• Title/Summary/Keyword: Higher-order pattern analysis

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Content Comparative Analysis and Classification for Piniellia ternate, P. pedatisecta and Typhonium flagelliforme by HPLC-PDA analysis (HPLC-PDA를 이용한 반하, 호장남성, 수반하의 분류 및 함량분석)

  • Jo, Ji Eun;Lee, A Yeong;Kim, Hyo Seon;Moon, Byeong Cheol;Choi, Goya;Ji, Yunui;Kim, Ho Kyoung
    • The Korea Journal of Herbology
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    • v.28 no.5
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    • pp.95-101
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    • 2013
  • Objectives : A quantitative method using high performance liquid chromatography with a photodiode array detector(HPLC-PDA) was established for the quantitative analysis of the four main compound and pattern analysis to classification Piiellia ternate, P. pedatisecta and Typhonium flagelliforme. Methods : The analytical procedure for the determination of P. ternata, together with the known main compounds uracil, uridine, guanosine and adenosine was established. Optimum HPLC-PDA separation of these P. ternata was possible on Luna C18(2) column material, using water and acetonitrile as mobile phase. The method was validated according to regulatory guidelines. In addition, this assay method were analyzed for the content of four main compound in P. ternata, P. pedatisecta and T. flagelliforme and by data obtained from the HPLC-PDA analysis was performed principal component analysis(PCA). Results : Validation results indicated that the HPLC method is well suited for the determination of the roots of P. ternata with a good linearity ($r^2$ > 0.999), precision and recovery rates. Analysis of HPLC-PDA, the average content of uracil, uridine, guanosine and adenosine was significantly higher in P. ternate>P. pedatisecta> T. flagelliforme order. The application of PCA to main compound data by HPLC-PDA permitted the effective discrimination among the three species. Conclusions : Analysis of both HPLC-PDA and PCA confirmed the fact that four main compound and pattern profiles of P. ternata, P. pedatisecta and T. flagelliforme were different from each other.

Poor Correlation Between the New Statistical and the Old Empirical Algorithms for DNA Microarray Analysis

  • Kim, Ju Han;Kuo, Winston P.;Kong, Sek-Won;Ohno-Machado, Lucila;Kohane, Isaac S.
    • Genomics & Informatics
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    • v.1 no.2
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    • pp.87-93
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    • 2003
  • DNA microarray is currently the most prominent tool for investigating large-scale gene expression data. Different algorithms for measuring gene expression levels from scanned images of microarray experiments may significantly impact the following steps of functional genomic analyses. $Affymetrix^{(R)}$ recently introduced high-density microarrays and new statistical algorithms in Microarray Suit (MAS) version 5.0$^{(R)}$. Very high correlations (0.92 - 0.97) between the new algorithms and the old algorithms (MAS 4.0) across several species and conditions were reported. We found that the column-wise array correlations had a tendency to be much higher than the row-wise gene correlations, which may be much more meaningful in the following higher-order data analyses including clustering and pattern analyses. In this paper, not only the detailed comparison of the two sets of algorithms is illustrated, but the impact of the introducing new algorithms on the further clustering analysis of microarray data and of possible pitfalls in mixing the old and the new algorithms were also described.

Measurement of ecological niche of Quercus aliena and Q. serrata under environmental factors treatments and its meaning to ecological distribution

