• Title/Summary/Keyword: ITS and lsu rDNA

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Puccinia klugkistiana, a Rust Fungus Occurring on Cleistogenes hackelii in Korea

  • Lee, Jae-Sung;Choi, Young-Joon;Choi, In-Young;Lee, Chong-Kyu;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.49 no.2
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    • pp.253-257
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    • 2021
  • Rust samples at both uredinial and telial stages were collected from Cleistogenes hackelii (Poaceae) in 2017 and 2019 in Korea. Based on the morphological examination and molecular phylogenetic analyses of the internal transcribed spacer (ITS) and large subunit (LSU) rDNA, it was identified as Puccinia klugkistiana. This rust at aecial stage has previously been recorded on Ligustrum japonicum (Oleaceae) in Korea. Puccinia diplachnicola has been previously recorded on C. hackelii in Korea; however, it is believed to be unrelated to the rust collected in the present study. Conclusively, this is the first study to report P. klugkistiana occurrence on C. hackelii in Korea.

Erysiphe cornicola, a Powdery Mildew Occurring on Cornus controversa in Korea

  • In-Young Choi;Lamiya Abasova;Joon-Ho Choi;Ji-Hyun Park;Hyeon-Dong Shin
    • The Korean Journal of Mycology
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    • v.51 no.1
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    • pp.57-62
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    • 2023
  • In Korea, Cornus controversa and C. florida are known as hosts of Erysiphe pulchra from section Microspharea of the genus Erysiphe. However, recent molecular-phylogenetic analyses on the internal transcribed spacer regions and large subunit gene of the rDNA revealed that the Erysiphe powdery mildew on C. controversa in Japan is in fact E. cornicola. To assess the taxonomic status of Erysiphe-C. controversa association in Korea, isolates collected since 1987 were investigated and consequently identified as E. cornicola based on molecular-phylogenetic analyses and new morphological traits. To our knowledge, this is the first study to confirm the presence of this powdery mildew in Korea.

Two Species of Endophytic Penicillium from Pinus rigida in Korea

  • Kim, Chang-Sun;Park, Myung-Soo;Yu, Seung-Hun
    • Mycobiology
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    • v.36 no.4
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    • pp.222-227
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    • 2008
  • Upon studying the diversity of fungal endophytes associated with pine trees in Korea, many species of Penicillium were encountered. In this study, we report two species of Penicillium isolated from the needles of Pinus rigida. Based on ID region analysis, cultural and morphological characteristics, the two species were identified as Penicillium fellutanum and P. toxicarium, both of which are new to Korea.

Root Age-Dependent Changes in Arbuscular Mycorrhizal Fungal Communities Colonizing Roots of Panax ginseng

  • Kil, Yi-Jong;Eo, Ju-Kyeong;Lee, Eun-Hwa;Eom, Ahn-Heum
    • Mycobiology
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    • v.42 no.4
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    • pp.416-421
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    • 2014
  • In this study, we examined arbuscular mycorrhizal fungal (AMF) community structure colonizing field-cultivated ginseng roots according of different ages, such as 1- to 5-year-old plant, collected from Geumsan-gun, Korea. A total of seven AMF species namely, Funnelliformis caledonium, F. moseae, Gigaspora margarita, Paraglomus laccatum, P. occultum, Rhizophagus irregularis, and Scutellospora heterogama were identified from the roots using cloning, PCR-restriction fragment length polymorphism and sequence analysis of the large subunit region in rDNA. AMF species diversity in the ginseng roots decreased with the increase in root age because of the decreased species evenness. In addition, the community structures of AMF in the roots became more uniform. These results suggest that the age of ginseng affects mycorrhizal colonization and its community structure.

Identification of Podosphaera xanthii as the causal agent of powdery mildew disease affecting Echinacea purpurea in Korea (에키나시아 흰가루병을 일으키는 Podosphaera xanthii 동정)

  • Choi, In-Young;Hong, Sun-Hee;Lee, Yong-Ho;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.48 no.3
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    • pp.337-343
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    • 2020
  • During the extensive forays for discovering the biodiversity of phytopathogenic fungi in Korea, powdery mildew-affected purple coneflowers (Echinacea purpurea) were frequently found. Since 2004, nine samples have been deposited in the Korea University Herbarium. The initial symptoms include white, evanescent mycelia and irregular patches on mature leaves. Mild symptoms in the form of discolored lesions are also noticed on the stem and petal of the affected plants. Based on the morphological characteristics of the anamorph and the phylogenetic analysis of the internal transcribed spacers (ITS) and large subunit (LSU) rDNA sequences, the causal fungus was identified as Podosphaera xanthii. This is the first report that identifies the causal agent of powdery mildew disease affecting purple coneflower in Korea.

