• Journal of Microbiology and Biotechnology
• /
• 제30권9호
• /
• pp.1321-1334
• /
• 2020

Beef, pork, chicken and milk are considered representative protein sources in the human diet. Since the digestion of protein is important, the role of intestinal microflora is also important. Despite this, the pure effects of meat and milk intake on the microbiome are yet to be fully elucidated. To evaluate the effect of beef, pork, chicken and milk on intestinal microflora, we observed changes in the microbiome in response to different types of dietary animal proteins in vitro. Feces were collected from five 6-week-old pigs. The suspensions were pooled and inoculated into four different media containing beef, pork, chicken, or skim milk powder in distilled water. Changes in microbial communities were analyzed using 16S rRNA sequencing. The feces alone had the highest microbial alpha diversity. Among the treatment groups, beef showed the highest microbial diversity, followed by pork, chicken, and milk. The three dominant phyla were Proteobacteria, Firmicutes, and Bacteroidetes in all the groups. The most abundant genera in beef, pork, and chicken were Rummeliibacillus, Clostridium, and Phascolarctobacterium, whereas milk was enriched with Streptococcus, Lactobacillus, and Enterococcus. Aerobic bacteria decreased while anaerobic and facultative anaerobic bacteria increased in protein-rich nutrients. Functional gene groups were found to be over-represented in protein-rich nutrients. Our results provide baseline information for understanding the roles of dietary animal proteins in reshaping the gut microbiome. Furthermore, growth-promotion by specific species/genus may be used as a cultivation tool for uncultured gut microorganisms.

• 한국토양비료학회지
• /
• 제44권6호
• /
• pp.1176-1180
• /
• 2011

경남지역 논 토양의 미사질양토 11개소, 사양토 4개소, 양토 5개소를 선정하여 FAME 분석기법을 적용하여 미생물군집을 분석하였다. 곰팡이 지방산 함량은 양토가 $76nmol\;g^{-1}$로서 사양토 $45nmol\;g^{-1}$에 비해 유의적으로 많았다 (p<0.05). 토양 양이온 치환용량은 미사질양토가 $14.7cmol_c\;kg^{-1}$으로 사양토 $11.8cmol_c\;kg^{-1}$보다 유의적으로 높았다(p<0.05). cy19:0과 18:$1{\omega}7c$ 비율은 미사질양토가 0.77로 사양토 0.47 보다 유의적으로 높았다 (p<0.05). 방선균 군집은 양토가 1.34%로 사양토의 0.92%에 비해 유의적으로 많았다 (p<0.05).

• Journal of Microbiology and Biotechnology
• /
• 제29권9호
• /
• pp.1391-1400
• /
• 2019

Canine parvoviral enteritis (PVE) is an important intestinal disease of the puppies; however, the potential impact of the canine parvovirus (CPV) on the gut microbiota has not been investigated. Therefore, the aim of this study was to evaluate the gut microbial shifts in puppies naturally infected with CPV. Fecal samples were collected from healthy dogs and those diagnosed with PVE at 4, 6, 8, and 12 weeks of age. The distal gut microbiota of dogs was characterized using Illumina MiSeq sequencing of the bacterial 16S rRNA genes. The sequence data were analyzed using QIIME with an Operational Taxonomic Unit definition at a similarity cutoff of 97%. Our results showed that the CPV was associated with significant microbial dysbiosis of the intestinal microbiota. Alpha diversity and species richness and evenness in dogs with PVE decreased compared to those of healthy dogs. At the phylum level, the proportion of Proteobacteria was significantly enriched in dogs with PVE while Bacteroidetes was significantly more abundant in healthy dogs (p < 0.05). In dogs with PVE, Enterobacteriaceae was the most abundant bacterial family accounting for 36.44% of the total bacterial population compared to only 0.21% in healthy puppies. The two most abundant genera in healthy dogs were Prevotella and Lactobacillus and their abundance was significantly higher compared to that of dogs with PVE (p < 0.05). These observations suggest that disturbances of gut microbial communities were associated with PVE in young dogs. Evaluation of the roles of these bacterial groups in the pathophysiology of PVE warrants further studies.