  • Lee, Seung-Hyuk;You, Young-Han
    • Journal of Ecology and Environment
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    • v.35 no.3
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    • pp.227-234
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    • 2012
  • Quercus aliena and Q. serrata are both occur as natural vegetation alongside natural freshwater bodies of the southern Korea Peninsula. Q. serrata dominates over Q. aliena as secondary forest vegetation in the present day. In order to explain these natural distributional traits of the oak species, we conducted some experiments with oak seedlings which treated with major important environmental resources, including light, moisture and nutrients, under controlled conditions. We then measured the ecological niche breadths and overlap from 15 eco-morphological characteristics. The ecological niche breadth of Q. aliena and Q. serrata were higher in terms of the nutrient factor applied, but was lower terms of light. The niche breadth of Q. serrata was wider than that of Q. aliena in light and moisture exposure. On the other hand, the niche breadth of Q. aliena was similar with that of Q. serrata in terms of the nutrient factor applied. These results imply that Q. serrata has a broader ecological distribution in over a wider variety of light and moisture environments than that of Q. alien. Ecological niche overlap between two oak species was the widest in terms of the light treatment factor applied, and narrowest in terms of moisture. This response pattern was also verified by cluster and principle component analysis. These results suggest competitive interactions between Q. serrata and Q. aliena seedlings may be higher for light resources than moisture or nutrient resources, and that Q. serrata is more shade tolerant than Q. aliena.

Co-occurrence Patterns of Bird Species in the World

  • Kim, Young Min;Hong, Sungwon;Lee, Yu Seong;Oh, Ki Cheol;Kim, Gu Yeon;Joo, Gea-Jae
    • Korean Journal of Ecology and Environment
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    • v.50 no.4
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    • pp.478-482
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    • 2017
  • In order to identify key nations and bird species of conservation concern we described multinational collaborations as defined using network analysis linked by birds that are found in all nations in the network. We used network analysis to assess the patterns in bird occurrence for 10,422 bird inventories from 244 countries and territories. Nations that are important in multinational collaborations for bird conservation were assessed using the centrality measures, closeness and betweenness centrality. Countries important for the multinational collaboration of bird conservation were examined based on their centrality measures, which included closeness and betweenness centralities. Comparatively, the co-occurrence network was divided into four groups that reveal different biogeographical structures. A group with higher closeness centrality included countries in southern Africa and had the potential to affect species in many other countries. Birds in countries in Asia, Australia and the South Pacific that are important to the cohesiveness of the global network had a higher score of betweenness centrality. Countries that had higher numbers of bird species and more extensively distributed bird species had higher centrality scores; in these countries, birds may act as excellent indicators of trends in the co-occurrence bird network. For effective bird conservation in the world, much stronger coordination among countries is required. Bird co-occurrence patterns can provide a suitable and powerful framework for understanding the complexity of co-occurrence patterns and consequences for multinational collaborations on bird conservation.

Land Use Feature Extraction and Sprawl Development Prediction from Quickbird Satellite Imagery Using Dempster-Shafer and Land Transformation Model

  • Saharkhiz, Maryam Adel;Pradhan, Biswajeet;Rizeei, Hossein Mojaddadi;Jung, Hyung-Sup
    • Korean Journal of Remote Sensing
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    • v.36 no.1
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    • pp.15-27
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    • 2020
  • Accurate knowledge of land use/land cover (LULC) features and their relative changes over upon the time are essential for sustainable urban management. Urban sprawl growth has been always also a worldwide concern that needs to carefully monitor particularly in a developing country where unplanned building constriction has been expanding at a high rate. Recently, remotely sensed imageries with a very high spatial/spectral resolution and state of the art machine learning approaches sent the urban classification and growth monitoring to a higher level. In this research, we classified the Quickbird satellite imagery by object-based image analysis of Dempster-Shafer (OBIA-DS) for the years of 2002 and 2015 at Karbala-Iraq. The real LULC changes including, residential sprawl expansion, amongst these years, were identified via change detection procedure. In accordance with extracted features of LULC and detected trend of urban pattern, the future LULC dynamic was simulated by using land transformation model (LTM) in geospatial information system (GIS) platform. Both classification and prediction stages were successfully validated using ground control points (GCPs) through accuracy assessment metric of Kappa coefficient that indicated 0.87 and 0.91 for 2002 and 2015 classification as well as 0.79 for prediction part. Detail results revealed a substantial growth in building over fifteen years that mostly replaced by agriculture and orchard field. The prediction scenario of LULC sprawl development for 2030 revealed a substantial decline in green and agriculture land as well as an extensive increment in build-up area especially at the countryside of the city without following the residential pattern standard. The proposed method helps urban decision-makers to identify the detail temporal-spatial growth pattern of highly populated cities like Karbala. Additionally, the results of this study can be considered as a probable future map in order to design enough future social services and amenities for the local inhabitants.

