• Title/Summary/Keyword: Mapping Function

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ShcD interacts with TrkB via its PTB and SH2 domains and regulates BDNF-induced MAPK activation

  • You, Yuangang;Li, Weiqi;Gong, Yanhua;Yin, Bin;Qiang, Boqin;Yuan, Jiangang;Peng, Xiaozhong
    • BMB Reports
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    • v.43 no.7
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    • pp.485-490
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    • 2010
  • Neurotrophins regulate many aspects of neuronal function through activation of the high affinity Trk receptors. Shc family proteins are implicated in the coupling of RTK to the Ras/mitogen-activated protein kinase signaling cascade. Here we report that the fourth Shc family member, ShcD, associates with TrkB receptor and regulates BDNF-induced MAPK activation. Yeast two-hybrid assay and Co-IP experiments demonstrate ShcD interacts with TrkB in a kinase-activity-dependent manner. Confocal analysis shows ShcD cololizes well with TrkB in transfected 293T cells. Subsequent mapping experiments and mutational analysis indicate that both PTB and SH2 domains are capable of binding to TrkB and PTB domain binds to TrkB NPQY motif. Furthermore, ShcD is involved in BDNF-induced MAPK activation. In summary, we demonstrate that ShcD is a substrate of TrkB and mediates TrkB downstream signaling pathway.

On-line Nonlinear Principal Component Analysis for Nonlinear Feature Extraction (비선형 특징 추출을 위한 온라인 비선형 주성분분석 기법)

  • 김병주;심주용;황창하;김일곤
    • Journal of KIISE:Software and Applications
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    • v.31 no.3
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    • pp.361-368
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    • 2004
  • The purpose of this study is to propose a new on-line nonlinear PCA(OL-NPCA) method for a nonlinear feature extraction from the incremental data. Kernel PCA(KPCA) is widely used for nonlinear feature extraction, however, it has been pointed out that KPCA has the following problems. First, applying KPCA to N patterns requires storing and finding the eigenvectors of a N${\times}$N kernel matrix, which is infeasible for a large number of data N. Second problem is that in order to update the eigenvectors with an another data, the whole eigenspace should be recomputed. OL-NPCA overcomes these problems by incremental eigenspace update method with a feature mapping function. According to the experimental results, which comes from applying OL-NPCA to a toy and a large data problem, OL-NPCA shows following advantages. First, OL-NPCA is more efficient in memory requirement than KPCA. Second advantage is that OL-NPCA is comparable in performance to KPCA. Furthermore, performance of OL-NPCA can be easily improved by re-learning the data.

Fluid-Structure Interaction Analysis of High Aspect Ratio Wing for the Prediction of Aero-elasticity (유체-구조 연계 해석기법을 이용한 세장비가 큰 비행체 날개의 공탄성 해석)

  • Lee, Ki-Du;Lee, Young-Shin;Lee, Dae-Yearl;Lee, In-Won
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.38 no.6
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    • pp.547-556
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    • 2010
  • For the safety of aircraft and accuracy of bombs, many companies have researched the new concept of adaptive kit to flying-bombs. For the long distance flying, it's normally used deployed high-aspect ratio wing because of limited volume. The probabilities of large elastic deformation and flutter are increased due to decreased stiffness of high-aspect ratio wing. In this paper, computational fluid dynamics and computational structure dynamics interaction methodology are applied for prediction of aerodynamic characteristics. FLUENT and ABAQUS are used to calculate fluid and structural dynamics. Code-bridge was made base on the compactly supported radial basis function to execute interpolation and mapping. There are some differences between rigid body and fluid-structure interaction analysis which are results of aerodynamics characteristics due to structural deformation. Small successive vibration was observed by interaction.

Cloning and Spatiotemporal Expression Analysis of Bombyx mori elav, an Embryonic Lethal Abnormal Visual Gene

