• Title/Summary/Keyword: IGS

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Phylogenetic Analysis of Nuclear Ribosomal DNA Intergenic Spacer (IGS) I Region of Phellinus linteus (Nuclear Ribosomal DNA Intergenic Spacer(IGS) I 영역의 분석에 의한 목질진흙버섯의 계통분류학적 위치)

  • Rew, Young-Hyun;Lee, Jin-Hyung;Kim, Jong-Guk
    • The Korean Journal of Mycology
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    • v.32 no.2
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    • pp.148-151
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    • 2004
  • This study was carried out to elucidate phylogenetic relationship of a yellow lump, Phellinus linteus by comparing the nuclear ribosomal intergenic spacer (IGS) I region with that of other genera of basidiomycetes retrieved from Genbank. IGS I region of Phellinus linteus was 730 bp long and sequence homology was conserved in the 5' region, in particular $1{\sim}280\;bp$, and decreased in the direction toward the 3' end. ITS region was widely studied in phylogenies related to basidiomycetes, but IGS region was not well understood yet. Our study indicated that IGS region can be a good tool in phylogenetic study of basidiomycetes.

GNSS Antenna PCO/PCV and Position Changes due to the Switch IGS08/igs08.atx to IGS14/igs14.atx

  • Choi, Byung-Kyu;Sohn, Dong-Hyo;Yoon, Ha-Su;Lee, Sang Jeong
    • Journal of Positioning, Navigation, and Timing
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    • v.11 no.2
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    • pp.83-89
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    • 2022
  • For precise GNSS applications, the antenna phase center correction (PCC) is absolutely required. The PCC magnitude can reach the centimeter level with the antenna structure. In the present study, we first investigate the phase center offset (PCO) and phase center variation (PCO) of three different antenna models in two different reference frames, IGS08/igs08.atx and IGS14/igs14.atx. Clear L1 and L2 PCO differences were found between IGS08 and IGS14. In addition, the PCV showed characteristics that is dependent upon the signal direction (azimuth and elevation angle). The remarkable thing is that the changes of a Dorne Margolin choke-ring antenna model (AOAD/MT DOME) was very small in two reference frames. In order to analyze changes in positions according to different reference systems, GNSS data obtained from DAEJ, SUWN, and TSKB stations were processed by the precise point positioning (PPP) method. We suggest that an antenna PCO/PCV can affect the precise GNSS positioning on the order of several millimeters in two different reference frames.

Accuracy Evaluation of IGS-RTS Corrections to Stand-Alone Positioning Based on GPS Code-Pseudorange Measurements

  • Kang, Min-Wook;Won, Jihye;Kim, Mi-So;Park, Kwan-Dong
    • Journal of Positioning, Navigation, and Timing
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    • v.5 no.2
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    • pp.59-66
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    • 2016
  • The International GNSS Service (IGS) provides the IGS-Real Time Service (IGS-RTS) corrections that can be used in stand-alone positioning in real time. In this study, the positioning accuracy before and after the application of the corrections to broadcast ephemeris by applying the IGS-RTS corrections at code pseudo-range based stand-alone positioning was compared with positioning result using precise ephemeris. The analysis result on IGS-RTS corrections showed that orbit error and clock error were 0.05 m and 0.5 ns compared to precise ephemeris and accuracy improved by about 8.5% compared to the broadcast ephemeris-applied result when the IGS-RTS was applied to positioning. Furthermore, regionally dispersed five observatories were selected to analyze the effect of external environments on positioning accuracy and positioning errors according to location and time were compared as well as the number of visible satellites and position dilution of precision by observatory were analyzed to verify a correlation with positioning error.

Anomaly Detection of IGS Predicted Orbits for Near-Real-Time Positioning Using GPS (GPS기반 준실시간 위치추적을 위한 IGS 예측궤도력 이상 검출)

  • Ha, Ji-Hyun;Heo, Moon-Beom;Nam, Gi-Wook
    • Journal of Advanced Navigation Technology
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    • v.15 no.6
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    • pp.953-961
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    • 2011
  • IGS (International GNSS Service) predicted orbits contained in IGS ultra-rapid orbits is suitable for real-time or near-real-time precise positioning. In this paper, we analyzed orbit anomalies of the IGS predicted orbits and detected the anomalies NANU (Current Notice Advisories to NAVSTAR Users) messages and IGS BRDC (Broadcast Ephemerides). As a results, the orbit anomalies of the predicted orbits were observed 93 times in 2010. In case of using the NANUs, we could get detection performance of 88% about the IGS predicted orbits's anomalies. And we could achieve 95% detection performance when the NANUs and BRDCs were used together.