Evaluation of Stability of Slope with Granite Weathered Soil considering Rainfall Events (강우사상을 고려한 화강풍화토 비탈면의 안정성 평가)

  • Kim, Gyu-Hyeong;Hwang, Eui-Pil;Lee, Kang-Il
    • Journal of the Society of Disaster Information
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    • v.14 no.4
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    • pp.421-429
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    • 2018
  • Purpose: This study conducted a slope stability study considering changes in the ground water level due to rain phenomena and the duration of rainfall, that is for the purpose of analyzing the stability of the slope surface of the cut section, seepage numerical analysis is performed by height of slope and rainfall accident, and the characteristics of rainfall was applied reasonably in order to determine the slope change during rain by analyzing rainfall and rainfall pattern due to climate change. Results: As a result of numerical analysis of stability for slope composed of the granite weathered soils according to the characteristics of rainfall(Uniform Rainfall, US Army Corps., Huff's method - 1/4, 4/4), Conclusion: The higher the slope, the smaller the safety factor of the slope, the smaller the elevation of the ground water level as the rainwater seepage does not reach the underground water level. In addition, the ground water level was assessed to be rose significantly in condition of case 3 Huff's method - 1/4, rain pattern with the largest initial rainfall duration, and the safety factor was analyzed to be small.

Body-type Study for Hood Pattern - Focusing on the Shoulder and Shape of the Head - (후드(Hood) 패턴 설계를 위한 체형연구 -머리 및 어깨의 형태를 중심으로-)

  • Sohn, Hee-Soon;Shin, Jang-Hee
    • Journal of the Korea Fashion and Costume Design Association
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    • v.13 no.1
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    • pp.37-46
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    • 2011
  • To design a beautiful hood fitting an unspecific individual, focusing on body parts such as the head, neck and shoulder requires body size and type information, which applied by physical factors like size, types, and movements, etc. These parts consist of complicated types and structures. Accurate information should be a priority due to great individual differences and low correlation with other body parts. However, there is not a lot of detailed physical information nor design methods for hood design. Therefore, the purpose of this study is to select a study sample "hood" which is a recently emerging fashion item and to expand the necessary physical information for pattern design and draw body size of wearing part on Hood like head, cerbical portion and shoulder. Extract factors to consist on types and after divided into several types, a study comparing each type's physical characteristics was conducted. In order to do that, body measurement data have been collected by statistical treatment and analyzed reference with statistical treatment. The results of the study are predicted to be important data to develop various hood designs for the recent fashion trend. Factor analysis was conducted through main composition analysis about direct measured item on human body and index items. The results of factor analysis, composed factors of body type in this research object were extracted in total of 3 factors. To categorize the head, neck and shoulders of women in their early 20s women and determine their characteristics, variances with factor analysis became operative for Cluster analysis. With these clusters, women in their early 20s were categorized into three types. The results of this study are considered to affect largely for higher physical suitability on unspecified individuals when allowed absence of reference and the fact that body size only limited to item 'head circumstance' in terms of making hat and hood in the case of recent Korea. For the future, an experimental study of hood production should be conducted by using basic data from this study.

