• Title/Summary/Keyword: LuxR

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Isolation and Identification of a Purple, Non-Sulfur Bacterium from Korea Coast

  • Cha, Mi-Seon;Kim, Gi-Han;Son, Hyeong-Sik;Lee, Na-Eun;Lee, Jeong-Eun;Jo, Sun-Ja;Lee, Sang-Jun
    • 한국생물공학회:학술대회논문집
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    • 2003.04a
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    • pp.409-411
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    • 2003
  • A species of facultative photo-organotrophic, purple, non-sulfur bacterium was isolated from the west coast and the south coast 47 area of Korea at 2001 September. Separated 13 samples of changes with red color under $28{\sim}32\;^{\circ}C$, 3000 lux, anaerobe conditions for 7 days cultivated in Basal medium. For a pure isolation from 13 samples it used agar-shake tube method (0.4 % agar) and it separated 5 strains through 13-repetition test. The RAPD(Random Amplified Polymorphic DNA)-PCR result of strains (EGH-9, EGH-13, EGH-23, EGH-24, EGH-30) that EGH-24 and EGH-30 was same strain. For wastewater biodegradation test that 4 isolation strains cultivated in synthesis wastewater in 7 days. EGH-24 was high 63000 mg/L (CODcr) to 43400 mg/L (CODcr). EGH-24 was selected with efficient wast water treated strain. Based on the results obtained from morphology, nutrient requirements, major bacteriochlorophyll content, 165-rDNA phylogenetic analysis, this strain may be identified as a new strain of the genus Rhodobacter and named Rhodobacter sp. EGH-24.

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Quorum-Sensing Mechanisms in Bacterial Communities and Their Potential Applications (세균의 의사 소통(Quorum-Sensing) 기구와 그 잠재적 응용성)

  • Yoon, Sung-Sik
    • Food Science of Animal Resources
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    • v.26 no.3
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    • pp.402-409
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    • 2006
  • Although microorganisms are, in fact, the most diverse and abundant type of organism on Earth, the ecological functions of microbial populations remains poorly understood. A variety of bacteria including marine Vibrios encounter numerous ecological challenges, such as UV light, predation, competition, and seasonal variations in seawater including pH, salinity, nutrient levels, temperature and so forth. In order to survive and proliferate under variable conditions, they have to develop elaborate means of communication to meet the challenges to which they are exposed. In bacteria, a range of biological functions have recently been found to be regulated by a population density-dependent cell-cell signaling mechanism known as quorum-sensing (QS). In other words, bacterial cells sense population density by monitoring the presence of self-produced extracellular autoinducers (AI). N-acylhomoserine lactone (AHL)-dependent quorum-sensing was first discovered in two luminescent marine bacteria, Vibrio fischeri and Vibrio harveyi. The LuxI/R system of V. fischeriis the paradigm of Gram-negative quorum-sensing systems. At high population density, the accumulated signalstrigger the expression of target genes and thereby initiate a new set of biological activities. Several QS systems have been identified so far. Among them, an AHL-dependent QS system has been found to control biofilm formation in several bacterial species, including Pseudomonas aeruginosa, Aeromonas hydrophila, Burkholderia cepacia, and Serratia liquefaciens. Bacterial biofilm is a structured community of bacterial cells enclosed in a self-produced polymeric matrix that adheres to an inert or living surface. Extracellular signal molecules have been implicated in biofilm formation. Agrobacterium tumefaciens strain NT1(traR, tra::lacZ749) and Chromobacterium violaceum strain CV026 are used as biosensors to detect AHL signals. Quorum sensing in lactic acid bacteria involves peptides that are directly sensed by membrane-located histidine kinases, after which the signal is transmitted to an intracellular regulator. In the nisin autoregulation process in Lactococcus lactis, the NisK protein acts as the sensor for nisin, and NisR protein as the response regulator activatingthe transcription of target genes. For control over growth and survival in bacterial communities, various strategies need to be developed by which receptors of the signal molecules are interfered with or the synthesis and release of the molecules is controlled. However, much is still unknown about the metabolic processes involved in such signal transduction and whether or not various foods and food ingredients may affect communication between spoilage or pathogenic bacteria. In five to ten years, we will be able to discover new signal molecules, some of which may have applications in food preservation to inhibit the growth of pathogens on foods.

