• Title/Summary/Keyword: Model Translation

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Survey on Nucleotide Encoding Techniques and SVM Kernel Design for Human Splice Site Prediction

  • Bari, A.T.M. Golam;Reaz, Mst. Rokeya;Choi, Ho-Jin;Jeong, Byeong-Soo
    • Interdisciplinary Bio Central
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    • v.4 no.4
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    • pp.14.1-14.6
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    • 2012
  • Splice site prediction in DNA sequence is a basic search problem for finding exon/intron and intron/exon boundaries. Removing introns and then joining the exons together forms the mRNA sequence. These sequences are the input of the translation process. It is a necessary step in the central dogma of molecular biology. The main task of splice site prediction is to find out the exact GT and AG ended sequences. Then it identifies the true and false GT and AG ended sequences among those candidate sequences. In this paper, we survey research works on splice site prediction based on support vector machine (SVM). The basic difference between these research works is nucleotide encoding technique and SVM kernel selection. Some methods encode the DNA sequence in a sparse way whereas others encode in a probabilistic manner. The encoded sequences serve as input of SVM. The task of SVM is to classify them using its learning model. The accuracy of classification largely depends on the proper kernel selection for sequence data as well as a selection of kernel parameter. We observe each encoding technique and classify them according to their similarity. Then we discuss about kernel and their parameter selection. Our survey paper provides a basic understanding of encoding approaches and proper kernel selection of SVM for splice site prediction.

Effects of different target sites on antisense RNA-mediated regulation of gene expression

  • Park, Hongmarn;Yoon, Yeongseong;Suk, Shinae;Lee, Ji Young;Lee, Younghoon
    • BMB Reports
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    • v.47 no.11
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    • pp.619-624
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    • 2014
  • Antisense RNA is a type of noncoding RNA (ncRNA) that binds to complementary mRNA sequences and induces gene repression by inhibiting translation or degrading mRNA. Recently, several small ncRNAs (sRNAs) have been identified in Escherichia coli that act as antisense RNA mainly via base pairing with mRNA. The base pairing predominantly leads to gene repression, and in some cases, gene activation. In the current study, we examined how the location of target sites affects sRNA-mediated gene regulation. An efficient antisense RNA expression system was developed, and the effects of antisense RNAs on various target sites in a model mRNA were examined. The target sites of antisense RNAs suppressing gene expression were identified, not only in the translation initiation region (TIR) of mRNA, but also at the junction between the coding region and 3' untranslated region. Surprisingly, an antisense RNA recognizing the upstream region of TIR enhanced gene expression through increasing mRNA stability.

SWR as Tool for Determination of the Surface Magnetic Anisotropy Energy Constant

  • Maksymowicz, L.J.;Lubecka, M.;Jablonski, R.
    • Journal of Magnetics
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    • v.3 no.4
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    • pp.105-111
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    • 1998
  • The low energy excitations of spin waves (SWR) in thin films can be used for determination of the surface anisotropy constant and the nonhomogeneities of magnetization in the close-to-surface layer. The dispersion relation in SWR is sensitive on the geometry of experiment. We report on temperature dependence of surface magnetic anisotropy energy constant in magnetic semiconductor thin films of$ CdCr_{2-2x}In_{2x}Se_4$ at spin glass state. Samples were deposited by rf sputtering technique on Corning glass substrate in controlled temperature conditions. Coexistence of the infinite ferromagnetic network (IFN) and finite spin slusters (FSC) in spin glass state (SG) is know phenomena. Some behavior typical for long range magnetic ordering is expected in samples at SG state. The spin wave resonance experiment (microwave spectrometer at X-band) with excited surface modes was applied to describe the energy state of surface spins. We determined the surface magnetic anisotropy energy constant versus temperature using the surface inhomogeneities model of magnetic thin films. It was found that two components contribute to the surface magnetic anisotropy energy. One originates from the exchange interaction term due to the lack of translation symmetry for surface spin as well as from the originates from the exchange interaction term due to the lack of translation symmetry for surface spin as well as from the stray field of the surface roughness. The second one comes from the demagnetizing field of close-to surface layer with grad M. Both term linearly decrease when temperature is increased from 5 to 123 K, but dominant contribution is from the first component.

