• Bulletin of the Korean Chemical Society
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• v.30 no.2
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• pp.295-296
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• 2009

• Molecules and Cells
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• v.41 no.11
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• pp.953-963
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• 2018

The stepwise development of T cells from a multipotent precursor is guided by diverse mechanisms, including interactions among lineage-specific transcription factors (TFs) and epigenetic changes, such as DNA methylation and hydroxymethylation, which play crucial roles in mammalian development and lineage commitment. To elucidate the transcriptional networks and epigenetic mechanisms underlying T-cell lineage commitment, we investigated genome-wide changes in gene expression, DNA methylation and hydroxymethylation among populations representing five successive stages of T-cell development (DN3, DN4, DP, $CD4^+$, and $CD8^+$) by performing RNA-seq, MBD-seq and hMeDIP-seq, respectively. The most significant changes in the transcriptomes and epigenomes occurred during the DN4 to DP transition. During the DP stage, many genes involved in chromatin modification were up-regulated and exhibited dramatic changes in DNA hydroxymethylation. We also observed 436 alternative splicing events, and approximately 57% (252) of these events occurred during the DP stage. Many stage-specific, differentially methylated regions were observed near the stage-specific, differentially expressed genes. The dynamic changes in DNA methylation and hydroxymethylation were associated with the recruitment of stage-specific TFs. We elucidated interactive networks comprising TFs, chromatin modifiers, and DNA methylation and hope that this study provides a framework for the understanding of the molecular networks underlying T-cell lineage commitment.

• Proceedings of the Korean Society of Potoscience Conference
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• 2005.06a
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• pp.135-135
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• 2005

• Applied Chemistry for Engineering
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• v.16 no.6
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• pp.815-821
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• 2005

Three major commercially available organic chemical admixtures are modified lignosulfonates (LS), sulfonated naphthalene-formaldehyde resins (SNF) and sulfonated melamine-formaldehyde (SMF). In this study, various sulfonated melamine-formaldehyde (SMF) superplasticizers were synthesized via four synthetic steps including hydroxymethylation (Step 1), sulfonation (Step 2), polymerization (Step 3) and neutralization and stabilization (Step 4). In this synthesis, mole ratio of melamine to formaline and the amount of acid catalyst used were varied. The obtained SMF superplasticizers were applied to cement paste and mortar and their physical properties including workability, slump loss, compressive strength were investigated. Also their hydrate shapes were investigated by examining SEM images of the cured paste. It was found that the fluidity properties of cement were significantly influenced by the structure of SMF condensates.

• Proceedings of the Korea Concrete Institute Conference
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• 2005.11a
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• pp.415-418
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• 2005

Nowadays the three major commercially available of organic chemical admixtures are modified lignosulfonates(LS), sulfonated naphthalene-formaldehyde resins (SNF) and sulfonated melamine-formaldehye (SMF). In this study, various sulfonated melamine-formaldehyde (SMF) superplasticizers were synthesized via four synthetic steps. Hydroxymethylation (Step 1), Sulfonation (Step 2), Polymerization (Step 3) and Neutralization and Stabilization (Step 4). In this synthesis of SMF, reaction conditions such as the mole ratio of melamine to formaldehyde and the amount of acid catalyst were changed. After application of SMF superplasticizer to cement paste and mortar, the physical properties including workability, slump loss, compressive strength were compared.

• YAKHAK HOEJI
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• v.35 no.4
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• pp.335-340
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• 1991

The synthetic product of 1-hydroxymethyl-p-mentha-8-ene-2-one was afforded by the reaction between dihydrocarvone and formaldehyde. This reaction involves the aldol condensation. The preferential position of formaldehyde is methyl substituted .alpha.-carbon atom where these enols are regiospecifically formed. The hydroxymethylation of dihydrocarvone was also proved to happen regiospecifically in the position of .alpha.-methyl substituted ketone. When 1-hydroxymethyl-p-mentha-8-ene-2-one reacted with LiAIH$_{4}$, 1-hydroxymethyl-p-mentha-8-ene-2$\beta$-ol obtained. 1-Hydroxymethyl-p-mentha-8-ene-2-one reacted with PDC and chromic acid to give 1-formyl-p-mentha-8-ene-2-one and 1-carboxy-p-mentha-8-ene-2-one. When the hydroxymethyl group of 1-hydroxymethyl-p-menta-8-ene-2-one was reducted to methyl group, 1-methyl-p-menta-8-ene-2-one was obtained. Some of these new compound have certain odor. I, II have woody aroma and IV, V have camphory odors. IX has flowery minty odor.