  • Wang, Geng-Xian;Liu, Ying;Sim, Yang-Hu;Zhang, Sheng-Xiang;Xu, Shi-Qing
    • International Journal of Industrial Entomology and Biomaterials
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    • v.18 no.2
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    • pp.113-120
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    • 2009
  • Embryonic lethal abnormal visual (elav) is a lethal gene in Drosophila inducing the abnormal development and function of nervous system. We cloned a Bm-elav gene by bioinformatics and biological experiment, based on sequence of ELAV protein and dbEST of Bombyx mori. The full-length of Bm-elav cDNA is 1498 bp, contains a 906 bp open read frame (ORF) encoding a precursor of 301 amino acid residues with a calculated molecular weight of 34 kDa and pI of 8.99. Bm-ELAV protein precursor contains three RNA recognition motifs (RRM) in $24{\sim}91$, $110{\sim}177$ and $222{\sim}295$ bit amino acid residues respectively, and belongs to RNA-binding protein family. Bm-ELAV shared varying positives, ranging from 56% to 60% (Identities from 41% to 45%), with RRM from other species of Xenopus tropicalis, Apis mellifera, Tribolium castaneum, Branchiostoma belcheri and Drosophila. Gene localization indicated that Bm-elav is a single-copy gene, gene mapping within 12-chromosome from 7916.68 knt to 7918.16 knt region of nscaf2993. Spatiotemporal expressions pattern analysis revealed that Bm-elav expressed higher in most tested tissues and developmental stages in whole generation, such as silk gland, fat body, midgut, hemopoietic organ and ovary, but almost no expression in terminated diapause eggs. This suggested that the expression of Bm-elav in early developmental embryonic stages might induce abnormal development like in Drosophila. Cloning of the Bm-elav gene enables us to test its potential role in controlling pests by transferring the gene into field lepidopteran insects in the future.

A Study on the Call-Setup and Message Mapping for Interworking between H.323 and SIP (H.323과 SIP간의 상호 연동을 위한 호 설정과 메시지 매핑에 관한 연구)

  • Kim, Jeong-Seok;Tae, Won-Kwi;Kim, Jeong-Ho;Ban, Jin-Yang
    • Journal of the Korea Computer Industry Society
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    • v.5 no.9
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    • pp.1017-1024
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    • 2004
  • In this paper, we propose the progressed interworking method between H.323 and SlP, then explain the improved property. The VolP(Voice over Internet Protocol) technology which is able to use a voice service through internet is more cheaper then existing telephone charges, and is easil)· accept the various of multimedia services from internet. Previous connectionmethod of VoIP used H.323 protocol, but it is very complex to connection establishment. so, the SIP(Session Initiation Protocol) protocol that propose in SIP-Working Group is in use recently. Therefore, we need new interworking methodology between H.323 and SIP Products. In this thesis, the progress interworking method between H.323 and SIP are Propose, then interpret unnecessary packet delay for call setup and improved feature of message exchange.

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A Dilation-Improved Embedding of Pyramids into 3-Dimensional Meshes (피라미드의 3-차원 메쉬로의 신장율 개선 임베딩)

  • Chang, Jung-Hwan
    • The KIPS Transactions:PartA
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    • v.10A no.6
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    • pp.627-634
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    • 2003
  • In this paper, we consider a graph-theoretic problem,, the so-called "graph embedding problem" that maps the vertices and edges of the given guest graph model into the corresponding vertices and paths of the host graph under the condition of maintaining better performance parameters such as dilation, congestion, and expansion. We firstly propose a new mapping function which can embed the pyramid model with height N into the 3-dimensional mesh massively parallel processor system with the height $(4^{(N+1)/3}+2)/3$ and the regular 2-dimensional mesh of one side $2^{(2N-1)/3}$, and analyze the performance of the embedding in terms of the dilation parameter that reflects the number of communication steps between two adjacent vertices under the embedding. We prove that the dilation of the embedding is $2{\cdot}4^{(N-2)/3}+4)/3$. This is superior to the previous result of $4^{N+183}+2)/3$ under the same condition.condition.

Integrated Information Retrieval with Metadata Interface for Heterogeneous Distributed XML Documents (메타정보 인터페이스를 이용한 이질 구조 분석 XML문서 통합 검색)

  • 류성준;황재문;김태훈;남영광
    • Journal of KIISE:Software and Applications
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    • v.31 no.11
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    • pp.1505-1518
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    • 2004
  • We propose an extremely light DDXMI approach for semi-automated integration of both structurally and semantically heterogeneous distributed XML documents. In the proposed prototype, a DDXMI(Distributed Documents XML Metadata Interface) is defined and a user interface generator is developed. The prototype takes sources' DTDs as inputs and generates a friendly graphical user interface for the application users. The user can easily describe the semantic mapping between the integrated virtual database DTD and sources' DTDs through assigning index numbers and specifying associated function names so that the DDXMI based on the mappings is automatically generated. Quilt is selected as the XML query language which processes user queries according to the DDXMI. It is assumed that the application users know what they want from the different sources, that is, they have their own integrated database schema in their mind, and know the semantics of the involved XML databases. A small-size global DTD and a mid-size global DTB are generated to verify the rluery generation and retrieval results with 3 XML document databases, that is, Master/ph.D thesis, research reports, and journal databases. The system has been developed with JavaCC and Java Servelet.