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Documents to Produce for the Recognition and Enforcement of Arbitral Awards (중재판정의 승인.집행을 위하여 제출할 서류)

  • Lee, Ho-Won
    • Journal of Arbitration Studies
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    • v.23 no.2
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    • pp.141-164
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    • 2013
  • The current Korean Arbitration Act (KAA) ${\S}37(2)$ requires that a formal copy of an arbitral award or a duly certified copy thereof and the original arbitration agreement or a duly certified copy thereof be produced for the recognition and enforcement of a arbitral award. But as the KAA provides that the recognition and enforcement of a foreign arbitral award to which the New York Convention applies shall be granted in accordance with the Convention, the duly authenticated original award should be produced instead of a formal copy in that case. The provision on the documents to produce for the recognition and enforcement of an arbitral award is set to establish a reasonable and transparent standard and to facilitate the recognition and enforcement of awards by prohibiting parochial refusal of the recognition and enforcement on the grounds of formalities. Therefore it is necessary to simplify those documents according to the internationally acknowledged standard. It would be desirable to amend KAA ${\S}37(2)$ to require only "the original arbitral award or a copy thereof" without authentication or certification and a translation into Korean without any condition, adopting the 2006 amendment to the UNCITRAL Model Law on International Commercial Arbitration.

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The Role of Economic Cluster Perspectives in Regional Economic Development

  • Haak, Robert;Vora, Gautam;Walsh, Steven T.;White, Craig G.
    • World Technopolis Review
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    • v.3 no.1
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    • pp.17-29
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    • 2014
  • The importance of science and technology as the root of exceptional regional economic development has been extolled since the time of Schumpeter. Today emerging technologies are signaling the start of a new economic cycle where regions that are effective in technology translation will gain advantage. The will of policymakers to translate technology into regional job and wealth creation seems to be at an all-time high. Yet an improved process for translating technical development into regional prosperity has proved elusive. If there are no processes other than applying techniques that have worked in the past for other regions to a new region then there is cause for concern. Here the authors seek to add to this field of knowledge by applying elements of the varied cluster theories to provide a basis for policy for regional economic development by turning science and technology into commercial innovation. We provide a review of current cluster theories and discuss the positive and negative issues associated with each. We propose a model that allows interested professionals to utilize aspects of each cluster perspective geared to the realities of their specific area.

A Study on the Reliability and Validity of the Korean Version of Self-directed Learning Instrument (한국어판 자기주도 학습능력 측정도구의 신뢰도 및 타당도 검증)

  • Kwak, Eun Mi;Lee, Joo Young;Woo, Jin Ju
    • Journal of Korean Academy of Fundamentals of Nursing
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    • v.26 no.1
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    • pp.12-22
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    • 2019
  • Purpose: This study was done to verify the self-directed learning instrument (SDLI) developed to measure self-directed learning ability in nursing students. Methods: The participants for the study were 425 nursing college students. Their self-directed learning was verified using self-reports and results through questionnaires. SDLI was translated into Korean through translation/reverse translation process and its content validity verified by five experts. The validity of the instrument was verified through item analysis, exploratory factor analysis, and confirmatory factor analysis. Reliability verification was analyzed using internal consistency reliability. Results: Four factors were identified through exploratory factor analysis and 20 items of the original instrument were found to be valid. In the confirmatory factor analysis, the validity of the instrument was verified as the model was valid. The internal consistency reliability was also acceptable and SDLI was found to be an applicable instrument. Conclusion: SDLI has been developed and verified by selecting nursing students as participants for the study. Use if SDLI is expected to improve the quality of self-directed learning in nursing education and to be used in future nursing research.