A Survey on House Sparrow Population Decline at Bandel, West Bengal, India

  • Ghosh, Samik;Kim, Ki-Hyun;Bhattacharya, R.
    • Journal of the Korean earth science society
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    • v.31 no.5
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    • pp.448-453
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    • 2010
  • The population of House sparrow (Passer domesticus), once a very common bird, has declined markedly in most parts of the world including India. Sparrows were distributed widely in the district Hoogly, West Bengal, India. However over the past few decades, they became not so common in this part of the wo rld. A study has been conductedto establish the database for their current population and to assess the possible causes of their decline at Bandel ($22^{\circ}$52'22''N/$88^{\circ}$22'53''E) placed beside the river Hoogly from September 2008 to May 2009. After prolonged searching, a relatively dense population of sparrow (total subject 270) was found in busy areas of railway station and a nearby market in Bandel. The behavior of these birds was studied extensively from early morning to late night. The noise level of the area varied from 35 to 95 dB with an average of 70.6 dB from 04:30 am-10:30 pm, IST. It was also observed that the sparrows took rest on the site of the tree where the illumination level was low (30-45 lux). Sparrows residing at the Bandel station are habituated with the loud noise, being undisturbed by passing trains. Thus, it can be concluded that in spite of heavy noise of trains, crowdy travelers, and lack of nest sites, they remain at the station because of availability of food in the nearby roadside market. Based on this observation, sound pollution and availability of food are not responsible for their decline.

중요민속자료 제112호 장흥임씨 수의류의 보존처리

  • An, Hui-Gyun;Han, Seong-Hui;Jeong, Hui-Jin;Kim, Gi-Seop
    • 보존과학연구
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    • s.6
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    • pp.96-110
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    • 1985
  • This report is briefly thied to introduce the kinds of clothes for the body of deceased and special features of remains in the era of the middle of Yidynasty found in Changheung IM's tomb, and some remarks related to the conservation treatment for shrouds as well. The contents of this report are summed up as follows:1. Included with the clothes of dead body of IM's clan were 2 pcs. Of woman's jacket, 2 pcs. of underpants, 1pcs. of single layered overcoat twithout cotton, 1pcs.of women's overcoat with a single layered thin cotton inside, women's socks, cushoned mattress, straw shoes and other hemp fabrics etc. By the observation of these remains, it is considered that they dressed the deceased with new cloth taken from the unsuals not prepared specially and stored beforehand for such as occasion as does it nowadays.2. As to the conservation treatment, the materials were comparatively good and so they employed general tank washing method with special neutrality liquid soap(made by Lab, of Household Products, Pacific R & D Center) for cleaning imbrued matrials on the clothes. After cleaning and drying naturally at a shade place, remains put into apaulowania tree box were fumigated by mixed gas (M. B. + E. O.) for prevention of damages from fungi and insects.3. Desirable environment control for scientific conservation of such kinds of cellulose textiles is to be illuminated at below 50Lux, temperature 16-18℃, relative humidity 45-60%($\pm$4%) and removed the dust. For the prevention of the damaging fungi and insects, it is desirable to fumigate by mixed gas (M.B.+E.O.) once a year.

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Characterizations of Water Quality, and Potential Relationships of Nitrogen Components and Microbes in the Mulgol Pond on Dokdo, Korea (독도 물골의 수질 특성 및 질소화합물과 미생물간의 잠재적 관계)

  • WOO, SANG YOON;LEE, HYEON BEEN;JEONG, DONG HYUK;AN, JE BAK;YOUN, JIN SUK;PAK, JAE-HONG;PARK, JONG SOO
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.26 no.2
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    • pp.124-134
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    • 2021
  • Water in the Mulgol pond on Dokdo (island), Korea, was historically used for drinking water, but now it has been no longer used for this purpose due to regionally low water quality. Since 2007, this pond has been covered with a metal lid to protect from pollutants of seabirds, indicating limited light penetration into the Mulgol pond. Here, we investigated water quality in the pond and potential relationships of nitrogen components and microbes in May, June, August, and November 2020. The source salinity ranged from 1.39 to 1.57 psu. Suspended solids (0.8~5.1 mg L-1) and chlorophyll-a (<0.01~0.49 ㎍ L-1) remained low. The concentration of dissolved inorganic nitrogen (DIN) was between 35.9 and 47.2 mg L-1. Thus, water in the Mulgol pond proves to be brackish water with low chlorophyll-a and high nutrients. This unique environment may be established by limited light intensity, sea fog (or seawater), and fecal pellets from many seabirds. Although the light source (800~8000 lux) was exposed to the four subsamples, chlorophyll-a concentrations were below <0.5 ㎍ L-1 during the incubation periods. This result suggests that the biomass of phytoplankton does not increase along with an increase in light intensity. Furthermore, the content of nitrate constituted more than 90% of DIN, and a significant negative correlation between nitrate concentration and bacterial abundance was shown in May and June 2020 during the light exposure experiments (R=-0.762, p<0.05). Thus, it is possible that bacteria may be a significant agent to reduce nitrate concentration in the Mulgol pond, the relationship between nitrate concentration and bacterial abundance may vary seasonally.

