• Title/Summary/Keyword: ISR

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Use of 16S-23S rRNA Intergenic Spacer Region for Rapid Detection of Vibrio fluvialis (16S-23S rRNA Intergenic Spacer Region을 이용한 Vibrio fluvialis의 검출)

  • 강현실;허문수;이제희
    • Korean Journal of Environmental Biology
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    • v.21 no.1
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    • pp.77-85
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    • 2003
  • We have examined the 16S-23S rRNA intergenic spacer regions (ISR) of Vibrio fluvialis. ISRs were PCR amplified, cloned into a plasmid vector and then sequenced. As results of ISR nucleotide sequence analysis, total of 6 clones were isolated depending on the size. The clones were different in both the number and the composition of the tRNA genes, and were designated ISR-A, ISR-E, ISR-El, ISR-lA, ISR-EKV, ISR-EKAV. ISR-A contains $tRNA^{Ala}$; ISR-lA, $tRNA^{Ile}$-$tRNA^{Ala}$; ISR-EKV, $tRNA^{GIu}$-$tRNA^{Lys}$-$tRNA^{Val}$;ISE-EKAV, $tRNA^{GIu}$-$tRNA^{Lys}$-$tRNA^{Ala}$-$tRNA^{Val}$; ISR -E and E1, $tRNA^{GIu}$ clusters. ISR-EKV was shown to be a minor type out of the six ISR types and showed a very limited homology between ISR-EKV from V, fluvialis and ISRa from other Vibrio species. Therefore ISR-EKV sequence was used to design species-specific primers to detect V, fiuvialis from other Vibrio species by PCR reaction. The specificity of the primers was examined using genomic DNA of other Vibrios as templates for PCR reaction. The result showed that PCR can be a useful method to detect V. fluvialis among Vibrio species in a single PCR reaction.

Determinants of Plant Growth-promoting Ochrobactrum lupini KUDC1013 Involved in Induction of Systemic Resistance against Pectobacterium carotovorum subsp. carotovorum in Tobacco Leaves

  • Sumayo, Marilyn;Hahm, Mi-Seon;Ghim, Sa-Youl
    • The Plant Pathology Journal
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    • v.29 no.2
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    • pp.174-181
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    • 2013
  • The plant growth-promoting rhizobacterium Ochrobactrum lupini KUDC1013 elicited induced systemic resistance (ISR) in tobacco against soft rot disease caused by Pectobacterium carotovorum subsp. carotovorum. We investigated of its factors involved in ISR elicitation. To characterize the ISR determinants, KUDC1013 cell suspension, heat-treated cells, supernatant from a culture medium, crude bacterial lipopolysaccharide (LPS) and flagella were tested for their ISR activities. Both LPS and flagella from KUDC1013 were effective in ISR elicitation. Crude cell free supernatant elicited ISR and factors with the highest ISR activity were retained in the n-butanol fraction. Analysis of the ISR-active fraction revealed the metabolites, phenylacetic acid (PAA), 1-hexadecene and linoleic acid (LA), as elicitors of ISR. Treatment of tobacco with these compounds significantly decreased the soft rot disease symptoms. This is the first report on the ISR determinants by plant growth-promoting rhizobacteria (PGPR) KUDC1013 and identifying PAA, 1-hexadecene and LA as ISR-related compounds. This study shows that KUDC1013 has a great potential as biological control agent because of its multiple factors involved in induction of systemic resistance against phytopathogens.

C4ISR Systems IDS Performance Enhancing Method (C4ISR 체계 IDS의 성능 향상 방안)

  • Choi, Junesung;Kook, Kwangho
    • Convergence Security Journal
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    • v.12 no.4
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    • pp.57-69
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    • 2012
  • C4ISR system is an important tool for military operational command and control. Therefore, it is frequently exposed to the cyber-terror attempt to paralyze the military command and control system. Generally, the information system uses IDS and firewall as major security computing tools. C4ISR system also uses them as major measures for the information protection. But the usefulness of IDS is reduced due to the frequent false-positives and false-negatives if the behavioral patterns are modified or new behavioral patterns appear. This paper presents new IDS structure which can create modified attack patterns and unexpected attack patterns automatically during IDS probing process. The proposed IDS structure is expected to enhance the information protection capability of the C4ISR system by reducing false-positives and false-negatives through the creation and verification of new attack patterns.

