• Title/Summary/Keyword: L-diversity

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Vegetation Types and Their Structures of the Piagol, Mt. Chiri (지리산 피아골의 식생형과 그 구조)

  • 장윤석;임양재
    • Journal of Plant Biology
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    • v.28 no.2
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    • pp.165-175
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    • 1985
  • The natural forest vegetation of the Piagol, Mt. Chiri, was classified into five major communities, i.e. Quercus mongolica, Carpinus laxiflora, C. tschonoskii, Q. serrata and Fraxinus mandshurica community. C. tschonoskii, C. laxiflora and Q. mongolica characteristically were dominated in the range of 500∼700 m, 700∼900 m and 900∼1,400 m in altitude, respectively. Abies nephrolepis and Rhododendron schlippenbachii in the ridge of Nogodan-Nalnaribong, and F. mandshurica and Q. serrata in the Yongsuam ravine were found as the dominant species. The transition between C. tschonoskii and C. laxiflora communities was relatively wide. The boundary between F. mandshurica, in the conglomerated zone, and the other communities surrounding its community was fairly abrupt. In Q. mongolica community, the canopy was relatively opened and the oak young tree of undergrowth was fairly dense. In the community of C. laxiflora and C. tschonoskii, the species composed of their understory was rich while their coverage was lower than that of Q. mongolica community. Shannon's diversity index was decreased in order of C. tschonoskii, C. laxiflora and Q. mongolica community, while their Simpson's dominance index increased conversely. Judging by the DBH-class distribution showing the negative exponential curve, these communities were considered as the climax forest. In Polar Ordination used samples (quadrats), the vegetation of the Piagol was divided into five groups, which was coincided with five communities classified by Braun-Blanquet system. In the ordination, the first axis and the second axis may be considered soil conditions and thermal conditions, respectively. It seems that two different methods, phytosociological method in macro level and ordination techniques in micro level, are useful for the vegetation classification.

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Comprehensive comparative analysis of chloroplast genomes from seven Panax species and development of an authentication system based on species-unique single nucleotide polymorphism markers

  • Nguyen, Van Binh;Giang, Vo Ngoc Linh;Waminal, Nomar Espinosa;Park, Hyun-Seung;Kim, Nam-Hoon;Jang, Woojong;Lee, Junki;Yang, Tae-Jin
    • Journal of Ginseng Research
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    • v.44 no.1
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    • pp.135-144
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    • 2020
  • Background: Panax species are important herbal medicinal plants in the Araliaceae family. Recently, we reported the complete chloroplast genomes and 45S nuclear ribosomal DNA sequences from seven Panax species, two (P. quinquefolius and P. trifolius) from North America and five (P. ginseng, P. notoginseng, P. japonicus, P. vietnamensis, and P. stipuleanatus) from Asia. Methods: We conducted phylogenetic analysis of these chloroplast sequences with 12 other Araliaceae species and comprehensive comparative analysis among the seven Panax whole chloroplast genomes. Results: We identified 1,128 single nucleotide polymorphisms (SNP) in coding gene sequences, distributed among 72 of the 79 protein-coding genes in the chloroplast genomes of the seven Panax species. The other seven genes (including psaJ, psbN, rpl23, psbF, psbL, rps18, and rps7) were identical among the Panax species. We also discovered that 12 large chloroplast genome fragments were transferred into the mitochondrial genome based on sharing of more than 90% sequence similarity. The total size of transferred fragments was 60,331 bp, corresponding to approximately 38.6% of chloroplast genome. We developed 18 SNP markers from the chloroplast genic coding sequence regions that were not similar to regions in the mitochondrial genome. These markers included two or three species-specific markers for each species and can be used to authenticate all the seven Panax species from the others. Conclusion: The comparative analysis of chloroplast genomes from seven Panax species elucidated their genetic diversity and evolutionary relationships, and 18 species-specific markers were able to discriminate among these species, thereby furthering efforts to protect the ginseng industry from economically motivated adulteration.