Quality Characteristics of Pleurotus eryngii Cultivated with Different Wavelength of LED Lights (LED광의 파장을 달리하여 재배한 새송이버섯의 품질특성)

  • Kim, Do-Hee;Choi, Hye-Jin;Jo, Woo-Sik;Moon, Kwang-Deog
    • Food Science and Preservation
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    • v.19 no.3
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    • pp.354-360
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    • 2012
  • The effect of the wavelength of the light emitted by the light-emitting diode (LED) on the growth characteristics and physicochemical and sensory qualities of Pleurotus eryngii were investigated. Pleurotus eryngii were grown under different light sources: blue light (450 nm), red light (650 nm), green light (525 nm), UV-A (365 nm), and mixed light ($B^*R$, $B^*G$, $R^*G$, $B^*R^*G^*UV-A$). The quantity of LED light was set up at 50% (LED: 64.9-108.0 $pmolm-2{\cdot}s-1$;fluorescentlight:11.7lux). Fluorescent light was used as control. There were no significant differences in the flesh firmness. In the case of the Pleurotuseryngii cultivated under red, green, and mixed light ($R^*G$), the color of the pileus and the length of the stipe were similar to those of the control group. The sensory scores were not significantly different between the LED lights (red, green, and $R^*G$) and the control. Among the three LED light conditions, the sample cultivated under red light recorded the highest score. The samples under UV-A, blue, and mixed light ($B^*R$, $B^*G$, $B^*R^*G^*U$) had a dark pileus color and had a short stipe. These results showed that the wavelength of LED light affected the growth and quality characteristics of Pleurotus eryngii, and that using red LED light is preferable for the cultivation of Pleurotus eryngii with better quality.

Developmental Characteristics of Zophobas atratus (Coleoptera: Tenebrionidae) at Varing Temperatures (온도에 따른 아메리카왕거저리(Zophobas atratus)의 발육 특성)

  • Kwak, Kyu-Won;Kim, Sun Young;Lee, Kyeong Yong;Yoon, Hyung Joo
    • Korean journal of applied entomology
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    • v.61 no.2
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    • pp.357-368
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    • 2022
  • We investigated the developmental characteristics of super mealworm (Coleoptera: Tenebrionidae) at four different temperatures (25℃, 27℃, 30℃, and 33℃). The rearing conditions were 9L/15D, 65% RH, and 1,330 to 1,800 lux with wheat bran. The length of developmental period of 1 to 18 instars at each temperature showed that 30℃ was the shortest at 120.0±5.8 days, compared to that at 27℃ (132.6±10.7 days), 33℃ (136.5±9.2 days), and 25℃ (156.7±7.5 days). The larval developmental period was statistically significantly longer at 25℃, 27℃, and 30℃ compared to the length at 33℃. However, the death rate of larvae at 33℃ was 2.7-3.3 times higher than the rate at other temperatures. Body weight was heaviest at 30℃ followed by 27℃, 33℃, and 25℃. The patterns of head capsule, body capsule, and body length were similar to that of body weight. Regression analyses of developmental period, larval body weight, and length according to temperature revealed 29-30℃ as the most suitable temperature. The prepupa rate was 43.1% in 17 instars, 30.3% in 18 instars, 15.4% in 16 instars, 7.1% in 19 instars, 2.2% in 15 instars, and 1.9% in 20 instars, accounting for 88.8% in 16-18 instars. Prepupal period was longer at lower temperatures. For the average prepupal period of 15-18 instars, prepupa time was 18.8±1.9 days at 27℃, 18.8±2.3 days at 30℃, 23.0±2.4 days at 33℃, and 23.1±2.9 days at 25℃. The average pupal period of females and males was 11.1±2.2 and 11.6±2.4 days, respectively. The data indicate that the most suitable rearing temperature of super mealworm was 30℃.