• 한국수자원학회:학술대회논문집
• /
• 한국수자원학회 2021년도 학술발표회
• /
• pp.128-128
• /
• 2021

Most of the studies about stormwater low impact development technologies used generalized observations without fully understanding the mechanisms affecting the whole performance of the systems from catchment to the facility itself. At present, these LID technologies have been treated as black box due to fluctuating flow and environmental conditions affecting its operation and treatment performance. As such, the implications of microbial community to the overall performance of the tree-box filter were investigated in this study. Summer season was found to be the most suitable season for microorganism growth since more microorganism were found during this season. Least microorganism count was found in spring because of the plant growth during this season since plant penology influences the seasonal dynamics of soil microorganisms. Litterfall during fall season might have affected the microorganism count during winter since, during this season, the compositional variety of soil organic matter changes affecting growth of soil microbial communities. Microbial analyses of sediment samples collected in the system revealed that the most dominant microorganism phylum is Proteobacteria in all the seasons in both inlet and outlet comprising 37% to 47% of the total microorganism count. Proteobacteria was followed by Acidobacteria, Actinobacteria and Chloroflexi which comprises 6% to 20%, 9% to 20% and 2% to 27%, respectively of the total microorganism count for each season. These findings were useful in optimizing the design and performance of tree box filters considering physical, chemical and biological pollutant removal mechanisms.

• Animal Bioscience
• /
• 제37권4호
• /
• pp.655-667
• /
• 2024

Objective: This study aimed to assess the impact of a hydroethanolic extract of walnut green husks (WGH) on rumen fermentation and the diversity of bacteria, methanogenic archaea, and fungi in sheep fed a high-concentrate diet. Methods: Five healthy small-tailed Han ewes with permanent rumen fistula were selected and housed in individual pens. This study adopted a self-controlled and crossover design with a control period and an experimental period. During the control period, the animals were fed a basal diet (with a ratio of concentrate to roughage of 65:35), while during the treatment period, the animals were fed the basal diet supplemented with 0.5% hydroethanolic extract of WGH. Fermentation parameters, digestive enzyme activities, and microbial diversity in rumen fluid were analyzed. Results: Supplementation of hydroethanolic extract of WGH had no significant effect on feed intake, concentrations of total volatile fatty acids, isovalerate, ammonia nitrogen, and microbial protein (p>0.05). However, the ruminal pH, concentrations of acetate, butyrate and isobutyrate, the ratio of acetate to propionate, protozoa count, and the activities of filter paper cellulase and cellobiase were significantly increased (p<0.05), while concentrations of propionate and valerate were significantly decreased (p<0.05). Moreover, 16S rRNA gene sequencing revealed that the relative abundance of rumen bacteria Christensenellaceae R7 group, Saccharofermentans, and Ruminococcaceae NK4A214 group were significantly increased, while Ruminococcus gauvreauii group, Prevotella 7 were significantly decreased (p<0.05). The relative abundance of the fungus Pseudomonas significantly increased, while Basidiomycota, Fusarium, and Alternaria significantly decreased (p<0.05). However, there was no significant change in the community structure of methanogenic archaea. Conclusion: Supplementation of hydroethanolic extract of WGH to a high-concentrate diet improved the ruminal fermentation, altered the structure of ruminal bacterial and fungal communities, and exhibited beneficial effects in alleviating subacute rumen acidosis of sheep.

