$_2$ shows the different band structure and electron occupancy between the up spin states and down spin states. The dopant levels decrease between the conduction band and the valence band with the increase of the atomic number of dopants. The covalency of chemical bonding was shown to increase and ionicity decreased in increasing the atomic number of dopants. Calculated results were discussed on the basis of the interaction between transition metal 3d and oxygen 2p orbital. In conclusion it is expected that when the transition metals are added to MnO$_2$ the band gap decreases and the electronic conductivity increases with the increase of the atomic number of dopants. the atomic number of dopants.

• Bulletin of the Korean Chemical Society
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• 제24권6호
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• pp.864-880
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• 2003

A unified picture for magnetism, superconductivity, quantum optics and other properties of molecule-based materials has been presented on the basis of effective model Hamiltonians, where necessary parameter values have been determined by the first principle calculations of cluster models and/or band models. These properties of the matetials are qualitatively discussed on the basis of the spin and pseudo-spin Hamiltonian models, where several quantum operators are expressed by spin variables under the two level approximation. As an example, ab initio broken-symmetry DFT calculations are performed for cyclic magnetic ring constructed of 34 hydrogen atoms in order to obtain effective exchange integrals in the spin Hamiltonian model. The natural orbital analysis of the DFT solution was performed to obtain symmetry-adapted molecular orbitals and their occupation numbers. Several chemical indices such as information entropy and unpaired electron density were calculated on the basis of the occupation numbers to elucidate the spin and pair correlations, and bonding characteristic (kinetic correlation) of this mesoscopic magnetic ring. Both classical and quantum effects for spin alignments and singlet spin-pair formations are discussed on the basis of the true spin Hamiltonian model in detail. Quantum effects are also discussed in the case of superconductivity, atom optics and quantum optics based on the pseudo spin Hamiltonian models. The coherent and squeezed states of spins, atoms and quantum field are discussed to obtain a unified picture for correlation, coherence and decoherence in future materials. Implications of theoretical results are examined in relation to recent experiments on molecule-based materials and molecular design of future molecular soft materials in the intersection area between molecular and biomolecular materials.

• 대한화학회지
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• 제23권5호
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• pp.271-276
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• 1979

EHT 및 CNDO/2 분자궤도법을 사용하여 각종 이노시톨의 형태의 안정성을 결정하였다. EHT 계산결과는 실험사실과 일치하며 산소원자간의 비결합 1,3-상호작용을 올바르게 나타내 주었다. 또 EHT 결과에 따르면 수산기의 수소와 인접 산소간의 퍼텐셜 에너지가 형태 결정의 주요 요소의 하나임을 알 수 있었다. CNDO/2 방법은 고립쌍-고립쌍간의 불안정 요인이 되는 상호작용을 올바르게 나타내주지 못했으며 이것은 1,3-상호작용이 있는 형태의 안정도를 과도하게 나타내었다. 이노시톨의 형태연구에는 CNDO/2 방법보다 EHT 방법이 우수하다.