A Novel Road Segmentation Technique from Orthophotos Using Deep Convolutional Autoencoders

  • Sameen, Maher Ibrahim;Pradhan, Biswajeet
    • Korean Journal of Remote Sensing
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    • v.33 no.4
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    • pp.423-436
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    • 2017
  • This paper presents a deep learning-based road segmentation framework from very high-resolution orthophotos. The proposed method uses Deep Convolutional Autoencoders for end-to-end mapping of orthophotos to road segmentations. In addition, a set of post-processing steps were applied to make the model outputs GIS-ready data that could be useful for various applications. The optimization of the model's parameters is explained which was conducted via grid search method. The model was trained and implemented in Keras, a high-level deep learning framework run on top of Tensorflow. The results show that the proposed model with the best-obtained hyperparameters could segment road objects from orthophotos at an average accuracy of 88.5%. The results of optimization revealed that the best optimization algorithm and activation function for the studied task are Stochastic Gradient Descent (SGD) and Exponential Linear Unit (ELU), respectively. In addition, the best numbers of convolutional filters were found to be 8 for the first and second layers and 128 for the third and fourth layers of the proposed network architecture. Moreover, the analysis on the time complexity of the model showed that the model could be trained in 4 hours and 50 minutes on 1024 high-resolution images of size $106{\times}106pixels$, and segment road objects from similar size and resolution images in around 14 minutes. The results show that the deep learning models such as Convolutional Autoencoders could be a best alternative to traditional machine learning models for road segmentation from aerial photographs.

A Study on the Ultrasonic Nondestructive Evaluation of Carbon/Carbon Composite Disks

  • Im, Kwang-Hee;Jeong, Hyun-Jo;Yang, In-Young
    • Journal of Mechanical Science and Technology
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    • v.14 no.3
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    • pp.320-330
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    • 2000
  • It is desirable to perform nondestructive evaluation (NDE) to assess material properties and part homogeneity because the manufacturing of carbon/carbon brake disks requires complicated and costly processes. In this work several ultrasonic techniques were applied to carbon/carbon brake disks (322mm ad, 135mm id) for the evaluation of spatial variations in material properties that are attributable to the manufacturing process. In a large carbon/carbon disk manufactured by chemical vapor infiltration (CYI) method, the spatial variation of ultrasonic velocity was measured and found to be consistent with the densification behavior in CYI process. Low frequency (e.g., 1-5MHz) through-transmission scans based on both amplitude and time-of-flight of the ultrasonic pulse were used for mapping out the material property inhomogeneity. Images based on both the amplitude and the time-of-flight of the transmitted ultrasonic pulse showed significant variation in the radial direction. The radial variations in ultrasonic velocity and attenuation were attributed to a density variation caused by the more efficient densification of pitch impregnation near the id and od and by the less efficient densification away from the exposed edged of the disk. Ultrasonic velocities in the edges of the disk. Ultrasonic velocities in the thickness direction were also measured as a function of location using dry-coupling transducers ; the results were consistent with the densification behavior. However, velocities in the in-plane directions (circumferential and radial) seemed to be affected more by the relative contents of fabric and chopped fiber, and less by the void content.

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Transcriptome Analysis of Bacillus subtilis by DNA Microarray Technique

  • Kang, Choong-Min;Yoshida, Ken-Ichi;Matsunaga, Masayuki;Kobayashi, Kazuo;Ueda, Minoru;Ogasawara, Naotake;Fujita, Yasutaro
    • Proceedings of the Korean Society of Life Science Conference
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    • 2000.06a
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    • pp.3-8
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    • 2000
  • The complete genome sequence of a Gram-positive bacterium .Bacillus subtilis has recently been reported and it is now clear that more than 50% of its ORFs have no known function (1). To study the global gene expression in B. subtilis at single gene resolution, we have tested the glass DNA microarrays in a step-wise fashion. As a preliminary experiment, we have created arrays of PCR products for 14 ORF whose transcription patterns have been well established through transcriptional mapping analysis. We measured changes in mRNA transcript levels between early exponential and stationary phase by hybridizing fluorescently labeled cDNA (with Cy3-UTP and Cy5-UTP) onto the array. We then compared the microarray data to confirm that the transcription patterns of these genes are well consistent with the known Northern analysis data. Since the preliminary test has been successful, we scaled up the experiments to ${\sim}$94% of the 4,100 annotated ORFs for the complete genome sequence of B. subtilis. Using this whole genomic microarray, we searched genes that are catabolite-repressive and those that are under the control of ${\sigma}^{Y}$, one of the functionally unknown ECF sigma factors. From these results, we here report that we have established DNA microarray techniques that are applicable for the whole genome of B. subtilis.

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