Analysis of whole genome sequencing and virulence factors of Vibrio vulnificus 1908-10 isolated from sea water at Gadeok island coast

  • Hee-kyung Oh;Nameun Kim;Do-Hyung Kim;Hye-Young Shin;Eun-Woo Lee;Sung-Hwan Eom;Young-Mog Kim
    • Fisheries and Aquatic Sciences
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    • v.26 no.9
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    • pp.558-568
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    • 2023
  • Vibrio vulnificus is an aquatic bacterium causing septicemia and wound infection in humans. To understand this pathogen at the genomic level, it was performed whole genome sequencing of a cefoxitin-resistant strain, V. vulnificus 1908-10 possessing virulence-related genes (vvhA, viuB, and vcgC) isolated from Gadeok island coastal seawater in South Korea. The genome of V. vulnificus 1908-10 consisted of two circular contigs and no plasmid. The total genome size was estimated to be 5,018,425 bp with a guanine-cytosine (GC) content of 46.9%. We found 119 tRNA and 34 rRNA genes respectively in the genome, along with 4,352 predicted protein sequences. Virulence factor (VF) analysis further revealed that V. vulnificus 1908-10 possess various virulence genes in classes of adherence, antiphagocytosis, chemotaxis and motility, iron uptake, quorum sensing, secretion system, and toxin. In the comparison of the presence/absence of virulence genes, V. vulnificus 1908-10 had fur, hlyU, luxS, ompU, pilA, pilF, rtxA, rtxC, and vvhA. Of the 30 V. vulnificus comparative strains, 80% of the C-genotype strains have all of these genes, whereas 40% of the E-genotype strains have all of them. In particular, pilA were identified in 80% of the C-type strains and 40% of the E-type strains, showing more difference than other genes. Therefore, V. vulnificus 1908-10 had similar VF characteristics to those of type C strains. Multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin of V. vulnificus 1908-10 contained 8 A-type repeats (GXXGXXXXXG), 25 B.1-type repeats (TXVGXGXX), 18 B2-type repeats (GGXGXDXXX), and 7 C-type repeats (GGXGXDXXX). The National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) showed that the RtxA protein of V. vulnificus 1908-10 had the effector domain in the order of cross-liking domain (ACD)-C58_PaToxP-like domain- α/β hydrolase-C58_PaToxP-like domain.

Isolation of Photosynthetic Bacterium, Rhodopseudomonas palustris JK-1 and Researches on IAA and Carotenoid Production (광합성세균 Rhodopseudomonas palustis 분리 및 IAA와 Carotenoid 생성에 관한 연구)

  • Kim, Yu-Kyoung;Cho, Young-Yun;Kang, Ho-Jun;Kim, Jung-Sun;Yang, Sung-Nyun;Jwa, Chang-sook
    • Korean Journal of Organic Agriculture
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    • v.25 no.4
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    • pp.843-859
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    • 2017
  • The JK-1 isolate which was the best producer of indole-3-acetic acid and carotenoid among the 388 strains isolated from 28 wetlands in Jeju, was identified to be Rhodopseudomonas palustirs belongs to a typical group of non sulfur purple bacteria based on 16S sRNA sequencing. This study investigated the effect of different cultural conditions of pH, temperature, agitation, light and aeration on growth, IAA and carotenoid production of photosynthetic bacterium JK-1 for optimization of IAA and carotenoid production. It was found that growth, IAA, carotenoid, and bacteriochlorophyll production with light (3,000~3,500 Lux) and agitation (100 rpm) showed better results than those with dark/static or dark/agitation (100 rpm) in anaerobic conditions. The optimal pH, temperature and agitation speed for cell growth were 7, $30^{\circ}C$, 150 rpm, for IAA production were 9, $30^{\circ}C$, 150rpm and for carotenoid production were 6, $25^{\circ}C$, 50 rpm, cultured for 72 h under anaerobic light, respectively. The growth and IAA production were high in aerobic culture compared with anaerocic culture, whereas carotenoid and bacteriochlorophyll content were decreased extremely in aerobic condition (0.5~1 vvm). Subsequently, the optimal culture conditions for JK-1 were selected with pH 7, $30^{\circ}C$ and 100 rpm under anaerobic light and the effect on plant growth was tested by pot assay. Inoculation of JK-1 with 3% (v/v) level caused increase in shoot and root dry weigh that varied from 20%~58% to 40%~28% in young radish in camparison to uninoculated treatment at 50 days of growth. The study suggests that the JK-1 isolate may serve as efficient biofertilizer inoculants to promote plant growth.