• Title/Summary/Keyword: Limit of Detection

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Cell-SELEX Based Identification of an RNA Aptamer for Escherichia coli and Its Use in Various Detection Formats

  • Dua, Pooja;Ren, Shuo;Lee, Sang Wook;Kim, Joon-Ki;Shin, Hye-su;Jeong, OK-Chan;Kim, Soyoun;Lee, Dong-Ki
    • Molecules and Cells
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    • v.39 no.11
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    • pp.807-813
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    • 2016
  • Escherichia coli are important indicator organisms, used routinely for the monitoring of water and food safety. For quick, sensitive and real-time detection of E. coli we developed a 2'F modified RNA aptamer Ec3, by Cell-SELEX. The 31 nucleotide truncated Ec3 demonstrated improved binding and low nano-molar affinity to E. coli. The aptamer developed by us out-performs the commercial antibody and aptamer used for E. coli detection. Ec3(31) aptamer based E. coli detection was done using three different detection formats and the assay sensitivities were determined. Conventional Ec3(31)-biotin-streptavidin magnetic separation could detect E. coli with a limit of detection of $1.3{\times}10^6CFU/ml$. Although, optical analytic technique, biolayer interferometry, did not improve the sensitivity of detection for whole cells, a very significant improvement in the detection was seen with the E. coli cell lysate ($5{\times}10^4CFU/ml$). Finally we developed Electrochemical Impedance Spectroscopy (EIS) gap capacitance biosensor that has detection limits of $2{\times}10^4CFU/mL$ of E. coli cells, without any labeling and signal amplification techniques. We believe that our developed method can step towards more complex and real sample application.

Improved Method of License Plate Detection and Recognition Facilitated by Fast Super-Resolution GAN (Fast Super-Resolution GAN 기반 자동차 번호판 검출 및 인식 성능 고도화 기법)

  • Min, Dongwook;Lim, Hyunseok;Gwak, Jeonghwan
    • Smart Media Journal
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    • v.9 no.4
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    • pp.134-143
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    • 2020
  • Vehicle License Plate Recognition is one of the approaches for transportation and traffic safety networks, such as traffic control, speed limit enforcement and runaway vehicle tracking. Although it has been studied for decades, it is attracting more and more attention due to the recent development of deep learning and improved performance. Also, it is largely divided into license plate detection and recognition. In this study, experiments were conducted to improve license plate detection performance by utilizing various object detection methods and WPOD-Net(Warped Planar Object Detection Network) model. The accuracy was improved by selecting the method of detecting the vehicle(s) and then detecting the license plate(s) instead of the conventional method of detecting the license plate using the object detection model. In particular, the final performance was improved through the process of removing noise existing in the image by using the Fast-SRGAN model, one of the Super-Resolution methods. As a result, this experiment showed the performance has improved an average of 4.34% from 92.38% to 96.72% compared to previous studies.

A Survey on Annual Exceedance Trends for the Domestic Permissible Exposure Limit for Benzene (벤젠의 국내 허용기준에 대한 연도별 초과 경향 연구)

  • Lee, Kyunghwa;Kim, Ki-Youn
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.28 no.2
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    • pp.144-150
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    • 2018
  • Objectives: The purpose of this study is to analyze the trend for exceedance of the domestic permissible exposure limit of benzene based on a review of the previous literature. Materials and methods: From among 13 chemical substances regulated through a PEL (Permissible Exposure Limit) in the Occupational Safety and Health Act, the research object of this study is benzene. The information utilized is work environment measurement data from 2004 to 2013. The highest level among the concentration data measured at various workplaces was selected as a representative value through the data process. N.D. (Not Detected) data was considered as 1/2 of the LOD (limit of detection). Results: Among the work environment measurement data between 2004 and 2013, the highest number of exceeding workplaces and the excess rate (12 sites and 5.4%) was observed in the 2006 data when applying the current PEL for benzene. When compared with the action level, which means a level one-half of the PEL, 2005's data showed the highest number of exceeding workplaces and greatest excess rate (89 sites & 13.3%). The number of exceeding workplaces and excess rate relative to the PEL for benzene showed an increasing trend in 2004, but tended to decrease after 2007. Conclusions: Based on the results obtained from this study, the exposure level for benzene among domestic workers is not considered to be in a safe phase regardless of the year of work environment measurement. Thus, strict preventive management in workplaces should be provided for reducing exposure to benzene.