한국 금-은광화작용과 천열수 광상의 성인모델: 탐사에의 적용

  • 최선규;박상준;김창성
    • Proceedings of the KSEEG Conference
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    • 2002.10a
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    • pp.119-136
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    • 2002
  • Contrasts in the style of the gold-silver mineralization in geologic and tectonic settings in Korea, together with radiometric age data, reflect the genetically different nature of hydrothermal activities, coinciding with the emplacement age and depth of Mesozoic magmatic activities. It represents a clear distinction between the plutonic settings of the Jurassic Daebo orogeny and the subvolcanic environments of the Cretaceous Bulgugsa igneous activities. Dunng the Daebo igneous activities (c.a. 200~150 (\ulcorner) Ma) coincident with orogenic time, gold mineralization took place between c.a. 195 and 135 (127 \ulcorner) Ma. The Jurassic Au deposits commonly show several characteristics; prominent association with pegmatites, low Ag/Au ratios In the ore-concentrating parts, massive vein morphology and a distinctively simple mineralogy including Fe-rich sphalerite, galena, chalcopyrite, arsenopyrite, Au-rich electrum, pyrrhotite and/or pyrite. During the Bulgugsa igneous activities (110~50 Ma), the precious-metal deposits are generally characterized by such features as complex vein morphology, medium to high Ag/Au ratios in the ore concentrates, and diversity of ore minerals including base-metal sulfides, pyrite, arsenopyrite, Ag-rich eletrum and native silver with Ag sulfides, Ag-Sb-As sulfosalts and he tellurides. Vein morphology, mineralogical, fluid inclusion and stable isotope results indicate the diverse genetic natures of hydrothermal systems in Korea. The Jurassic Au-dominant deposits (orogenic type) were formed at the relatively high temperature (about 300$^{\circ}$ to 45$0^{\circ}C$) and deep-crustal level (4.0$\pm$1.5 kb) from the hydrothermal fluids containing more amounts of magmatic waters ($\delta$$^{18}$ $O_{H2O}$; 5~10$\textperthousand$). It can be explained by the dominant ore-depositing mechanisms as $CO_2$ boiling and sulfidation, suggestive of hypo- to mesothermal environments. In contrast, the Cretaceous Au-dominant (l13~68 Ma), Au-Ag (108~47 Ma) and AE-dominant (103~45 Ma) deposits, which correspond to volcanic-plutonic-related type, occurred at relatively low temperature (about 200$^{\circ}$ to 35$0^{\circ}C$) and shallow-crustal level (1.0$\pm$0.5 kb) from the ore-forming fluids containing more amounts of less-evolved meteonc waters ($\delta$$^{18}$ $O_{H2O}$;-10~5$\textperthousand$). These characteristics of the Cretaceous precious-metal deposits can be attributed to the complekities in the ore-precipitating mechanisms (mixing, boiling, cooling), suggestive of epi- to mesothermal environments. Therefore, the differences of the emplacement depth between the Daebo and the Bulgugsa igneous activities directly influence the unique temporal and spatial association of the deposit styles.les.

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Ichthyofauna and Community Structure of Fish in Chuncheon and Andong Reservoirs (춘천호와 안동호의 어류상과 군집 특성)

  • Kim, Jin Hui;Kwon, Joon Yeong;Song, Jun Young;Oh, Yun Kyeong;Kim, Kwang Seog;Hur, Jun Wook
    • Journal of Marine Life Science
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    • v.4 no.2
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    • pp.70-80
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    • 2019
  • Ichthyofauna and community structure of fish were studied for two fisheries resource reserves, Chuncheon reservoir and Andong reservoir from 2017 to 2018. Fish were sampled 8 times at each reservoir. In Chuncheon reservoir, total number of fish sampled was 1,197 representing 34 species and 13 families. Dominant species and sub-dominant species were Lepomis macrochirus (23.2%) and Zacco platypus (17.4%), respectively. In Andong reservoir, total number of fish sampled was 1,393 representing 24 species and 9 families. Dominant species and sub-dominant species were L. macrochirus (15.7%) and Carassius carassius (15.2%), respectively. The diversity index of two sampling site increased compared to previous investigation. The evenness index was not changed much in Andong reservoir but increased in Chuncheon reservoir. Ichthyofauna and community structure of fish at sampling sites in both reservoirs maintained stable except high proportion of exotics species with needed to be reduced by consistent effort. For better fish population in these communities, however, various efforts such as seed stocking and installment of artificial spawning ground should be provided to these reservoirs.