PCR-RFLP Analysis of Ribosomal DNA Intergenic Spacer Region in Fusarium section Liseola. (Fusarium section Liseola 균주들에서 rDNA Intergenic Spacer 부위의 PCR-RFLP 분석)

  • 이경은;최영길;민병례
    • Korean Journal of Microbiology
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    • v.38 no.1
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    • pp.7-12
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    • 2002
  • The intergenic spacer (IGS) region of the ribosomal DNA of species in Fusarium section Liseola was analyzed by amplification and subsequent digestion with several restriction enzymes. The length of the amplified IGS region was about 2.6 Kb in all strains except F.moniliforme 12 Which was about 2.9 Kb. The enzymes, EcoRI, HincII, SalI, HindIII, PstI and SmaI, digested the IGS region and nine haplotypes were identified among 11 strains. In the dendrogram based on PCR-RFLP of IGS region combined the results of section Liseola in this study and section Elegans in previous study, variation in the IGS appears to offer considerable potential to resolve intraspecific relationship as well as interspecies or intersection.

Characterization of Carp (Cyprinus carpio L.) Immunoglobulin Structure

  • Choi, Sang-Hoon;Park, Kwan-Ha;Yoon, Jong-Man
    • Asian-Australasian Journal of Animal Sciences
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    • v.15 no.2
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    • pp.290-296
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    • 2002
  • Serum immunoglobulins (Igs) from Israeli carp were purified using affinity chromatography. Fish were immunized with purified mouse IgG, and the specific fish antibodies were purified from the immune serum on a mouse IgG-immobilized agarose gel. Rabbit anti-Israeli carp Igs (R $\alpha$ I. carp Igs) antibodies were produced following hyperimmunization with mouse IgG specific carp antibodies. SDS-PAGE analysis under reducing condition showed that Israeli carp Igs were composed of two $\mu$-like heavy chains with about 82 and 50 kd, respectively, and one light chain with about 25 kd. On immunoblotting analysis, however, R $\alpha$ I. carp Igs failed to react with the light chain. When both protein A and protein G-purified normal carp Ig were compared with mouse IgG-specific Israeli carp Ig, no significant structural differences among them were observed. To investigate if there is any homology between other fish Ig molecules, cross-reactivity of R $\alpha$ I. carp Igs against Ig molecules from 6 different fish sera and mouse control serum was checked on immunoblotting analysis. As a result, R $\alpha$ I. carp Igs responded to Israeli carp, common carp, and tilapia Ig molecules. In flow cytometry study, however, R $\alpha$ I. carp Igs appeared to recognize 42.0%, 35.8% and <5% of Israeli carp, common carp and tilapia $Ig^+$ head kidney cells, respectively. The result suggests the heterogeneity between receptor Igs on B-like lymphocytes and soluble Igs in serum. It is crucial to obtain pure fish Igs to produce reagent antibodies as tools for the study on their specific immune responses.

Variation of the Intergenic Spacer (IGS) Region of Ribosomal DNA among Fusarium oxysporum formae Speciales

  • Kim, Hyun-Jung;Chol, Yong-Keel;Min, Byung-Re
    • Journal of Microbiology
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    • v.39 no.4
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    • pp.265-272
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    • 2001
  • Variation within the intergenic spacer(IGS) of the ribosomal DNA gene for twenty-two strains of E. oxysporum and its formae speciales was examined by PCR, couped with RELP analysis. The length of the amplified IGS region was about 2.6 kb in all strains except F.oxysporum f. sp. cucumer-inum from Korea and F. oxysporum f. sp. niveum. Those two strains were 2.5 kb long. Restriction digestion of IGS-RELP regions by Eco RI, NruI, HincII, SAlI, SmaI, BalIi, HindIII, XhoI and KpnI gave rise to nine IGS hapoltypes among all strains. Cluster analysis based on the presence of absence of comigrating restriction reagments show the two groups based on 44% genetic similarity. These results demonstrated that analysis of IGS showed some difference within and between F. oxysporum formae speciales.

