• Title/Summary/Keyword: Integrated Networks

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Integrated mRNA and miRNA profile expression in livers of Jinhua and Landrace pigs

  • Huang, Minjie;Chen, Lixing;Shen, Yifei;Chen, Jiucheng;Guo, Xiaoling;Xu, Ningying
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.10
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    • pp.1483-1490
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    • 2019
  • Objective: To explore the molecular mechanisms of fat metabolism and deposition in pigs, an experiment was conducted to identify hepatic mRNAs and miRNAs expression and determine the potential interaction of them in two phenotypically extreme pig breeds. Methods: mRNA and miRNA profiling of liver from 70-day Jinhua (JH) and Landrace (LD) pigs were performed using RNA sequencing. Blood samples were taken to detect results of serum biochemistry. Bioinformatics analysis were applied to construct differentially expressed miRNA-mRNA network. Results: Serum total triiodothyronine and total thyroxine were significantly lower in Jinhua pigs, but the content of serum total cholesterol (TCH) and low-density lipoprotein cholesterol were strikingly higher. A total of 467 differentially expressed genes (DEGs) and 35 differentially expressed miRNAs (DE miRNAs) were identified between JH and LD groups. Gene ontology analysis suggested that DEGs were involved in oxidation-reduction, lipid biosynthetic and lipid metabolism process. Interaction network of DEGs and DE miRNAs were constructed, according to target prediction results. Conclusion: We generated transcriptome and miRNAome profiles of liver from JH and LD pig breeds which represent distinguishing phenotypes of growth and metabolism. The potential miRNA-mRNA interaction networks may provide a comprehensive understanding in the mechanism of lipid metabolism. These results serve as a basis for further investigation on biological functions of miRNAs in the porcine liver.

Validation of exercise-response genes in skeletal muscle cells of Thoroughbred racing horses

  • Kim, Doh Hoon;Lee, Hyo Gun;Sp, Nipin;Kang, Dong Young;Jang, Kyoung-Jin;Lee, Hak Kyo;Cho, Byung-Wook;Yang, Young Mok
    • Animal Bioscience
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    • v.34 no.1
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    • pp.134-142
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    • 2021
  • Objective: To understand the athletic characteristics of Thoroughbreds, high-throughput analysis has been conducted using horse muscle tissue. However, an in vitro system has been lacking for studying and validating genes from in silico data. The aim of this study is to validate genes from differentially expressed genes (DEGs) of our previous RNA-sequencing data in vitro. Also, we investigated the effects of exercise-induced stress including heat, oxidative, hypoxic and cortisol stress on horse skeletal muscle derived cells with the top six upregulated genes of DEGs. Methods: Enriched pathway analysis was conducted using the Database for Annotation, Visualization, and Integrated Discovery (DAVID) tool with upregulated genes in horse skeletal muscle tissue after exercise. Among the candidates, the top six genes were analysed through geneMANIA to investigate gene networks. Muscle cells derived from neonatal horse skeletal tissue were maintained and subjected to exercise-related stressors. Transcriptional changes in the top six genes followed by stressors were investigated using quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Results: The inflammation response pathway was the most commonly upregulated pathway after horse exercise. Under non-cytotoxic conditions of exercise-related stressors, the transcriptional response of the top six genes was different among types of stress. Oxidative stress yielded the most similar expression pattern to DEGs. Conclusion: Our results indicate that transcriptional change after horse exercise in skeletal muscle tissue strongly relates to stress response. The qRT-PCR results showed that stressors contribute differently to the transcriptional regulation. These results would be valuable information to understand horse exercise in the stress aspect.

Urban Regeneration Plan for Mid-sized Cities Deploying the Concept of Smart City - Focused on the US Smart City Challenge in 2015 - (스마트시티 개념을 이용한 중소도시재생계획에 대한 연구 - 2015 미국 스마트시티챌린지 공모전을 중심으로 -)

  • Yoo, Seungho;Kim, Yongseung;Kim, Soyeon
    • Journal of the Architectural Institute of Korea Planning & Design
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    • v.35 no.9
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    • pp.29-40
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    • 2019
  • The concept of smart city is understood as an indispensable component of urban regeneration projects in small cities in terms of providing a better urban environment and efficient living systems with a limited budget. Recently, the Korean government revised the law that related to the construction of the smart city and started to implement the smart city concept not only to new-large urban development but also to small-existed regeneration projects. However, it is difficult for small and medium-sized cities that are suffering from the insufficient professional workforce; knowledge supports for high-tech and lack of professional networks to proceed smart city planning and project that containing regional characteristics. This paper aims to examine the effective way of urban regeneration for small and medium-sized cities through smart city planning and strategy. As an important case, this paper looks at the 'Smart City Challenge' competition that was hosted by the US Department of Transportation in 2015. It examines the background and operation process of the smart city challenge competition, and then analyses each city's strategy and characteristics of seven finalists. This paper highlights the several key lessons to Korean cities: 1) the importance of national government's support in financial and professional resources; 2) the cooperation with local governments and IT corporations which provides realistic and detailed technical solutions; 3) the holistic and integrated approach to urban regeneration starting from transportation issues; 4) the necessity of the government's clear visions and guidelines toward the smart city.