Analysis of 16S-23S rRNA Intergenic Spacer Regions of Aeromonas veronii biogroup sobria and A. caviae (Aeromonas veronii biogroup sobria와 Aeromonas caviae의 16S-23S rRNA Intergenic Spacer Regions 분석)

  • 강동율;이훈구
    • Korean Journal of Microbiology
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    • v.36 no.3
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    • pp.173-180
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    • 2000
  • The intern1 spacer regions (ISR) between the 16s and 23s $1_RNA$ genes of Aeronzonus iwonii blogroupsobria and A. caviae were investigated by PCR fragment length typing and DNA sequencing. A. iwonii bv.sobria has a speciIic 16s-23s pattern of 2-4 fiagments ranging Goin 479-539 bp, with the exception of thespecies Aeron7onns cmiae, which has 3 fragments ranglog from 470-602 bp. In all of the.4 vei*onii bv. sobr,iaand A, caviae strains examined in this study, the 470-481bp Tragnent, designated TSR-1, invariably contained $tDNA^{uc(GAT)$ and $tDNA^{Ala(TGC)$ in contrast to ISR-2 (513-525 bp). ISR-3 (537-539 bp) and ISR-4 (568-602 bp)containing TEX>$tDNA^{Olu(ITC)$ A stretch of 20 nucleotides (178-197 bp) in the ISR-4 was conserved only wit11mA.caiiue, from which the A. caiiae specific primer, named prAC-F, was designed and used for PCR with aAcaviae coimnon reverse primer A PCR product of 450 bp was apparent alnong I , caiizne strains, but not ii1.4.ijeronii bv. sob~ia strains. The PCR product was oot detected t"-om strains belonging to A. hjili-o~~hila, Ebrio,aud the family Ef\ulcornertei,obncteriaceae. This study provides the first molecular tool for mdentifying the species 8.caviae.ing the species 8. caviae.

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Isolation and characterization of induced disease resistance (ISR)-deficient mutants of a biocontrol bacterium Pseudomonas chlororaphis O6.

  • Han, Song-Hee;Cho, Baik-Ho;Kim, Young-Cheol
    • Proceedings of the Korean Society of Plant Pathology Conference
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    • 2003.10a
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    • pp.101.1-101
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    • 2003
  • Lipopolysaccharide, siderophore, and cyclic dipeptide have been shown to be necessary for ISR induction by pseudomnads. However, there is no report on cloning of genes or generating specific mutants involving in ISR activity. A biological control bacteium P. chlororaphis O6 induces resistance to Erwinia carotovora subsp. carotovara SCCI in tobacco and induces drought resistance in Arabidopsis. To isolate genes involved in ISR activity and induction of drough resistance of O6, we constructed Tn5 mutants and were used to screen for ISR activity and drought resistance activity using microtiter assay with tobacco and Arabidopsis. Thirty-three ISR-deficient mutants were selected, and the nine ISR-deficient mutants were also lost activity of drought resistance. The flanking sequence analysis of the ISR and drought resistance-deficient mutants showed that a gacS gene encoding a two-component sensor kinase, and a mce gene encoding a protein involved in mycobacterial cell entry were mutated. The flanking sequence of each Tn5 mutant altered ISR activity is currently under investigation. These results indicate that gacS and mce are important genes in induction of ISR activity and drought resistance of P. chlororaphis O6. Our works will open opportunities for identification of bacterial genes or traits that are involved in ISR activity and induced drought resistance of P. chlororaphis O6.

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Suggestions for Transforming ISR into more Practitioner-Oriented Journal (ISR 저널의 실무 지향적 방향 정립를 위한 제언)

  • Kim, Sung-Kun;Jang, Si-Young;Jeong, Seung-Ryul;Lee, Jae-Nam
    • Information Systems Review
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    • v.9 no.3
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    • pp.33-43
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    • 2007
  • Nobody doubts about the importance of both academic and practitioner journal. Recently, however, many researchers in IS field have presented their concerns on the identity of journal of Information Systems Review (ISR). More specifically, they have been worried and concerned with the trend of deviation from the journal's original objective, which is to be the valuable practitioner-oriented journal in the IS field. With the same view in our mind, we attempt to figure out how to fix this trend. This article first analyzes the characteristics of all papers published in the ISR. Based on the findings, we present the future direction of ISR and discuss the submission guidelines about the more appropriate paper for the ISR in terms of methodology, type, and structure of paper. In addition, we propose the new review process for the newly submitted paper to the ISR. We hope this paper triggers a vigorous argument among many IS researchers and practitioners to make ISR the most prestigious outlet in the IS field.

국방 $C^4ISR$ 체계 개발 방향

  • Yang, Byeong-Hui
    • Defense and Technology
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    • no.11 s.273
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    • pp.28-35
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    • 2001
  • 우리 군이 정보전 능력을 갖추기 위한 최우선 과제는 $C^4ISR$체계의 구축이라 할 수 있다. 21세기 지식.정보 중심이 전장에서 $C^4ISR$체계가 가장 핵심적인 기능과 역할을 담당하므로 $C^4ISR$능력의 확보가 없이는 적의 의도를 적시에 파악할 수 없을 뿐만 아니라 적절한 대응 역시 불가능하기 때문이다. 따라서 우리 군이 미래를 대비하고 향후 정보화전쟁에서 승리하기 위해서는 분산된 정보체계를 통합하고 정보화 전문인력을 효율적으로 운용해야 하며, 21세기 지식.정보 중심의 전장에서 가장 핵심적인 기능과 역할을 담당하는 국방 $C^4ISR$체계를 중점적으로 개척할 필요가 있다.