Different Real Time PCR Approaches for the Fine Quantification of SNP's Alleles in DNA Pools: Assays Development, Characterization and Pre-validation

  • Mattarucchi, Elia;Marsoni, Milena;Binelli, Giorgio;Passi, Alberto;Lo Curto, Francesco;Pasquali, Francesco;Porta, Giovanni
    • BMB Reports
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    • v.38 no.5
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    • pp.555-562
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    • 2005
  • Single nucleotide polymorphisms (SNPs) are becoming the most common type of markers used in genetic analysis. In the present report a SNP has been chosen to test the applicability of Real Time PCR to discriminate and quantify SNPs alleles on DNA pools. Amplification Refractory Mutation System (ARMS) and Mismatch Amplification Mutation Assay (MAMA) has been applied. Each assay has been pre-validated testing specificity and performances (linearity, PCR efficiency, interference limit, limit of detection, limit of quantification, precision and accuracy). Both the approaches achieve a precise and accurate estimation of the allele frequencies on pooled DNA samples in the range from 5% to 95% and don't require standard curves or calibrators. The lowest measurement that could be significantly distinguished from the background noise has been determined around the 1% for both the approaches, allowing to extend the range of quantifications from 1% to 99%. Furthermore applicability of Real Time PCR assays for general diagnostic purposes is discussed.

Residue Depletion of Cephalexin in the Flounder (Paralichthys olivaceus) (광어에서 Cephalexin의 잔류 소실에 관한 연구)

  • Lim, Jong-hwan;Jang, Beom-su;Park, Byung-kwon;Yun, Hyo-in
    • Korean Journal of Veterinary Research
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    • v.43 no.3
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    • pp.435-438
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    • 2003
  • The objective of this study was to investigate the residue depletion of cephaalexin in the flounder (Paralichthys olivaceus) after multiple oral administrations and to establish the appropriate withdrawal time for edible tissues. A highly sensitive and specific method for the determination of cephalexin in the serum of flounder by LC/MS was developed and validated. Mean recoveries from serum were 87.2% (ranged from 81.2% to 94.5%) for cepalexin. Recovery and precision met the criteria for the guideline of residual analysis of veterinary drugs by the National Veterinary Research and Quarantine Service (NVRQS) in Korea. The limit of detection and limit of quantitation of cephalexin were 10 ng/ml and 50 ng/ml, respectively. Residual levels of cephalexin in muscle samples were estimated with 95% tolerance limit and 95% confidence to fall below the MRL after a withdrawal time of 4 days and 5 days for the 40 and 160 mg/kg/day, respectively.

Rapidly quantitative detection of Nosema ceranae in honeybees using ultra-rapid real-time quantitative PCR

  • Truong, A-Tai;Sevin, Sedat;Kim, Seonmi;Yoo, Mi-Sun;Cho, Yun Sang;Yoon, Byoungsu
    • Journal of Veterinary Science
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    • v.22 no.3
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    • pp.40.1-40.12
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    • 2021
  • Background: The microsporidian parasite Nosema ceranae is a global problem in honeybee populations and is known to cause winter mortality. A sensitive and rapid tool for stable quantitative detection is necessary to establish further research related to the diagnosis, prevention, and treatment of this pathogen. Objectives: The present study aimed to develop a quantitative method that incorporates ultra-rapid real-time quantitative polymerase chain reaction (UR-qPCR) for the rapid enumeration of N. ceranae in infected bees. Methods: A procedure for UR-qPCR detection of N. ceranae was developed, and the advantages of molecular detection were evaluated in comparison with microscopic enumeration. Results: UR-qPCR was more sensitive than microscopic enumeration for detecting two copies of N. ceranae DNA and 24 spores per bee. Meanwhile, the limit of detection by microscopy was 2.40 × 104 spores/bee, and the stable detection level was ≥ 2.40 × 105 spores/bee. The results of N. ceranae calculations from the infected honeybees and purified spores by UR-qPCR showed that the DNA copy number was approximately 8-fold higher than the spore count. Additionally, honeybees infected with N. ceranae with 2.74 × 104 copies of N. ceranae DNA were incapable of detection by microscopy. The results of quantitative analysis using UR-qPCR were accomplished within 20 min. Conclusions: UR-qPCR is expected to be the most rapid molecular method for Nosema detection and has been developed for diagnosing nosemosis at low levels of infection.