A Study on Scalable Federated ID Interoperability Method in Mobile Network Environments (모바일 환경으로 확장 가능한 federated ID 연동 방안에 관한 연구)

  • Kim, Bae-Hyun;Ryoo, In-Tae
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.15 no.6
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    • pp.27-35
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    • 2005
  • While the current world wide network offers an incredibly rich base of information, it causes network management problem because users should have many independent IDs and passwords for accessing different sewers located in many places. In order to solve this problem users have employed single circle of trust(COT) ID management system, but it is still not sufficient for clearing the problem because the coming ubiquitous network computing environment will be integrated and complex networks combined with wired and wireless network devices. The purpose of this paper is to describe the employment and evaluation of federated ID interoperability method for solving the problem. The use of the proposed model can be a solution for solving network management problem in the age of mobile computing environment as well as wired network computing environment.

Evaluation of Authentication Signaling Load in 3GPP LTE/SAE Networks (3GPP LTE/SAE 네트워크에서의 인증 시그널링 부하에 대한 평가)

  • Kang, Seong-Yong;Han, Chan-Kyu;Choi, Hyoung-Kee
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.22 no.2
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    • pp.213-224
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    • 2012
  • The integrated core network architecture and various mobile subscriber behavior can result in a significant increase of signaling load inside the evolved packet core network proposed by 3GPP in Release 8. Consequently, an authentication signaling analysis can provide insights into reducing the authentication signaling loads and latency, satisfying the quality-of-experience. In this paper, we evaluate the signaling loads in the EPS architecture via analytical modeling based on the renewal process theory. The renewal process theory works well, irrespective of a specific random process (i.e. Poisson). This paper considers various subscribers patterns in terms of call arrival rate, mobility, subscriber's preference and operational policy. Numerical results are illustrated to show the interactions between the parameters and the performance metrics. The sensitivity of vertical handover performance and the effects of heavy-tail process are also discussed.

TJP1 Contributes to Tumor Progression through Supporting Cell-Cell Aggregation and Communicating with Tumor Microenvironment in Leiomyosarcoma

  • Lee, Eun-Young;Kim, Minjeong;Choi, Beom K.;Kim, Dae Hong;Choi, Inho;You, Hye Jin
    • Molecules and Cells
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    • v.44 no.11
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    • pp.784-794
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    • 2021
  • Leiomyosarcoma (LMS) is a mesenchymal malignancy with a complex karyotype. Despite accumulated evidence, the factors contributing to the development of LMS are unclear. Here, we investigated the role of tight-junction protein 1 (TJP1), a membrane-associated intercellular barrier protein during the development of LMS and the tumor microenvironment. We orthotopically transplanted SK-LMS-1 cells and their derivatives in terms of TJP1 expression by intramuscular injection, such as SK-LMS-1 Sh-Control cells and SK-LMS-1 Sh-TJP1. We observed robust tumor growth in mice transplanted with LMS cell lines expressing TJP1 while no tumor mass was found in mice transplanted with SK-LMS-1 Sh-TJP1 cells with silenced TJP1 expression. Tissues from mice were stained and further analyzed to clarify the effects of TJP1 expression on tumor development and the tumor microenvironment. To identify the TJP1-dependent factors important in the development of LMS, genes with altered expression were selected in SK-LMS-1 cells such as cyclinD1, CSF1 and so on. The top 10% of highly expressed genes in LMS tissues were obtained from public databases. Further analysis revealed two clusters related to cell proliferation and the tumor microenvironment. Furthermore, integrated analyses of the gene expression networks revealed correlations among TJP1, CSF1 and CTLA4 at the mRNA level, suggesting a possible role for TJP1 in the immune environment. Taken together, these results imply that TJP1 contributes to the development of sarcoma by proliferation through modulating cell-cell aggregation and communication through cytokines in the tumor microenvironment and might be a beneficial therapeutic target.