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Modulation of Quorum Sensing in Acyl-homoserine Lactone-Producing or -Degrading Tobacco Plants Leads to Alteration of Induced Systemic Resistance Elicited by the Rhizobacterium Serratia marcescens 90-166

  • Ryu, Choong-Min;Choi, Hye Kyung;Lee, Chi-Ho;Murphy, John F.;Lee, Jung-Kee;Kloepper, Joseph W.
    • The Plant Pathology Journal
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    • v.29 no.2
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    • pp.182-192
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    • 2013
  • Numerous root-associated bacteria (rhizobacteria) are known to elicit induced systemic resistance (ISR) in plants. Bacterial cell-density-dependent quorum sensing (QS) is thought to be important for ISR. Here, we investigated the role of QS in the ISR elicited by the rhizobacterium, Serratia marcescens strain 90-166, in tobacco. Since S. marcescens 90-166 produces at least three QS signals, QS-mediated ISR in strain 90-166 has been difficult to understand. Therefore, we investigated the ISR capacity of two transgenic tobacco (Nicotiana tabacum) plants that contained either bacterial acylhomoserine lactone-producing (AHL) or -degrading (AiiA) genes in conjunction with S. marcescens 90-166 to induce resistance against bacterial and viral pathogens. Root application of S. marcescens 90-166 increased ISR to the bacterial pathogens, Pectobacterium carotovorum subsp. carotovorum and Pseudomonas syringae pv. tabaci, in AHL plants and decreased ISR in AiiA plants. In contrast, ISR to Cucumber mosaic virus was reduced in AHL plants treated with S. marcescens 90-166 but enhanced in AiiA plants. Taken together, these data indicate that QS-dependent ISR is elicited by S. marcescens 90-166 in a pathogen-dependent manner. This study provides insight into QS-dependent ISR in tobacco elicited by S. marcescens 90-166.

Measuring Research Publications of Korean IS Researchers in ISR, MISQ, and JMIS: Focusing on Research Papers between 2001 and 2010 years (한국 IS 연구자의 ISR, MISQ, JMIS에 출판된 논문의 생산성 측정 : 2001년부터 2010년까지의 출판 논문을 중심으로)

  • Lim, Se-Hun
    • Journal of Information Technology Applications and Management
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    • v.19 no.2
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    • pp.1-15
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    • 2012
  • Many IS researchers had the greatest interesting in publication in leading IS journals. Studies of measuring research performance of Information Systems (IS) are the most important research areas. Today, many IS researchers considered Management Information Systems Quarterly (MISQ), Information Systems Research (ISR), and Journal of Management Information Systems (JMIS) as the leading IS journals. In this study, we analyzed the published papers of Korean and overseas Koreans related IS researchers in ISR, MISQ, and JMIS from 2001 to 2010. The results of this study appeared the trend of increasing frequency of publication of IS research in south Korea in the leading IS journals such as ISR, MISQ, JMIS. The findings of this research showed the excellent performance of IS researchers and provided valuable information regarding publications performance of IS researchers in leading IS Journals.

Analysis of 16S-23S rRNA Intergenic Spacer Region of Vibrio vulnificus (Vibrio vulnificus의 16S-23S rRNA Intergenic Spacer Region 분석)

  • PARK Young Mi;LEE Jehee
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.36 no.3
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    • pp.239-246
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    • 2003
  • We have examined the 16S-23S rRNA intergenic spacer region (ISR) of Vibrio vulnificus KCTC 2959. ISRs were amplified by primers complementary to conserved regions of 16S and 23S rRNA genes. ISR amplicons were cloned and sequenced. Analysis of the ISR sequences showed that V. vulnificus KCTC 2959 contains five types of polymorphic ISRs. Size of ISRs ranged from 424 to 741 bp in length and the number of tRNA genes ranged from one to four. The ISRs were designated as ISR-E $(tRNA^{Glu}),\;ISR-IA\;(tRNA^{Ile}-tRNA^{Ala})$, ISR-EKV $(tRNA^{Glu}-tRNA^{Lys}-tRNA^{Val})$, ISR-IAV $(tRNA^{Ile}-tRNA^{Ala}-tRNA^{val})$ and ISR-EKAV $(tRNA^{Glu}-tRNA^{Lys}-tRNA^{Ala}-tRNA^{Val})$ based on their tRNA genes. Multiple alignment of representative sequences from different Vibrio species revealed several domains of high sequence variability. We used the sequences of variable domains to design species-specific primer for detection PCR. Specificity of the primers was examined using genomic DNA prepared from 18 different Vibrio species. The results showed that the PCR using primers designed in this study can be used to detect V. vulnificus from other Vibrio species.