• 유기물자원화
• /
• 제26권4호
• /
• pp.31-43
• /
• 2018

본 연구는 유기 농경지의 토양 및 양분관리 방법으로 가축분과 풋거름(헤어리베치)공급, 윤작 시스템. 그리고 경운 및 무경운 처리가 토양환경에 미치는 영향을 구명하고자 수행하였다. 신규 옥수수 재배 토양의 양분공급원으로 가축분 퇴비, 헤어리베치와 같은 유기물 공급이 화학비료 처리에 비해 토양 유기물 함량을 높이며 토양의 미생물 밀도와 미생물체량 C함량을 증가시키는 것을 알 수 있었다. 또한 토양 미생물 군집의 기능적 다양성이 증가하는 것을 확인하였다. 윤작재배 효과로 토양 화학성은 처리간의 차이가 뚜렷하게 나타나지 않았지만 옥수수-밀, 옥수수-헤어리베치 윤작 처리구가 옥수수 단작 처리구보다 토양의 미생물체량 C 함량과 종 다양성 지수가 높은 경향을 보였다. 경운 여부에 따른 토양 화학성은 처리간의 뚜렷한 차이를 나타내지 않았다. 토양 미생물 군집의 기질 이용에서 무경운이 경운처리 보다 다소 높게 나타났지만 통계적인 유의차는 없었다. 처리에 따른 토양의 화학성과 미생물상간의 요인간 상관관계 분석 결과, 토양 유기물 함량과 치환성 칼륨 함량은 기질 이용도, 기질 풍부도와 양의 상관관계를 보였다. 이러한 결과로부터 가축분 퇴비, 헤어리베치와 같은 유기물 시용으로 옥수수 재배 토양의 화학성 및 미생물상에 긍정적인 효과를 나타낸 것으로 판단되었다.

• 생명과학회지
• /
• 제33권7호
• /
• pp.565-573
• /
• 2023

숙주 동물과 동물의 장내 미생물의 건강 또는 생산성에 대한 연구결과를 미루어 볼 때, 가축 동물의 장내 미생물에 대한 연구는 매우 중요하다. 본 연구는 국내에서 사육되는 젖소 중 홀스타인 종과 저지종 젖소의 장내 미생물을 분석하고 차세대 염기서열 분석을 통해 젖소 종에 따른 장내 미생물 군집 구조의 차이를 규명하고자 하였다. 젖소의 원유 생산과 관련있는 것으로 알려진 종 풍부도와 종 다양성 지수 분석 결과 대부분의 풍부도 및 다양성 지수가 홀스타인 종 보다 저지 종에서 유의한 수준으로 높은 것으로 나타났으나, 종 간의 계통학적 거리를 합산하여 산출되는 phylogenetic diversity 지수는 낮은 것으로 나타났다. 미생물 분포 분석 결과 홀스타인과 저지 종의 두 집단 장내 미생물 군집 구조가 다른 것으로 나타났다. 두 종의 젖소에서 과(family) 수준의 다양한 장내 미생물간의 분포에 상관관계가 있는 것으로 나타났으며, 특히 저지 종의 장내 미생물은 다양한 미생물 분포 사이에 매우 유의한 수준의 상관관계가 있는 것으로 나타났다. 두 종의 젖소 장내 미생물 구조에 차이가 있는지 확인하기 위해 beta-diversity 분석을 수행하였으며, PCoA 분석과 UPGMA clustering 분석 결과 두 그룹의 cluster가 명확히 분리되는 것을 시각적으로 확인하였으며, PERMANOVA 분석 결과 두 종의 장내 미생물 군집 구조가 통계적으로 매우 유의한 수준의 차이가 있는 것으로 나타났다. 두 젖소 종의 장내 미생물 군집 구조 차이에 기여하는 미생물을 확인하기 위해 LEfSe 분석을 수행하였으며, 그 결과 Firmicutes, Bacilli, Moraxellaceae, Pseudomonadales 등의 상대적인 미생물 분포 차이가 두 그룹간 장내 미생물 군집 구조 차이에 가장 큰 영향을 미치는 것으로 나타났다.