rvH1N1 Neuraminidase Inhibitory Activities of Phenolics from Perilla frutescens (L.) and Their Contents in Cultivars and Germplasm

  • Ha, Tae Joung;Lee, Myoung-Hee;Park, Chang-Hwan;Kim, Jung-In;Oh, Eunyoung;Pae, Suk-Bok;Park, Jae Eun;Kim, Sung-Up;Kwak, Do-Yeon
    • Plant Breeding and Biotechnology
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    • v.6 no.4
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    • pp.404-412
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    • 2018
  • The influenza neuraminidase (NA, E.C. 3.2.1.18), an antiviral, has been the target of high pharmaceutical companies due to its essential role in viral replication cycle. Perilla frutescens (P. frutescens) is used in traditional Chinese medicine for various diseases, such as cold due to wind-cold, headache and cough. In this context, four major polyphenolic compounds including rosmarinic acid-3-O-glucoside (1), rosmarinic acid (2), luteolin (3), and apigenin (4) isolated from P. frutescens were evaluated for their inhibitory effect on recombinant virus H1N1 neuraminidase (rvH1N1 NA). Among the test compounds, rosmarinic acid and luteolin inhibited the rvH1N1 NA with an $IC_{50}$ of 46.7 and $8.4{\mu}M$, respectively. The inhibition kinetics analyzed by the Dixon plots indicated that rosmarinic acid and luteolin were noncompetitive inhibitors and that the inhibition constant, $K_I$, was established as 43.9 and $14.3{\mu}M$, respectively. In addition, 578 genetically diverse accessions and 39 cultivars of P. frutescens were analyzed using HPLC to characterize the diversity of polyphenolic composition and concentration. The individual and total compositions exhibited significant difference (P < 0.05), especially rosmarinic acid which was detected as the predominant metabolite in all accessions (58.8%) and cultivars (62.8%). Yeupsil and Sangback cultivars exhibited the highest rosmarinic acid ($3,393.5{\mu}g/g$) and luteolin ($383.3{\mu}g/g$) content respectively. YCPL177-2 with the high concentration ($889.8{\mu}g/g$) of luteolin may be used as a genetic resource for breeding elite cultivars.

Breeding of a new cultivar of White Flammulina velutipes, 'Seolhan' (흰색 팽이 신품종 '설한' 육성)

  • Im, Ji-Hoon;Oh, Minji;Oh, Youn-Lee;Kim, Minseek;Lee, Yun-Sang
    • Journal of Mushroom
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    • v.19 no.4
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    • pp.279-284
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    • 2021
  • Flammulina velutipes is the representative edible mushroom in Korea. It makes up around 18% of the total mushroom production and accounts for about 36% of the total mushroom export. Despite being one of the most industrially important mushroom in Korea, the distribution rate of domestic cultivar was low (~31.6%) in 2020. Therefore, we need a new domestic cultivar with high quality as the main export mushroom. We developed a new white domestic cultivar, 'Seolhan', bred by mating two monokaryotic strains isolated from Baekseung and Woori-1ho. The optimum mycelial growth temperature was 25℃ and Seolhan had higher mycelial growth than the control at 20 and 25℃. In bottle cultivation, the optimum temperature of incubation was from 15℃ to 17℃ and the growth temperature of Seolhan was 7-8℃, which was slightly higher than that of the control. The yield of Seolan was 226.5±8.0 g, an increase of 18.4% compared to the control. The period of primodia formation also was a couple of days ahead. In morphological traits, the pileus of Seolhan was smaller than that of the control, the stipe was thicker, and the color brighter. As the results of replacement culture and genetic diversity test, it was confirmed that Seolhan was genetically different from other white varieties.