Developing a Web-based System for Computing Pre-Harvest Residue Limits (PHRLs)

  • Chang, Han Sub;Bae, Hey Ree;Son, Young Bae;Song, In Ho;Lee, Cheol Ho;Choi, Nam Geun;Cho, Kyoung Kyu;Lee, Young Gu
    • Agribusiness and Information Management
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    • v.3 no.1
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    • pp.11-22
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    • 2011
  • This study describes the development of a web-based system that collects all data generated in the research conducted to set pre-harvest residue limits (PHRLs) for agricultural product safety control. These data, including concentrations of pesticide residues, limit of detection, limit of quantitation, recoveries, weather charts, and growth rates, are incorporated into a database, a regression analysis of the data is performed using statistical techniques, and the PHRL for an agricultural product is automatically computed. The development and establishment of this system increased the efficiency and improved the reliability of the research in this area by standardizing the data and maintaining its accuracy without temporal or spatial limitations. The system permits automatic computation of the PHRL and a quick review of the goodness of fit of the regression model. By building and analyzing a database, it also allows data accumulated over the last 10 years to be utilized.

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Detection of Foodborne Pathogens and Analysis of Aflatoxin Levels in Home-made Doenjang Samples

  • Kim, Myung-Hee;Kim, Yo-Sep
    • Preventive Nutrition and Food Science
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    • v.17 no.2
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    • pp.172-176
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    • 2012
  • Doenjang is a traditional Korean fermented soybean product that provides a major source of protein. In this study, a total of 18 different home-made doenjang samples were examined for the presence of foodborne pathogens and the total aflatoxin levels. Using an enzyme-linked immunosorbent assay to assess microbial quality and potential public health risk, we showed that total coliform levels in the doenjang samples ranged from 0 to $4.43{\pm}2.32{\times}10^6\;CFU/g$, and the maximum limit of Bacillus cereus was $4.67{\pm}2.0{\times}10^5\;CFU/g$. However, other foodborne pathogens, such as Staphylococcus aureus, Escherichia coli O157:H7 and Salmonella spp., were not detected among the tested samples. One of the samples (S3) showed a maximum limit of $42.2{\pm}9.1\;{\mu}g/kg$ for aflatoxin levels, which was above the safety limit allowed by the Codex Alimentarius Commission (CAC) regulatory agency. Further research is necessary to determine whether and how doenjang safety can be improved via elimination/reduction of microbial contamination during fermentation and storage or using microbial starter cultures for its fermentation.

STAR-24K: A Public Dataset for Space Common Target Detection

  • Zhang, Chaoyan;Guo, Baolong;Liao, Nannan;Zhong, Qiuyun;Liu, Hengyan;Li, Cheng;Gong, Jianglei
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.16 no.2
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    • pp.365-380
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    • 2022
  • The target detection algorithm based on supervised learning is the current mainstream algorithm for target detection. A high-quality dataset is the prerequisite for the target detection algorithm to obtain good detection performance. The larger the number and quality of the dataset, the stronger the generalization ability of the model, that is, the dataset determines the upper limit of the model learning. The convolutional neural network optimizes the network parameters in a strong supervision method. The error is calculated by comparing the predicted frame with the manually labeled real frame, and then the error is passed into the network for continuous optimization. Strongly supervised learning mainly relies on a large number of images as models for continuous learning, so the number and quality of images directly affect the results of learning. This paper proposes a dataset STAR-24K (meaning a dataset for Space TArget Recognition with more than 24,000 images) for detecting common targets in space. Since there is currently no publicly available dataset for space target detection, we extracted some pictures from a series of channels such as pictures and videos released by the official websites of NASA (National Aeronautics and Space Administration) and ESA (The European Space Agency) and expanded them to 24,451 pictures. We evaluate popular object detection algorithms to build a benchmark. Our STAR-24K dataset is publicly available at https://github.com/Zzz-zcy/STAR-24K.

Hot plasmas in coronal mass ejection observed by Hinode/XRT

  • Lee, Jin-Yi;Raymond, John C.;Reeves, Katharine K.
    • The Bulletin of The Korean Astronomical Society
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    • v.37 no.1
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    • pp.97-97
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    • 2012
  • Hinode/XRT has observed coronal mass ejections (CMEs) since it launched on Sep. 2006. Observing programs of Hinode/XRT, called 'CME watch', perform several binned observations to obtain large FOV observations with long exposure time that allows the detection of faint CME plasmas in high temperatures. Using those observations, we determine the upper limit to the mass of hot CME plasma using emission measure by assuming the observed plasma structure. In some events, an associated prominence eruption and CME plasma were observed in EUV observations as absorption or emission features. The absorption feature provides the lower limit to the cold mass while the emission feature provides the upper limit to the mass of observed CME plasma in X-ray and EUV passbands. In addition, some events were observed by coronagraph observations (SOHO/LASCO, STEREO/COR1) that allow the determination of total CME mass. However, some events were not observed by the coronagraphs possibly because of low density of the CME plasma. We present the mass constraints of CME plasma and associated prominence as determined by emission and absorption in EUV and X-ray passbands, then compare this mass to the total CME mass as derived from coronagraphs.

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