Integrated Power Optimization with Battery Friendly Algorithm in Wireless Capsule Endoscopy

  • Mehmood, Tariq;Naeem, Nadeem;Parveen, Sajida
    • International Journal of Computer Science & Network Security
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    • v.21 no.11
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    • pp.338-344
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    • 2021
  • The recently continuous enhancement and development in the biomedical side for the betterment of human life. The Wireless Body Area Networks is a significant tool for the current researcher to design and transfer data with greater data rates among the sensors and sensor nodes for biomedical applications. The core area for research in WBANs is power efficiency, battery-driven devices for health and medical, the Charging limitation is a major and serious problem for the WBANs.this research work is proposed to find out the optimal solution for battery-friendly technology. In this research we have addressed the solution to increasing the battery lifetime with variable data transmission rates from medical equipment as Wireless Endoscopy Capsules, this device will analyze a patient's inner body gastrointestinal tract by capturing images and visualization at the workstation. The second major issue is that the Wireless Endoscopy Capsule based systems are currently not used for clinical applications due to their low data rate as well as low resolution and limited battery lifetime, in case of these devices are more enhanced in these cases it will be the best solution for the medical applications. The main objective of this research is to power optimization by reducing the power consumption of the battery in the Wireless Endoscopy Capsule to make it battery-friendly. To overcome the problem we have proposed the algorithm for "Battery Friendly Algorithm" and we have compared the different frame rates of buffer sizes for Transmissions. The proposed Battery Friendly Algorithm is to send the images on average frame rate instead of transmitting the images on maximum or minimum frame rates. The proposed algorithm extends the battery lifetime in comparison with the previous baseline proposed algorithm as well as increased the battery lifetime of the capsule.

Research Trend of the Remote Sensing Image Analysis Using Deep Learning (딥러닝을 이용한 원격탐사 영상분석 연구동향)

  • Kim, Hyungwoo;Kim, Minho;Lee, Yangwon
    • Korean Journal of Remote Sensing
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    • v.38 no.5_3
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    • pp.819-834
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    • 2022
  • Artificial Intelligence (AI) techniques have been effectively used for image classification, object detection, and image segmentation. Along with the recent advancement of computing power, deep learning models can build deeper and thicker networks and achieve better performance by creating more appropriate feature maps based on effective activation functions and optimizer algorithms. This review paper examined technical and academic trends of Convolutional Neural Network (CNN) and Transformer models that are emerging techniques in remote sensing and suggested their utilization strategies and development directions. A timely supply of satellite images and real-time processing for deep learning to cope with disaster monitoring will be required for future work. In addition, a big data platform dedicated to satellite images should be developed and integrated with drone and Closed-circuit Television (CCTV) images.

A New Design of Privacy Preserving Authentication Protocol in a Mobile Sink UAV Setting (Mobile Sink UAV 환경에서 프라이버시를 보장하는 새로운 인증 프로토콜 설계)

  • Oh, Sang Yun;Jeong, Jae Yeol;Jeong, Ik Rae;Byun, Jin Wook
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.31 no.6
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    • pp.1247-1260
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    • 2021
  • For more efficient energy management of nodes in wireless sensor networks, research has been conducted on mobile sink nodes that deliver data from sensor nodes to server recently. UAV (Unmanned Aerial vehicle) is used as a representative mobile sink node. Also, most studies on UAV propose algorithms for calculating optimal paths and have produced rapid advances in the IoD (Internet of Drones) environment. At the same time, some papers proposed mutual authentication and secure key exchange considering nature of the IoD, which requires efficient creation of multiple nodes and session keys in security perspective. However, most papers that proposed secure communication in mobile sink nodes did not protect end-to-end data privacy. Therefore, in this paper, we propose integrated security model that authentication between mobile sink nodes and sensor nodes to securely relay sensor data to base stations. Also, we show informal security analysis that our scheme is secure from various known attacks. Finally, we compare communication overhead with other key exchange schemes previously proposed.

Development of a System for Field-data Collection Transmission and Monitoring based on Low Power Wide Area Network (저전력 광역통신망 기반 현장데이터 수집 전송 및 모니터링 시스템 개발)

  • Yeong-Tae, Ju;Jong-Sil, Kim;Eung-Kon, Kim
    • The Journal of the Korea institute of electronic communication sciences
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    • v.17 no.6
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    • pp.1105-1112
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    • 2022
  • Field data monitoring systems such as renewable energy generation and smart farm integrated control are developing from PC and server to mobile first, and various wireless communication and application services have emerged with the development of IoT technology. Low-power wide-area networks are services optimized for low-power, low-capacity, and low-speed data transmission, and data collected in the field is transmitted to designated storage servers or cloud-based data platforms, enabling data monitoring. In this paper, we implement an IoT repeater that collects field data with a single device and transmits it to a wireless carrier cloud data flat using a low-power wide-area network, and a monitoring app using it. Using this, the system configuration is simpler, the cost of deployment and operation is lower, and effective data accumulation is possible.