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Design method of heat storage type ground source heat pump system considering energy load pattern of greenhouse (원예시설의 에너지 부하패턴을 고려한 축열식 지열시스템 설계법에 관한 연구)

  • Yu, Min-Gyung;Nam, Yujin;Lee, Kwang Ho
    • KIEAE Journal
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    • v.15 no.3
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    • pp.57-63
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    • 2015
  • Purpose: Ground source heat pump system has been attracted in the horticulture industry for the reduction of energy costs and the increasing of farm income. Even though it has higher initial costs, if it uses in combination with heat storage, it is able to reduce the initial costs and operate efficiently. In order to have significant effect of heat storage type ground source heat pump system, it is required to design the capacity considering various conditions such as energy load pattern and operating schedule. Method: In this study, we have designed heat storage type ground source heat pump system in 5 cases by the operating schedule, and examined the system to find the most economic and having superb performance regarding the system COP(Coefficient of Performance) and energy consumption, using dynamic energy simulation, TRNSYS 17. Result: Conventional ground source heat pump system has lower energy consumption than heat storage type, but following the result of LCC(Life Cycle Cost) analysis, the heat storage type was more economic due to the initial costs. In addition, it has the most efficient performance and energy costs in the case of the smallest heat storage time.

Influence of electro-magneto-thermal environment on the wave propagation analysis of sandwich nano-beam based on nonlocal strain gradient theory and shear deformation theories

  • Arani, Ali Ghorbanpour;Pourjamshidian, Mahmoud;Arefi, Mohammad
    • Smart Structures and Systems
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    • v.20 no.3
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    • pp.329-342
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    • 2017
  • In this paper, the dispersion characteristics of elastic waves propagation in sandwich nano-beams with functionally graded (FG) face-sheets reinforced with carbon nanotubes (CNTs) is investigated based on various high order shear deformation beam theories (HOSDBTs) as well as nonlocal strain gradient theory (NSGT). In order to align CNTs as symmetric and asymmetric in top and bottom face-sheets with respect to neutral geometric axis of the sandwich nano-beam, various patterns are employed in this analysis. The sandwich nano-beam resting on Pasternak foundation is subjected to thermal, magnetic and electrical fields. In order to involve small scale parameter in governing equations, the NSGT is employed for this analysis. The governing equations of motion are derived using Hamilton's principle based on various HSDBTs. Then the governing equations are solved using analytical method. A detailed parametric study is conducted to study the effects of length scale parameter, different HSDBTs, the nonlocal parameter, various aligning of CNTs in thickness direction of face-sheets, different volume fraction of CNTs, foundation stiffness, applied voltage, magnetic intensity field and temperature change on the wave propagation characteristics of sandwich nano-beam. Also cut-off frequency and phase velocity are investigated in detail. According to results obtained, UU and VA patterns have the same cut-off frequency value but AV pattern has the lower value with respect to them.

Study on the Characteristics of PM Distribution in Coastal and Inland Cities Correlation and Its Correlation (해안 및 내륙도시 내 토지이용도별 미세먼지 분포 특성 및 상호 관련성에 관한 연구)

  • Han, Seung-Wook;Lee, Soon-Hwan;Lee, Hwa-woon
    • Journal of Environmental Science International
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    • v.24 no.11
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    • pp.1513-1523
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    • 2015
  • In order to clarify the characteristics of PM10 in coastal and inland cities and their variation statistical analysis were carried out using environmental and meteorological data observed at Busan and Daegu metropolitans during 4 year from 2010. Averaged PM10 concentration was higher in industrial area than any other land-use sites, and its maximum value reach on over $50{\mu}g/m^3$ at Jangrim site in Busan. Temporal and spatial variations of PM10 concentration in Busan were more sharply, since topograph and mesoscale wind pattern in Busan is more complicated than those in Daegu. Correlation of PM10 concentrations between sites within Daegu appeared strongly and maximum values $R^2$ is about 0.8. This indicate that because wind pattern induced by mesoscale forcing in Daegu are well unified, the variation of PM10 concentration tends to be similar in all sites within Daegu. However, due to complicate wind pattern induced by topography and coastal line, PM10 correlation of sites within Busan was weaker in comparison with in Daegu. And correlation of PM10 at same lane-use in Busan and Daegu tend to be related to the intensity of meteorological forcing, which can decide the intensity of wind pattern.