• Title/Summary/Keyword: Lesion Segmentation

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A Practical Implementation of Deep Learning Method for Supporting the Classification of Breast Lesions in Ultrasound Images

  • Han, Seokmin;Lee, Suchul;Lee, Jun-Rak
    • International journal of advanced smart convergence
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    • v.8 no.1
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    • pp.24-34
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    • 2019
  • In this research, a practical deep learning framework to differentiate the lesions and nodules in breast acquired with ultrasound imaging has been proposed. 7408 ultrasound breast images of 5151 patient cases were collected. All cases were biopsy proven and lesions were semi-automatically segmented. To compensate for the shift caused in the segmentation, the boundaries of each lesion were drawn using Fully Convolutional Networks(FCN) segmentation method based on the radiologist's specified point. The data set consists of 4254 benign and 3154 malignant lesions. In 7408 ultrasound breast images, the number of training images is 6579, and the number of test images is 829. The margin between the boundary of each lesion and the boundary of the image itself varied for training image augmentation. The training images were augmented by varying the margin between the boundary of each lesion and the boundary of the image itself. The images were processed through histogram equalization, image cropping, and margin augmentation. The networks trained on the data with augmentation and the data without augmentation all had AUC over 0.95. The network exhibited about 90% accuracy, 0.86 sensitivity and 0.95 specificity. Although the proposed framework still requires to point to the location of the target ROI with the help of radiologists, the result of the suggested framework showed promising results. It supports human radiologist to give successful performance and helps to create a fluent diagnostic workflow that meets the fundamental purpose of CADx.

Multiple Sclerosis Lesion Detection using 3D Autoencoder in Brain Magnetic Resonance Images (3D 오토인코더 기반의 뇌 자기공명영상에서 다발성 경화증 병변 검출)

  • Choi, Wonjune;Park, Seongsu;Kim, Yunsoo;Gahm, Jin Kyu
    • Journal of Korea Multimedia Society
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    • v.24 no.8
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    • pp.979-987
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    • 2021
  • Multiple Sclerosis (MS) can be early diagnosed by detecting lesions in brain magnetic resonance images (MRI). Unsupervised anomaly detection methods based on autoencoder have been recently proposed for automated detection of MS lesions. However, these autoencoder-based methods were developed only for 2D images (e.g. 2D cross-sectional slices) of MRI, so do not utilize the full 3D information of MRI. In this paper, therefore, we propose a novel 3D autoencoder-based framework for detection of the lesion volume of MS in MRI. We first define a 3D convolutional neural network (CNN) for full MRI volumes, and build each encoder and decoder layer of the 3D autoencoder based on 3D CNN. We also add a skip connection between the encoder and decoder layer for effective data reconstruction. In the experimental results, we compare the 3D autoencoder-based method with the 2D autoencoder models using the training datasets of 80 healthy subjects from the Human Connectome Project (HCP) and the testing datasets of 25 MS patients from the Longitudinal multiple sclerosis lesion segmentation challenge, and show that the proposed method achieves superior performance in prediction of MS lesion by up to 15%.

Three-Dimensional Visualization of Medical Image using Image Segmentation Algorithm based on Deep Learning (딥 러닝 기반의 영상분할 알고리즘을 이용한 의료영상 3차원 시각화에 관한 연구)

  • Lim, SangHeon;Kim, YoungJae;Kim, Kwang Gi
    • Journal of Korea Multimedia Society
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    • v.23 no.3
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    • pp.468-475
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    • 2020
  • In this paper, we proposed a three-dimensional visualization system for medical images in augmented reality based on deep learning. In the proposed system, the artificial neural network model performed fully automatic segmentation of the region of lung and pulmonary nodule from chest CT images. After applying the three-dimensional volume rendering method to the segmented images, it was visualized in augmented reality devices. As a result of the experiment, when nodules were present in the region of lung, it could be easily distinguished with the naked eye. Also, the location and shape of the lesions were intuitively confirmed. The evaluation was accomplished by comparing automated segmentation results of the test dataset to the manual segmented image. Through the evaluation of the segmentation model, we obtained the region of lung DSC (Dice Similarity Coefficient) of 98.77%, precision of 98.45%, recall of 99.10%. And the region of pulmonary nodule DSC of 91.88%, precision of 93.05%, recall of 90.94%. If this proposed system will be applied in medical fields such as medical practice and medical education, it is expected that it can contribute to custom organ modeling, lesion analysis, and surgical education and training of patients.