• Asian-Australasian Journal of Animal Sciences
• /
• 제31권9호
• /
• pp.1464-1473
• /
• 2018

Objective: To describe in-depth sequencing, the bacterial community diversity and its succession during ensiling of whole-plant maize and subsequent exposure to air. Methods: The microbial community dynamics of fermented whole-plant maize for 60 days (sampled on day 5, 10, 20, 40, 60) and subsequent aerobic exposure (sampled on day 63 after exposure to air for 3 days) were explored using Illumina Miseq sequence platform. Results: A total of 227,220 effective reads were obtained. At the genus level, there were 12 genera with relative abundance >1%, Lactobacillus, Klebsiella, Sporolactobacillus, Norank-c-cyanobacteria, Pantoea, Pediococcus, Rahnella, Sphingomonas, Serratia, Chryseobacterium, Sphingobacterium, and Lactococcus. Lactobacillus consistently dominated the bacterial communities with relative abundance from 49.56% to 64.17% during the ensiling process. Klebsiella was also an important succession bacterium with a decrease tendency from 15.20% to 6.41% during the ensiling process. The genus Sporolactobacillus appeared in late-ensiling stages with 7.70% abundance on day 40 and 5.32% on day 60. After aerobic exposure, the Lactobacillus decreased its abundance from 63.2% on day 60 to 45.03% on d 63, and Klebsiella from 5.51% to 5.64%, while Sporolactobacillus greatly increased its abundance to 28.15%. These bacterial genera belong to 5 phyla: Firmicutes (relative abundance: 56.38% to 78.43%) was dominant, others were Proteobacteria, Bacteroidetes, Cyanobacteria, and Actinobacteria. The bacterial communities clearly clustered into early-ensiling (d 5), medium-ensiling (d 10, d 20), late-ensiling (d 40, d 60), and aerobic exposure (d 63) clusters, with early- and late-ensiling communities more like each other than to the aerobic exposure communities. Conclusion: High-throughput sequencing based on 16S rRNA genes proved to be a useful method to explore bacterial communities of silage. The results indicated that the bacterial communities varied during fermentation and more dramatically during aerobic exposure. The study is valuable for understanding the mechanism of population change and the relationship between bacteria and ensilage characteristics.

• Mycobiology
• /
• 제45권3호
• /
• pp.150-159
• /
• 2017

This study analyzed the distribution of endophytic fungi in 3 coastal environments with different climatic, geographical, and geological characteristics: the volcanic islands of Dokdo, the East Sea, and the West Sea of Korea. The isolated fungal endophytes were characterized and analyzed with respect to the characteristics of their host environments. For this purpose, we selected common native coastal halophyte communities from three regions. Molecular identification of the fungal endophytes showed clear differences among the sampling sites and halophyte host species. Isolates were also characterized by growth at specific salinities or pH gradients, with reference to previous geographical, geological, and climate studies. Unlike the East Sea or West Sea isolates, some Dokdo Islands isolates showed endurable traits with growth in high salinity, and many showed growth under extremely alkaline conditions. A smaller proportion of West Sea coast isolates tolerate compared to the East Sea or Dokdo Islands isolates. These results suggest that these unique fungal biota developed through a close interaction between the host halophyte and their environment, even within the same halophyte species. Therefore, this study proposes the application of specific fungal resources for restoring sand dunes and salt-damaged agricultural lands and industrialization of halophytic plants.

• 미생물학회지
• /
• 제50권4호
• /
• pp.376-380
• /
• 2014

경상북도 영덕군과 포항시에 위치한 해수욕장 주변에서 생활하수나 생활쓰레기 등의 환경조건이 해변모래에 서식하는 미생물 분포에 어떤 영향을 미치는지를 조사하기 위하여, 10월 중순에 12곳의 해변모래를 채취하여 16S rRNA 유전자를 pyrosequencing 방법으로 분석하였다. 해수 부근의 청결한 모래에는 Acidobacteria, 담수 부근의 모래에는 Proteobacteria, 생활하수 부근의 모래에는 Cyanobacteria, 해변공원 부근의 모래에는 Bacteroidetes 그룹이 20-90% 정도로 높게 분포하였고, 생활하수가 해수와 합해지는 해변모래에서는 Actinobacteria, Chlorobi, Deferribacteres, Deinococcus-thermus, Firmicutes, Gemmatimonadetes, Nitrospirae, Verrucomicrobia 그룹이 1-5% 정도로 낮게 분포하였다.