New Record of Alien Plants, Stellaria pallida, S. ruderalis, and Cerastium pumilum (Caryophyllaceae) (미기록 외래식물 모래별꽃(Stellaria palida), 들별꽃(S. ruderalis), 애기점나도나물(Cerastium pumilum)의 보고)

  • Eun Su Kang;Jin Suk Kim;Seon Min Kim;Kang-Hyup Lee;Dong Chan Son
    • Korean Journal of Plant Resources
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    • v.36 no.4
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    • pp.299-313
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    • 2023
  • Stellaria pallida (Dumort.) Crép., S. ruderalis M. Lepší, P. Lepší, Z. Kaplan & P. Koutecký, and Cerastium pumilum Curtis are unrecorded alien species of Caryophyllaceae found in Seoul and Gyeonggi-do in the Republic of Korea. Stellaria pallida is readily distinguished from other taxa in the same genus by its petals, as it's considerably smaller than the sepals or absent. In contrast, S. ruderalis is difficult to identify as it has intermediate traits between S. media L. and S. neglecta (Lej.) Weihe. However, S. ruderlais clearly identified by seed morphology, and S. ruderalis, unlike S. media and S. neglecta, has conical shape of outer periclinal wall and papillate on the basely surface of that. Cerastium pumilum is similar to C. glomeratum Thuill. and belongs to the same subgenus (Sub gen. Fugacia); however, it has some distinct characteristics, including stamens that are primarily 8 (5-10), upper bracts with membranous edges, and the length of the pedicels and petals being longer than that of the sepals. The three of alien plants was recorded for the first time in this study, and information of their habitat, distribution map, description and photographs are presented.

Whole genome sequencing of Luxi Black Head sheep for screening selection signatures associated with important traits

  • Liu, Zhaohua;Tan, Xiuwen;Wang, Jianying;Jin, Qing;Meng, Xianfeng;Cai, Zhongfeng;Cui, Xukui;Wang, Ke
    • Animal Bioscience
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    • v.35 no.9
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    • pp.1340-1350
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    • 2022
  • Objective: Luxi Black Head sheep (LBH) is the first crossbreed specialized for meat production and was developed by crossbreeding Black Head Dorper sheep (DP) and Small Tailed Han sheep (STH) in the farming areas of northern China. Research on the genomic variations and selection signatures of LBH caused by continuous artificial selection is of great significance for identifying the genetic mechanisms of important traits of sheep and for the continuous breeding of LBH. Methods: We explored the genetic relationships of LBH, DP, and several Mongolian sheep breeds by constructing phylogenetic tree, principal component analysis and linkage disequilibrium analysis. In addition, we analysed 29 whole genomes of sheep. The genome-wide selection signatures have been scanned with four methods: heterozygosity (HP), fixation index (FST), cross-population extended haplotype homozygosity (XP-EHH) and the nucleotide diversity (𝜃π) ratio. Results: The genetic relationships analysis showed that LBH appeared to be an independent cluster closer to DP. The candidate signatures of positive selection in sheep genome revealed candidate genes for developmental process (HoxA gene cluster, BCL2L11, TSHR), immunity (CXCL6, CXCL1, SKAP2, PTK6, MST1R), growth (PDGFD, FGF18, SRF, SOCS2), and reproduction (BCAS3, TRIM24, ASTL, FNDC3A). Moreover, two signalling pathways closely related to reproduction, the thyroid hormone signalling pathway and the oxytocin signalling pathway, were detected. Conclusion: The selective sweep analysis of LBH genome revealed candidate genes and signalling pathways associated with developmental process, immunity, growth, and reproduction. Our findings provide a valuable resource for sheep breeding and insight into the mechanisms of artificial selection.