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Immunohistochemistry for detection of Aujeszky's disease virus antigens : Immunogold-silver method in tissue sections (오제스키병 바이러스 항원검출을 위한 면역조직화학적 연구 -조직절편내 immunogold-silver법-)

  • Kim, Soon-bok
    • Korean Journal of Veterinary Research
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    • v.28 no.2
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    • pp.365-369
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    • 1988
  • The present study was done to demonstrate ADV antigens in frozen and paraffin sections from ADV-infected pigs and cell cultures by using of the IGS method. Tissue specimens from 3 young pigs infected with ADV-phylaxia strain and of 2 healthy pigs were used. Fibroblastic cells originated from pig brain and BHK cells were grown and confluent monolayers were infected with the virus. Two monoclonal antibodies and a specific hyperimmune serum to ADV were used as the source of primary antibodies for both the IGS and immunoperoxidase methods. Application of the IGS method yielded a black fine granular reaction in positive areas, and the results were superior to those obtained using the immunoperoxidase technique for all cases tested. The IGS method might be useful in the detection of various viral antigens in tissue sections.

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Phylogenetic relationships of Arthrospira strains inferred from 16S rRNA gene and cpcBA-IGS sequences

  • Choi, Gang-Guk;Ahn, Chi-Yong;Oh, Hee-Mock
    • ALGAE
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    • v.27 no.2
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    • pp.75-82
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    • 2012
  • $Arthrospira$ $platensis$ and $Arthrospira$ $maxima$ are species of cyanobacteria used in health foods, animal feed, food additives, and fine chemicals. This study conducted a comparison of the 16S rRNA gene and $cpcBA$-intergenic spacer ($cpcBA$-IGS) sequences in $Arthrospira$ strains from culture collections around the world. A cluster analysis divided the 10 $Arthrospira$ strains into two main genotypic clusters, designated I and II, where Group I contained $A.$ $platensis$ SAG 86.79, UTEX 2340, $A.$ $maxima$ KCTC AG30054, and SAG 49.88, while Group II contained $A.$ $platensis$ PCC 9108, NIES 39, NIES 46, and SAG 257.80. However, although $A.$ $platensis$ PCC 9223 belonged to Group II-2 based on its $cpcBA$-IGS sequence, this strain also belonged to Group I based on its 16S rRNA gene sequence. Phylogenetic analyses based on the 16S rRNA gene and $cpcBA$-IGS sequences showed no division between $A.$ $platensis$ and $A.$ $maxima$, plus the 16S rRNA gene and $cpcBA$-IGS sequence clusters did not indicate any well-defined geographical distribution, instead overlapping in a rather interesting way. Therefore, the current study supports some previous conclusions based on 16S rRNA gene and $cpcBA$-IGS sequences, which found that $Arthrospira$ taxa are monophyletic. However, when compared with 16S rRNA sequences, $cpcBA$-IGS sequences may be better suited to resolve close relationships and intraspecies variability.

Precise Orbit Determination of GPS using Bernese GPS Software

  • Baek, Jeong-Ho;Cho, Sung-Ki;Jo, Jung-Hyun;Park, Jong-Uk
    • Proceedings of the Korean Institute of Navigation and Port Research Conference
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    • v.2
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    • pp.267-270
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    • 2006
  • The International GNSS Service (IGS) has managed the global GNSS network and provided the highest quality GNSS data and products, which are GPS ephemerides, clock information and Earth orientation parameter, as the standard for GNSS. An important part of its works is to provide the precise orbits of GPS satellites. GPS satellites send their orbit information (broadcast ephemerides) to users and their accuracies are approximately 1.6 meters level, but those accuracies are not sufficient for the high precise applications which require millimeters precision. The current accuracies of the IGS final orbits are within 5 centimeters level and they are used for Earth science, meteorology, space science, and they are made by the IGS analysis centers and combined by the IGS analysis center coordinator. The techniques making the products are very difficult and require the high technology. The Korea Astronomy and Space Science Institute (KASI) studies to make the IGS products. In this study, we developed our own processing strategy and made GPS ephemerides using Bernese GPS software Ver. 5.0. We used the broadcast ephemerides as the initial orbits and processed the globally distributed 150 IGS stations. The result shows about 6 to 8 centimeters in root-mean-squares related to IGS final orbits in each day during a week. We expect that this study can contribute to secure our own high technology.

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