Design Neural Machine Translation Model Combining External Symbolic Knowledge (심볼릭 지식 정보를 결합한 뉴럴기계번역 모델 설계)

  • Eo, Sugyeong;Park, Chanjun;Lim, Heuiseok
    • Annual Conference on Human and Language Technology
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    • 2020.10a
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    • pp.529-534
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    • 2020
  • 인공신경망 기반 기계번역(Neural Machine Translation, NMT)이란 딥러닝(Deep learning)을 이용하여 출발 언어의 문장을 도착 언어 문장으로 번역해주는 시스템을 일컫는다. NMT는 종단간 학습(end-to-end learning)을 이용하여 기존 기계번역 방법론의 성능을 앞지르며 기계번역의 주요 방법론으로 자리잡게 됐다. 이러한 발전에도 불구하고 여전히 개체(entity), 또는 전문 용어(terminological expressions)의 번역은 미해결 과제로 남아있다. 개체나 전문 용어는 대부분 명사로 구성되는데 문장 내 명사는 주체, 객체 등의 역할을 하는 중요한 요소이므로 이들의 정확한 번역이 문장 전체의 번역 성능 향상으로 이어질 수 있다. 따라서 본 논문에서는 지식그래프(Knowledge Graph)를 이용하여 심볼릭 지식을 NMT와 결합한 뉴럴심볼릭 방법론을 제안한다. 또한 지식그래프를 활용하여 NMT의 성능을 높인 선행 연구 방법론을 한영 기계번역에 이용할 수 있도록 구조를 설계한다.

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WELL-POSEDNESS AND ASYMPTOTIC BEHAVIOR OF PARTLY DISSIPATIVE REACTION DIFFUSION SYSTEMS WITH MEMORY

  • Vu Trong Luong;Nguyen Duong Toan
    • Bulletin of the Korean Mathematical Society
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    • v.61 no.1
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    • pp.161-193
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    • 2024
  • In this paper, we consider the asymptotic behavior of solutions for the partly dissipative reaction diffusion systems of the FitzHugh-Nagumo type with hereditary memory and a very large class of nonlinearities, which have no restriction on the upper growth of the nonlinearity. We first prove the existence and uniqueness of weak solutions to the initial boundary value problem for the above-mentioned model. Next, we investigate the existence of a uniform attractor of this problem, where the time-dependent forcing term h ∈ L2b(ℝ; H-1(ℝN)) is the only translation bounded instead of translation compact. Finally, we prove the regularity of the uniform attractor A, i.e., A is a bounded subset of H2(ℝN) × H1(ℝN) × L2µ(ℝ+, H2(ℝN)). The results in this paper will extend and improve some previously obtained results, which have not been studied before in the case of non-autonomous, exponential growth nonlinearity and contain memory kernels.

A Study on Evaluation and Analysis for IP VPN Model in IPv6 Transition Environment (IPv6 전이 환경에서 IP VPN 모델 분석과 평가에 대한 연구)

  • Kim, Hyung-J.;Yang, Jin-S.;Lee, Eun-S.;Kim, Hee-S.;Kim, Tae-K.;Chung, Tai-M.
    • The KIPS Transactions:PartC
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    • v.11C no.5
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    • pp.633-644
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    • 2004
  • For a smooth transition from IPv4 to IPv6 network, the research of transition mechanisms have been processing according to the various network situations. Therefore, we calculate the cost based on the VPN applicable model. Also, we present that conformance between the end point of VPN, the If encapsulation tunneling, applying position of translation mechanism and VPN applicable model are the factors which affect Costs.

Rational B-spline Approximation of Point Data For Reverse Engineering (점 데이타의 Rational B-spline 근사를 통한 역공학)

  • Lee, Hyun-Zic;Ko, Tae-Jo;Kim, Hee-Sool
    • Journal of the Korean Society for Precision Engineering
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    • v.16 no.5 s.98
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    • pp.160-168
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    • 1999
  • This paper describes one method of reverse engineering that machines a free form shape without descriptive model. A portable five-axes 3D CMM was used to digitize point data from physical model. After approximation by rational B-spline curve from digitized point data of a geometric shape, a surface was constructed by the skinning method of the cross-sectional design technique. Since a surface patch was segmented by fifteen part, surface merging was also implemented to assure the surface boundary continuity. Finally, composite surface was transferred to commercial CAD/CAM system through IFES translation in order to machine the modeled geometric shape.

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