• BMB Reports
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• v.57 no.3
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• pp.135-142
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• 2024

DNA methylation is one of the most extensively studied epigenetic regulatory mechanisms, known to play crucial roles in various organisms. It has been implicated in the regulation of gene expression and chromatin changes, ranging from global alterations during cell state transitions to locus-specific modifications. 5-hydroxymethylcytosine (5hmC) is produced by a major oxidation, from 5-methylcytosine (5mC), catalyzed by the ten-eleven translocation (TET) enzymes, and is gradually being recognized for its significant role in genome regulation. With the development of state-of-the-art experimental techniques, it has become possible to detect and distinguish 5mC and 5hmC at base resolution. Various techniques have evolved, encompassing chemical and enzymatic approaches, as well as third-generation sequencing techniques. These advancements have paved the way for a thorough exploration of the role of 5hmC across a diverse array of cell types, from embryonic stem cells (ESCs) to various differentiated cells. This review aims to comprehensively report on recent techniques and discuss the emerging roles of 5hmC.

• Molecules and Cells
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• v.38 no.11
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• pp.925-935
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• 2015

DNA methylation is a well-characterized epigenetic modification that plays central roles in mammalian development, genomic imprinting, X-chromosome inactivation and silencing of retrotransposon elements. Aberrant DNA methylation pattern is a characteristic feature of cancers and associated with abnormal expression of oncogenes, tumor suppressor genes or repair genes. Ten-eleven-translocation (TET) proteins are recently characterized dioxygenases that catalyze progressive oxidation of 5-methylcytosine to produce 5-hydroxymethylcytosine and further oxidized derivatives. These oxidized methylcytosines not only potentiate DNA demethylation but also behave as independent epigenetic modifications per se. The expression or activity of TET proteins and DNA hydroxymethylation are highly dysregulated in a wide range of cancers including hematologic and non-hematologic malignancies, and accumulating evidence points TET proteins as a novel tumor suppressor in cancers. Here we review DNA demethylation-dependent and -independent functions of TET proteins. We also describe diverse TET loss-of-function mutations that are recurrently found in myeloid and lymphoid malignancies and their potential roles in hematopoietic transformation. We discuss consequences of the deficiency of individual Tet genes and potential compensation between different Tet members in mice. Possible mechanisms underlying facilitated oncogenic transformation of TET-deficient hematopoietic cells are also described. Lastly, we address non-mutational mechanisms that lead to suppression or inactivation of TET proteins in cancers. Strategies to restore normal 5mC oxidation status in cancers by targeting TET proteins may provide new avenues to expedite the development of promising anti-cancer agents.

• Journal of the Korea Concrete Institute
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• v.17 no.5 s.89
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• pp.811-818
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• 2005

It is well known that the fluidity and the fluidity loss of fresh concrete are affected by the kind of organic admixtures. Organic admixture can improve the properties of concrete. Sulfonated Naphthalene-Formaldehyde(SNF) Superplasticizer is used representatively, but has a problem in fluidity loss. In this study, we synthesized the Sulfonated Melamine-Formaldehyde(SMF) superplasticizer at the various synthetic conditions and compared the physical properties with SMF superplasticizer. SW superplasticizer is synthesized with four synthetic steps. Step 1 is hydroxymethylation, Step. 2 is Sulfonation, Step. 3 is Polymerization and Step. 4 is Stabilization. Synthesis of SMF superplasticizer depends on pH, temperature and reaction time. In this reaction, we changed the mole ratio of melamine to formaldehyde at 1:3, 1:4, and the amount of acid catalyst at Step. 3. After application of SMF superplasticizer and its mixture with SNF superplasticizer to cement pastes and mortars, we measured the physical properties of them at the different dosages(0.5, 1.0, 1.5 wt%) to cement. All samples including superplasticizer showed higher compressive strengths and slump, smaller pore size and porosity than CEM