Two Unreported Species of Endophytic Fungi Isolated from Leaves of Abies koreana in Korea (구상나무의 잎에서 분리한 두 종의 국내 미기록 내생균)

  • Park, Hyeok;Kim, Dong-Yeo;Eom, Ahn-Heum
    • The Korean Journal of Mycology
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    • v.46 no.1
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    • pp.22-27
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    • 2018
  • We isolated endophytic fungal strains from the leaves of Abies koreana growing in Korea. The fungal strains were identified as Coleophoma parafusiformis and Coniochaeta ligniaria, based on morphological characteristics and sequence analysis of the internal transcribed spacer region and large subunit region of ribosomal DNA. These species have not been previously reported in Korea. In this study, we report the morphological characteristics and results of phylogenetic analysis of the two novel fungal strains.

Morphological and molecular characterization of root-lesion nematode Pratylenchus hippeastri from Korea

  • Sungchan Huh;Namsook Park;Heonil Kang;Changhwan Bae;Insoo Choi
    • Korean Journal of Environmental Biology
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    • v.41 no.4
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    • pp.657-665
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    • 2023
  • The root-lesion nematode Pratylenchus spp. is the most important plantparasitic nematode due to its worldwide distribution, wide host ranges, and migratory endoparasitic characteristics. One population of Pratylenchus collected from the giant pussy willow (Salix chaenomeloides Kimura) in the Andong area as part of a nematode survey in Korea was characterized morphologically and by molecular methods. The analysis of morphological measurements and morphometric characteristics, as well as DNA sequencing of the rRNA large subunit (LSU) D2/D3 expansion segments and the internal transcribed spacer (ITS) gene sequence, confirmed the identity of this population as P. hippeastri. This study is the first report of P. hippeastri associated with Salix chaenomeloides in Korea and worldwide. Further studies on distribution and pathogenicity in different P. hippeastri host crops, such as grapevines, strawberries, and apples, are necessary. The taxonomic keys to 16 Pratylenchus species in Korea are provided.

Unrecorded Fungi Isolated from Rhizosphere Soil of Fallopia sachalinensis in Dokdo Islands (독도 왕호장근 근권 토양에서 분리된 미기록 균류)

  • Young-Hyun You;Han Jung Sung;Manh Ha Nguyen;Jong Myong Park;Ji Won Hong;Won-Jae Chi;Kim Bomi;Dae Ho Kim
    • The Korean Journal of Mycology
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    • v.51 no.3
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    • pp.251-257
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    • 2023
  • We isolated fungi from the rhizosphere of Fallopia sachalinensis in Dokdo islands. Morphological and molecular characters, based on the internal transcribed spacer (ITS), and partial large subunit (LSU) or partial beta-tubulin genes, were used to identify the isolated fungi. The results revealed the fungi isolated from the Fallopia rhizosphere to be Penicillium striatisporum and Gongronella sichuanensis. Given that these species have never previously been recorded in Korea, we have described the morphological and molecular characteristics of these fungi in this study.

Pucciniastrum hydrangeae-petiolaris, a Newly Found Rust Fungus on Hydrangea petiolaris in Korea (국내 미기록 등수국 녹병균 Pucciniastrum hydrangeae-petiolaris)

  • Lee, Jae Sung;Choi, Young-Joon;Choi, Byoung-Ki;Jung, Bok-Nam;Park, Ji-Hyun;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.49 no.1
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    • pp.119-125
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    • 2021
  • Hydrangea petiolaris, belonging to the family Hydrangeaceae, is a vine plant distributed in Ulleung, Jeju, and other southern islands of Korea. In October 2017, a rust fungus was discovered on H. petiolaris in Jeju Island, Korea. To identify the rust fungus, we performed a morphological examination and molecular phylogenetic analysis of the internal transcribed spacer and 28S large subunit rDNA sequences. As a result, the fungus was identified as Pucciniastrum hydrangeae-petiolaris, consistent with previous reports from Japan and Russia, but showed a significant phylogenetic distance from Pucciniastrum hydrangeae reported on Hydrangeae spp. in North America. This is the first record of P. hydrangeae-petiolaris on H. petiolaris in Korea.

Rust Fungus Pucciniastrum styracinum on Styrax japonicus in Korea Confirmed by Morphological and Molecular Data (형태 및 분자적 특징에 의한 때죽나무 녹병균(Pucciniastrum styracinum)의 재확인)

  • Park, Ji-Hyun;Jung, Bok-Nam;Lee, Jae Sung;Choi, Young-Joon;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.49 no.4
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    • pp.531-537
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    • 2021
  • Styrax japonicus is a deciduous shrub or a small tree belonging to the family Styracaceae. Since 1990, a rust fungus has continuously been found on S. japonicus leaves across the country. The morphological characteristics of the rust fungus were most consistent with those of Pucciniastrum styracinum reported on Styrax obassia in Japan. The species identification was confirmed by molecular phylogenetic analysis of the internal transcribed spacer and large subunit rDNA sequences. The current study provides mycological information with morphological measurements and molecular phylogenetic data of P. styracinum found on S. japonicus in Korea. Therefore, this is the first confirmed report on the presence of P. styracinum on S. japonicus in Korea.