Boundary and Reverse Attention Module for Lung Nodule Segmentation in CT Images (CT 영상에서 폐 결절 분할을 위한 경계 및 역 어텐션 기법)

  • Hwang, Gyeongyeon;Ji, Yewon;Yoon, Hakyoung;Lee, Sang Jun
    • IEMEK Journal of Embedded Systems and Applications
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    • v.17 no.5
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    • pp.265-272
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    • 2022
  • As the risk of lung cancer has increased, early-stage detection and treatment of cancers have received a lot of attention. Among various medical imaging approaches, computer tomography (CT) has been widely utilized to examine the size and growth rate of lung nodules. However, the process of manual examination is a time-consuming task, and it causes physical and mental fatigue for medical professionals. Recently, many computer-aided diagnostic methods have been proposed to reduce the workload of medical professionals. In recent studies, encoder-decoder architectures have shown reliable performances in medical image segmentation, and it is adopted to predict lesion candidates. However, localizing nodules in lung CT images is a challenging problem due to the extremely small sizes and unstructured shapes of nodules. To solve these problems, we utilize atrous spatial pyramid pooling (ASPP) to minimize the loss of information for a general U-Net baseline model to extract rich representations from various receptive fields. Moreover, we propose mixed-up attention mechanism of reverse, boundary and convolutional block attention module (CBAM) to improve the accuracy of segmentation small scale of various shapes. The performance of the proposed model is compared with several previous attention mechanisms on the LIDC-IDRI dataset, and experimental results demonstrate that reverse, boundary, and CBAM (RB-CBAM) are effective in the segmentation of small nodules.

Algorithm for Extract Region of Interest Using Fast Binary Image Processing (고속 이진화 영상처리를 이용한 관심영역 추출 알고리즘)

  • Cho, Young-bok;Woo, Sung-hee
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.22 no.4
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    • pp.634-640
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    • 2018
  • In this paper, we propose an automatic extraction algorithm of region of interest(ROI) based on medical x-ray images. The proposed algorithm uses segmentation, feature extraction, and reference image matching to detect lesion sites in the input image. The extracted region is searched for matching lesion images in the reference DB, and the matched results are automatically extracted using the Kalman filter based fitness feedback. The proposed algorithm is extracts the contour of the left hand image for extract growth plate based on the left x-ray input image. It creates a candidate region using multi scale Hessian-matrix based sessionization. As a result, the proposed algorithm was able to split rapidly in 0.02 seconds during the ROI segmentation phase, also when extracting ROI based on segmented image 0.53, the reinforcement phase was able to perform very accurate image segmentation in 0.49 seconds.

Deep learning-based apical lesion segmentation from panoramic radiographs

  • Il-Seok, Song;Hak-Kyun, Shin;Ju-Hee, Kang;Jo-Eun, Kim;Kyung-Hoe, Huh;Won-Jin, Yi;Sam-Sun, Lee;Min-Suk, Heo
    • Imaging Science in Dentistry
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    • v.52 no.4
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    • pp.351-357
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    • 2022
  • Purpose: Convolutional neural networks (CNNs) have rapidly emerged as one of the most promising artificial intelligence methods in the field of medical and dental research. CNNs can provide an effective diagnostic methodology allowing for the detection of early-staged diseases. Therefore, this study aimed to evaluate the performance of a deep CNN algorithm for apical lesion segmentation from panoramic radiographs. Materials and Methods: A total of 1000 panoramic images showing apical lesions were separated into training (n=800, 80%), validation (n=100, 10%), and test (n=100, 10%) datasets. The performance of identifying apical lesions was evaluated by calculating the precision, recall, and F1-score. Results: In the test group of 180 apical lesions, 147 lesions were segmented from panoramic radiographs with an intersection over union (IoU) threshold of 0.3. The F1-score values, as a measure of performance, were 0.828, 0.815, and 0.742, respectively, with IoU thresholds of 0.3, 0.4, and 0.5. Conclusion: This study showed the potential utility of a deep learning-guided approach for the segmentation of apical lesions. The deep CNN algorithm using U-Net demonstrated considerably high performance in detecting apical lesions.

Segmentation of MR Brain Image Using Scale Space Filtering and Fuzzy Clustering (스케일 스페이스 필터링과 퍼지 클러스터링을 이용한 뇌 자기공명영상의 분할)

  • 윤옥경;김동휘;박길흠
    • Journal of Korea Multimedia Society
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    • v.3 no.4
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    • pp.339-346
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    • 2000
  • Medical image is analyzed to get an anatomical information for diagnostics. Segmentation must be preceded to recognize and determine the lesion more accurately. In this paper, we propose automatic segmentation algorithm for MR brain images using T1-weighted, T2-weighted and PD images complementarily. The proposed segmentation algorithm is first, extracts cerebrum images from 3 input images using cerebrum mask which is made from PD image. And next, find 3D clusters corresponded to cerebrum tissues using scale filtering and 3D clustering in 3D space which is consisted of T1, T2, and PD axis. Cerebrum images are segmented using FCM algorithm with its initial centroid as the 3D cluster's centroid. The proposed algorithm improved segmentation results using accurate cluster centroid as initial value of FCM algorithm and also can get better segmentation results using multi spectral analysis than single spectral analysis.