NUWARD SMR safety approach and licensing objectives for international deployment

  • D. Francis;S. Beils
    • Nuclear Engineering and Technology
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    • v.56 no.3
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    • pp.1029-1036
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    • 2024
  • Drawing on the deep experience and understanding of the principles of nuclear safety, as well as many years of nuclear power plant design and operation, the EDF led NUWARD SMR Project is developing a design for a Small Modular Reactor (SMR) of 340 MWe composed of two 170 MWe independent units, that will supplement the offering of high-output nuclear reactors, especially in response to specific needs such as replacement of fossil-fuelled power plants. NUWARD SMR is a mix of proven and innovative design features that will make it more commercially competitive, while integrating safety features that comply with the highest international standards. Following the principles of redundancy and diversity and rigorous application of Defence in Depth (DID), with an international view on nuclear safety licensing, the Project also incorporates new safety approaches into its design development. The NUWARD SMR Project has been in development for a number of years, it entered conceptual design formally in mid-2019 and entered Basic Design in 2023. The objective of the concept design phase was to confirm the project technological choices and to define the first design configuration of the NUWARD SMR product, to document it, in order to launch pre-licensing with the French Safety Authority (ASN) and to define its estimated cost and its subsequent development and construction schedules. As a delivery milestone the Safety Options file (called the Dossier d'Options de Sûreté (DOS)) has been submitted to ASN in July 2023 for their opinion. An integral part of the NUWARD SMR Project, is not only to deliver a design suitable for France and to satisfy French regulation, but to develop a product suitable and indeed desirable, for the international market, with a first focus in Europe. In order to achieve its objectives and realise its market potential, the NUWARD SMR Project needs to define and realise its safety approach within an international environment and that is the key subject of this paper. The following paper: • Summarises the foundation principles and technological background which underpin the design; • Contextualises the key design features with regard to the international safety regulatory framework with particular emphasis on innovative passive safety aspects; • Illustrates the Project activities in preparation for first licensing in France, and also a wider international view via the ASN led Joint Early Review of the NUWARD SMR design, including Finnish and Czech Republic regulators, recently joined by the Swedish, Polish and Dutch regulators; • Articulates the collaborative approach to design development from involvement with the Project partners (the Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Naval Group, TechnicAtome, Framatome and Tractebel) to the establishment of the International NUWARD Advisory Board (INAB), to gain greater international insight and advice; • Concludes with the focus on next steps into detailed design development, standardisation of the design and its simplification to enhance its commercial competitiveness in a context of further harmonisation of the nuclear safety and licensing requirements and aspirations.

Development of an Efficient In Vitro Screening Method for Selection of Resistant Lily Cultivars Against Fusarium oxysporum f. sp. lilii (백합 구근부패병 저항성 검정을 위한 기내 간편 검정법 개발)

  • Jang, Ji-Young;Moon, Ki-Beom;Ha, Jang-Ho;Park, Ji-Sun;Kim, Mi-Jin;Jeon, Jae-Heung;Lee, Geung-Joo;Kim, Hyun-Soon
    • Horticultural Science & Technology
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    • v.33 no.6
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    • pp.883-890
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    • 2015
  • The soilborne fungus Fusarium oxysporum f. sp. lilii (Fol) is a serious threat to all lily cultivars, especially infecting bulbs and flowers. It has become increasingly important to develop varieties resistant against the bulb rot disease. Genetic diversity of cultivars and reliable screening methods are required for this purpose. Here, an efficient in vitro screening system for evaluating resistance to Fol in 38 in vitro-grown lily plants was investigated. Various factors including culture conditions of Fol, inoculum density, appropriate plant materials, inoculation method and duration, and incubation period of plant materials after inoculation were combined to optimize the screening method. As a result, we suggest optimal conditions for an in vitro screening system for the selection of Fol-resistant lily cultivars as follows. Fol was grown on potato dextrose agar (PDA) medium for 6 days at $25^{\circ}C$ in darkness and used as working inoculation. Spore suspensions were prepared (inoculum density: $1.0{\times}10^4$ $spores{\cdot}mL^{-1}$), and then leaf segments $1.5{\times}2.0cm^2$ were inoculated by dipping for 22 hours at $25^{\circ}C$ in dark. Later, leaves were cultured on 0.6% agar plates at $25^{\circ}C$ and 50% humidity with a photoperiod of 16 hours light/8 hours dark (fluence rate of $40{\mu}mol{\cdot}m^{-2}{\cdot}s^{-1}$) to examine the progress of bulb rot. After 7 days, disease levels were classified into indices 1 (no symptom) to 6 (serious bulb rot). Soil inoculation of Fol carried out with resistant or susceptible lily cultivars that had been selected through in vitro screening confirmed the reproducibility of results. Therefore, the in vitro screening method established in this study is efficient and reliable for selection of lily cultivars resistant against bulb rot disease.