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A Study of Computer-aided Detection System for Dental Cavity on Digital X-ray Image (디지털 X선 영상을 이용한 치아 와동 컴퓨터 보조 검출 시스템 연구)

  • Heo, Chang-hoe;Kim, Min-jeong;Cho, Hyun-chong
    • The Transactions of The Korean Institute of Electrical Engineers
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    • v.65 no.8
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    • pp.1424-1429
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    • 2016
  • Segmentation is one of the first steps in most diagnosis systems for characterization of dental caries in an early stage. The purpose of automatic dental cavity detection system is helping dentist to make more precise diagnosis. We proposed the semi-automatic method for the segmentation of dental caries on digital x-ray images. Based on a manually and roughly selected ROI (Region of Interest), it calculated the contour for the dental cavity. A snake algorithm which is one of active contour models repetitively refined the initial contour and self-examination and correction on the segmentation result. Seven phantom tooth from incisor to molar were made for the evaluation of the developed algorithm. They contained a different form of cavities and each phantom tooth has two dental cavities. From 14 dental cavities, twelve cavities were accurately detected including small cavities. And two cavities were segmented partly. It demonstrates the practical feasibility of the dental lesion detection using Computer-aided Detection (CADe).

A Novel Whale Optimized TGV-FCMS Segmentation with Modified LSTM Classification for Endometrium Cancer Prediction

  • T. Satya Kiranmai;P.V.Lakshmi
    • International Journal of Computer Science & Network Security
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    • v.23 no.5
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    • pp.53-64
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    • 2023
  • Early detection of endometrial carcinoma in uterus is essential for effective treatment. Endometrial carcinoma is the worst kind of endometrium cancer among the others since it is considerably more likely to affect the additional parts of the body if not detected and treated early. Non-invasive medical computer vision, also known as medical image processing, is becoming increasingly essential in the clinical diagnosis of various diseases. Such techniques provide a tool for automatic image processing, allowing for an accurate and timely assessment of the lesion. One of the most difficult aspects of developing an effective automatic categorization system is the absence of huge datasets. Using image processing and deep learning, this article presented an artificial endometrium cancer diagnosis system. The processes in this study include gathering a dermoscopy images from the database, preprocessing, segmentation using hybrid Fuzzy C-Means (FCM) and optimizing the weights using the Whale Optimization Algorithm (WOA). The characteristics of the damaged endometrium cells are retrieved using the feature extraction approach after the Magnetic Resonance pictures have been segmented. The collected characteristics are classified using a deep learning-based methodology called Long Short-Term Memory (LSTM) and Bi-directional LSTM classifiers. After using the publicly accessible data set, suggested classifiers obtain an accuracy of 97% and segmentation accuracy of 93%.

A Computer Aided Diagnosis Algorithm for Classification of Malignant Melanoma based on Deep Learning (딥 러닝 기반의 악성흑색종 분류를 위한 컴퓨터 보조진단 알고리즘)

  • Lim, Sangheon;Lee, Myungsuk
    • Journal of Korea Society of Digital Industry and Information Management
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    • v.14 no.4
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    • pp.69-77
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    • 2018
  • The malignant melanoma accounts for about 1 to 3% of the total malignant tumor in the West, especially in the US, it is a disease that causes more than 9,000 deaths each year. Generally, skin lesions are difficult to detect the features through photography. In this paper, we propose a computer-aided diagnosis algorithm based on deep learning for classification of malignant melanoma and benign skin tumor in RGB channel skin images. The proposed deep learning model configures the tumor lesion segmentation model and a classification model of malignant melanoma. First, U-Net was used to segment a skin lesion area in the dermoscopic image. We could implement algorithms to classify malignant melanoma and benign tumor using skin lesion image and results of expert's labeling in ResNet. The U-Net model obtained a dice similarity coefficient of 83.45% compared with results of expert's labeling. The classification accuracy of malignant melanoma obtained the 83.06%. As the result, it is expected that the proposed artificial intelligence algorithm will utilize as a computer-aided diagnosis algorithm and help to detect malignant melanoma at an early stage.